Protein–RNA interactions for Protein: P43241

Cdx2, Homeobox protein CDX-2, mousemouse

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx2P43241 Fkbp11-201ENSMUST00000003445 731 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Cdx2P43241 K230015D01Rik-201ENSMUST00000211969 1516 ntBASIC17.81■□□□□ 0.44
Cdx2P43241 Rad1-201ENSMUST00000022856 1514 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Cdx2P43241 Slc9a3r2-201ENSMUST00000002572 2118 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Cdx2P43241 Flg-201ENSMUST00000050758 1488 ntBASIC17.81■□□□□ 0.44
Cdx2P43241 Mum1-201ENSMUST00000020365 2640 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Cdx2P43241 Aqp2-201ENSMUST00000023752 1416 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Cdx2P43241 Rbmxl1-201ENSMUST00000049245 1695 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Cdx2P43241 Npr3-205ENSMUST00000228603 2437 ntAPPRIS ALT2 BASIC17.8■□□□□ 0.44
Cdx2P43241 Sae1-201ENSMUST00000094815 1875 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Cdx2P43241 Sec22c-202ENSMUST00000111560 2669 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Cdx2P43241 E4f1-201ENSMUST00000056032 2574 ntAPPRIS P2 TSL 1 (best) BASIC17.8■□□□□ 0.44
Cdx2P43241 Gm11927-201ENSMUST00000118472 759 ntBASIC17.8■□□□□ 0.44
Cdx2P43241 Mrps10-204ENSMUST00000120737 1017 ntAPPRIS ALT1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Cdx2P43241 2210408F21Rik-204ENSMUST00000136571 478 ntTSL 3 BASIC17.8■□□□□ 0.44
Cdx2P43241 Lamtor5-202ENSMUST00000199317 743 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Cdx2P43241 Fitm1-201ENSMUST00000022826 971 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Cdx2P43241 Zcchc13-201ENSMUST00000033692 1085 ntAPPRIS P1 BASIC17.8■□□□□ 0.44
Cdx2P43241 Cnn3-201ENSMUST00000029773 2049 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Cdx2P43241 Ajap1-201ENSMUST00000105646 3048 ntAPPRIS P1 TSL 5 BASIC17.8■□□□□ 0.44
Cdx2P43241 Cers2-201ENSMUST00000015858 2216 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Cdx2P43241 Flot2-203ENSMUST00000100784 2699 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
Cdx2P43241 Hpca-202ENSMUST00000095807 1666 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Cdx2P43241 Etv4-202ENSMUST00000107176 2377 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
Cdx2P43241 Anapc16-204ENSMUST00000182898 1852 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Cdx2P43241 Rapgef1-201ENSMUST00000091146 6212 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
Cdx2P43241 Gabarap-201ENSMUST00000018711 1351 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Cdx2P43241 Pbx1-206ENSMUST00000176790 1828 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
Cdx2P43241 Tnks2-201ENSMUST00000025729 6481 ntAPPRIS P1 TSL 5 BASIC17.79■□□□□ 0.44
Cdx2P43241 Zranb1-202ENSMUST00000106157 5008 ntAPPRIS P2 TSL 5 BASIC17.79■□□□□ 0.44
Cdx2P43241 Cfl1-201ENSMUST00000116560 1148 ntTSL 5 BASIC17.79■□□□□ 0.44
Cdx2P43241 Gm11643-201ENSMUST00000119578 864 ntBASIC17.79■□□□□ 0.44
Cdx2P43241 Prlh-201ENSMUST00000166281 276 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Cdx2P43241 Gm20472-201ENSMUST00000174403 1240 ntBASIC17.79■□□□□ 0.44
Cdx2P43241 Alkbh1-212ENSMUST00000185301 408 ntBASIC17.79■□□□□ 0.44
Cdx2P43241 2310033P09Rik-201ENSMUST00000020719 1285 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Cdx2P43241 Wnt10b-205ENSMUST00000226846 1204 ntBASIC17.79■□□□□ 0.44
Cdx2P43241 AC107452.1-201ENSMUST00000227963 481 ntBASIC17.79■□□□□ 0.44
Cdx2P43241 1700020N01Rik-201ENSMUST00000057341 1062 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Cdx2P43241 Msl3l2-201ENSMUST00000063138 2140 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Cdx2P43241 Gm9987-201ENSMUST00000069768 567 ntBASIC17.79■□□□□ 0.44
Cdx2P43241 Rex1bd-201ENSMUST00000075175 671 ntAPPRIS P2 TSL 1 (best) BASIC17.79■□□□□ 0.44
Cdx2P43241 Odf1-201ENSMUST00000081966 1105 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Cdx2P43241 Tmem51-201ENSMUST00000036572 1875 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Cdx2P43241 Lgr4-201ENSMUST00000046548 5060 ntAPPRIS P1 TSL 2 BASIC17.79■□□□□ 0.44
Cdx2P43241 Fam20b-201ENSMUST00000086153 4414 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Cdx2P43241 Gcgr-201ENSMUST00000026119 1957 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Cdx2P43241 D1Ertd622e-203ENSMUST00000149927 2703 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Cdx2P43241 Prmt9-201ENSMUST00000056237 2781 ntAPPRIS P2 TSL 1 (best) BASIC17.78■□□□□ 0.44
