Protein–RNA interactions for Protein: Q3U319

Rnf40, E3 ubiquitin-protein ligase BRE1B, mousemouse

Predictions only

Length 1,001 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rnf40Q3U319 Scarf2-201ENSMUST00000012161 3302 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Rnf40Q3U319 Prss50-201ENSMUST00000051097 1456 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Rnf40Q3U319 Kmt5b-203ENSMUST00000113968 3216 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
Rnf40Q3U319 Nr1d2-201ENSMUST00000090543 4663 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Rnf40Q3U319 Grip1-201ENSMUST00000041962 5343 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
Rnf40Q3U319 Ndor1-202ENSMUST00000114349 2336 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Rnf40Q3U319 Apbb1-209ENSMUST00000188368 1970 ntTSL 5 BASIC19.34■□□□□ 0.69
Rnf40Q3U319 Phldb3-201ENSMUST00000073325 2273 ntAPPRIS P1 TSL 5 BASIC19.34■□□□□ 0.69
Rnf40Q3U319 Rin3-207ENSMUST00000150795 937 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
Rnf40Q3U319 Gm44957-202ENSMUST00000205137 448 ntTSL 3 BASIC19.34■□□□□ 0.69
Rnf40Q3U319 AC154266.1-201ENSMUST00000223190 503 ntBASIC19.34■□□□□ 0.69
Rnf40Q3U319 Bloc1s5-202ENSMUST00000224115 1020 ntBASIC19.34■□□□□ 0.69
Rnf40Q3U319 Ctdsp2-202ENSMUST00000105256 4817 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Rnf40Q3U319 Fam107a-202ENSMUST00000120411 2093 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Rnf40Q3U319 Ddit4-201ENSMUST00000020308 1755 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Rnf40Q3U319 Atp6v0a2-201ENSMUST00000037865 5345 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Rnf40Q3U319 Mindy2-201ENSMUST00000049031 8081 ntAPPRIS P2 TSL 1 (best) BASIC19.34■□□□□ 0.69
Rnf40Q3U319 Orai3-201ENSMUST00000061587 1996 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
Rnf40Q3U319 Lrp5-202ENSMUST00000176867 2759 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
Rnf40Q3U319 Zhx1-202ENSMUST00000110168 5212 ntAPPRIS P1 TSL 5 BASIC19.33■□□□□ 0.69
Rnf40Q3U319 Trnt1-202ENSMUST00000113247 1934 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
Rnf40Q3U319 Abhd13-201ENSMUST00000048216 5074 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
Rnf40Q3U319 Mink1-201ENSMUST00000072237 4994 ntAPPRIS ALT2 TSL 5 BASIC19.33■□□□□ 0.69
Rnf40Q3U319 Vegfb-202ENSMUST00000130048 1158 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.68
Rnf40Q3U319 Gm11691-201ENSMUST00000130963 658 ntTSL 2 BASIC19.33■□□□□ 0.68
Rnf40Q3U319 Zfp346-202ENSMUST00000159147 1146 ntTSL 5 BASIC19.33■□□□□ 0.68
Rnf40Q3U319 Rem2-201ENSMUST00000164697 1194 ntTSL 5 BASIC19.33■□□□□ 0.68
Rnf40Q3U319 4933429H19Rik-202ENSMUST00000187361 995 ntBASIC19.33■□□□□ 0.68
Rnf40Q3U319 Taf6l-211ENSMUST00000177056 2006 ntTSL 5 BASIC19.33■□□□□ 0.68
Rnf40Q3U319 Cdca3-201ENSMUST00000024270 1976 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Rnf40Q3U319 Bean1-204ENSMUST00000171018 3386 ntAPPRIS P4 TSL 1 (best) BASIC19.33■□□□□ 0.68
Rnf40Q3U319 Efnb2-201ENSMUST00000001319 4793 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Rnf40Q3U319 Nfib-204ENSMUST00000107246 3075 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
Rnf40Q3U319 Tigd3-201ENSMUST00000055911 2114 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Rnf40Q3U319 Nek9-201ENSMUST00000040992 5386 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Rnf40Q3U319 Arrb1-210ENSMUST00000179755 7135 ntTSL 5 BASIC19.32■□□□□ 0.68
Rnf40Q3U319 Arrb1-202ENSMUST00000098266 7132 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Rnf40Q3U319 Pex14-201ENSMUST00000103217 2006 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Rnf40Q3U319 D16Ertd472e-202ENSMUST00000114219 1576 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Rnf40Q3U319 Fam53a-202ENSMUST00000065119 2009 ntAPPRIS P2 TSL 1 (best) BASIC19.32■□□□□ 0.68
Rnf40Q3U319 Sntg2-201ENSMUST00000021004 2411 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Rnf40Q3U319 Pick1-201ENSMUST00000018295 1977 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Rnf40Q3U319 Agbl5-209ENSMUST00000201225 2646 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
Rnf40Q3U319 Gab1-202ENSMUST00000210676 4985 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
Rnf40Q3U319 1700016H13Rik-205ENSMUST00000134926 1104 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Rnf40Q3U319 Kcnip2-208ENSMUST00000161886 693 ntAPPRIS P3 TSL 1 (best) BASIC19.32■□□□□ 0.68
Rnf40Q3U319 Vegfb-201ENSMUST00000025914 1281 ntAPPRIS P3 TSL 1 (best) BASIC19.32■□□□□ 0.68
Rnf40Q3U319 Bicdl1-203ENSMUST00000118576 1874 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
Rnf40Q3U319 Vsig10l-204ENSMUST00000203769 2473 ntAPPRIS P2 TSL 1 (best) BASIC19.32■□□□□ 0.68
Rnf40Q3U319 Gm45244-201ENSMUST00000211328 2200 ntBASIC19.32■□□□□ 0.68
Rnf40Q3U319 Nsmf-202ENSMUST00000074422 2824 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
Rnf40Q3U319 Ptp4a2-201ENSMUST00000030578 3646 ntAPPRIS P1 TSL 5 BASIC19.32■□□□□ 0.68
Rnf40Q3U319 Ptpre-201ENSMUST00000073961 5410 ntAPPRIS P3 TSL 1 (best) BASIC19.32■□□□□ 0.68
Rnf40Q3U319 Misp-205ENSMUST00000219305 2569 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Rnf40Q3U319 C1ql3-201ENSMUST00000061545 2535 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Rnf40Q3U319 Nrxn1-217ENSMUST00000174337 3021 ntTSL 5 BASIC19.31■□□□□ 0.68
Rnf40Q3U319 Cspg5-202ENSMUST00000196060 3790 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
Rnf40Q3U319 Pacsin1-204ENSMUST00000114873 1857 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Rnf40Q3U319 Cpox-201ENSMUST00000060077 3186 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Rnf40Q3U319 Chtop-203ENSMUST00000076639 1842 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
Rnf40Q3U319 AB124611-203ENSMUST00000173769 1188 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
Rnf40Q3U319 Tmem131-201ENSMUST00000027290 6546 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Rnf40Q3U319 Itsn1-205ENSMUST00000113996 5147 ntTSL 5 BASIC19.31■□□□□ 0.68
Rnf40Q3U319 Slc22a3-201ENSMUST00000024595 3501 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Rnf40Q3U319 Rybp-201ENSMUST00000101118 4503 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Rnf40Q3U319 Pea15a-202ENSMUST00000111247 2435 ntTSL 3 BASIC19.31■□□□□ 0.68
Rnf40Q3U319 Fn1-208ENSMUST00000186940 1350 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
Rnf40Q3U319 Tmem41a-201ENSMUST00000023562 1359 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Rnf40Q3U319 Mbd6-202ENSMUST00000119078 4287 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
Rnf40Q3U319 Dock9-202ENSMUST00000100299 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
Rnf40Q3U319 Mfsd4a-202ENSMUST00000112365 1536 ntAPPRIS ALT2 TSL 5 BASIC19.3■□□□□ 0.68
Rnf40Q3U319 Lrig1-201ENSMUST00000032105 4831 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Rnf40Q3U319 9330160F10Rik-201ENSMUST00000101007 2766 ntBASIC19.3■□□□□ 0.68
Rnf40Q3U319 4930447C04Rik-201ENSMUST00000044000 2051 ntAPPRIS P2 TSL 1 (best) BASIC19.3■□□□□ 0.68
Rnf40Q3U319 Fgf8-206ENSMUST00000111928 1056 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
Rnf40Q3U319 Eif4e2-204ENSMUST00000113231 1119 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
Rnf40Q3U319 Zfp580-202ENSMUST00000208570 693 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
Rnf40Q3U319 Cuta-201ENSMUST00000025027 639 ntAPPRIS P3 TSL 1 (best) BASIC19.3■□□□□ 0.68
Rnf40Q3U319 Gm7292-201ENSMUST00000194706 2527 ntBASIC19.3■□□□□ 0.68
Rnf40Q3U319 Fam171a2-201ENSMUST00000049057 3118 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Rnf40Q3U319 Six3-203ENSMUST00000176081 3680 ntAPPRIS P2 TSL 1 (best) BASIC19.3■□□□□ 0.68
Rnf40Q3U319 Stxbp5-209ENSMUST00000141722 4702 ntAPPRIS P2 TSL 5 BASIC19.3■□□□□ 0.68
Rnf40Q3U319 P2rx5-201ENSMUST00000006104 2395 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Rnf40Q3U319 Tsen34-202ENSMUST00000108627 1319 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
Rnf40Q3U319 Rbpj-203ENSMUST00000113865 5440 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Rnf40Q3U319 Cpeb2-204ENSMUST00000166713 6846 ntAPPRIS ALT2 TSL 5 BASIC19.29■□□□□ 0.68
Rnf40Q3U319 Bend4-204ENSMUST00000201972 8268 ntAPPRIS P1 TSL 5 BASIC19.29■□□□□ 0.68
Rnf40Q3U319 Thumpd3-201ENSMUST00000032398 2163 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Rnf40Q3U319 Acss2-202ENSMUST00000065973 2876 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
Rnf40Q3U319 Ttyh3-202ENSMUST00000197452 4576 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
Rnf40Q3U319 Tusc2-203ENSMUST00000193418 410 ntTSL 3 BASIC19.29■□□□□ 0.68
Rnf40Q3U319 Rnaseh2c-201ENSMUST00000025864 1126 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Rnf40Q3U319 Oaz1-201ENSMUST00000060987 1071 ntAPPRIS ALT1 TSL 5 BASIC19.29■□□□□ 0.68
Rnf40Q3U319 Rbpms-213ENSMUST00000191473 2547 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
Rnf40Q3U319 Crebbp-201ENSMUST00000023165 10820 ntAPPRIS P2 TSL 1 (best) BASIC19.29■□□□□ 0.68
Rnf40Q3U319 Rnf169-201ENSMUST00000080817 7147 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
Rnf40Q3U319 Cog2-201ENSMUST00000034460 2825 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Rnf40Q3U319 4930426I24Rik-202ENSMUST00000217797 1232 ntBASIC19.28■□□□□ 0.68
Rnf40Q3U319 Rnaset2a-201ENSMUST00000097420 1259 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Rnf40Q3U319 Rnf157-202ENSMUST00000106398 4553 ntAPPRIS ALT2 TSL 5 BASIC19.28■□□□□ 0.68
Retrieved 100 of 76,532 protein–RNA pairs in 19 ms