Cdx2P43241 C430049E01Rik-201ENSMUST00000207913 1820 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Cdx2P43241 Dnajc19-204ENSMUST00000120805 551 ntTSL 2 BASIC17.78■□□□□ 0.44
Cdx2P43241 Prr23a1-201ENSMUST00000170349 883 ntAPPRIS P1 BASIC17.78■□□□□ 0.44
Cdx2P43241 Tlx1os-201ENSMUST00000173437 620 ntTSL 3 BASIC17.78■□□□□ 0.44
Cdx2P43241 AC153881.2-201ENSMUST00000214877 204 ntBASIC17.78■□□□□ 0.44
Cdx2P43241 Crtc2-201ENSMUST00000029545 2747 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Cdx2P43241 Gm26708-203ENSMUST00000208236 1624 ntTSL 5 BASIC17.78■□□□□ 0.44
Cdx2P43241 Tead1-204ENSMUST00000106638 3047 ntAPPRIS ALT1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Cdx2P43241 Papd7-202ENSMUST00000198607 4750 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
Cdx2P43241 Atp6v1b1-206ENSMUST00000206911 1591 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
Cdx2P43241 5031439G07Rik-201ENSMUST00000047144 6845 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Cdx2P43241 Gm16759-201ENSMUST00000126238 1393 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
Cdx2P43241 B4galt6-201ENSMUST00000070080 5808 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Cdx2P43241 Mgat5b-201ENSMUST00000103027 4258 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.44
Cdx2P43241 Ngb-201ENSMUST00000021420 1616 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.44
Cdx2P43241 Pdxdc1-203ENSMUST00000115803 1268 ntAPPRIS ALT2 TSL 5 BASIC17.77■□□□□ 0.44
Cdx2P43241 B430219N15Rik-201ENSMUST00000147230 835 ntTSL 2 BASIC17.77■□□□□ 0.44
Cdx2P43241 Mir5122-201ENSMUST00000175004 89 ntBASIC17.77■□□□□ 0.44
Cdx2P43241 H2afz-201ENSMUST00000041045 1069 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Cdx2P43241 Lbx2-201ENSMUST00000041265 817 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Cdx2P43241 Kndc1-202ENSMUST00000121839 2210 ntTSL 2 BASIC17.77■□□□□ 0.44
Cdx2P43241 Magi2-206ENSMUST00000197443 6578 ntAPPRIS ALT2 TSL 5 BASIC17.77■□□□□ 0.43
Cdx2P43241 Tpra1-201ENSMUST00000055022 1820 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
Cdx2P43241 Syt5-201ENSMUST00000065957 1750 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Cdx2P43241 Tspan4-201ENSMUST00000026585 1466 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Cdx2P43241 Scamp3-201ENSMUST00000029684 1489 ntAPPRIS P3 TSL 1 (best) BASIC17.76■□□□□ 0.43
Cdx2P43241 Fblim1-202ENSMUST00000105784 3036 ntAPPRIS P1 TSL 5 BASIC17.76■□□□□ 0.43
Cdx2P43241 Fkbp9-201ENSMUST00000031795 3009 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Cdx2P43241 Smarcad1-201ENSMUST00000031984 5168 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Cdx2P43241 Zfp691-202ENSMUST00000106355 1588 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Cdx2P43241 Cotl1-201ENSMUST00000034285 1596 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Cdx2P43241 Gm45337-201ENSMUST00000210537 1267 ntAPPRIS P1 BASIC17.76■□□□□ 0.43
Cdx2P43241 Mpc2-201ENSMUST00000027853 1025 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Cdx2P43241 Cmtm7-201ENSMUST00000035009 993 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Cdx2P43241 Psmd4-201ENSMUST00000071664 1276 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
Cdx2P43241 Hccs-202ENSMUST00000112115 2473 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Cdx2P43241 Eid2b-201ENSMUST00000094651 1751 ntAPPRIS P1 BASIC17.76■□□□□ 0.43
Cdx2P43241 Ewsr1-205ENSMUST00000102930 2174 ntAPPRIS ALT2 TSL 5 BASIC17.76■□□□□ 0.43
Cdx2P43241 Mrpl15-205ENSMUST00000146665 1569 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
Cdx2P43241 Slc35f3-201ENSMUST00000108759 2309 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Cdx2P43241 Cox7a2l-202ENSMUST00000167741 1147 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
Cdx2P43241 AC121577.1-201ENSMUST00000227302 707 ntBASIC17.75■□□□□ 0.43
Cdx2P43241 Nme2-202ENSMUST00000072566 734 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Cdx2P43241 Lsm14a-201ENSMUST00000085585 2944 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Cdx2P43241 Thegl-202ENSMUST00000117880 1641 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Cdx2P43241 Nfe2-210ENSMUST00000156927 1608 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
Cdx2P43241 Lrrc36-204ENSMUST00000213547 2396 ntAPPRIS ALT2 TSL 5 BASIC17.75■□□□□ 0.43
Cdx2P43241 Kansl1-204ENSMUST00000106972 5427 ntAPPRIS ALT2 TSL 5 BASIC17.75■□□□□ 0.43
Cdx2P43241 Hyal2-207ENSMUST00000195752 2062 ntAPPRIS P2 TSL 5 BASIC17.75■□□□□ 0.43
Cdx2P43241 Lpin2-213ENSMUST00000156570 1586 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
Cdx2P43241 Gm37352-201ENSMUST00000193908 2181 ntBASIC17.74■□□□□ 0.43
Retrieved 100 of 76,532 protein–RNA pairs in 18.5 ms