Protein–RNA interactions for Protein: P42859

Htt, Huntingtin, mousemouse

Predictions only

Length 3,119 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HttP42859 Gm44973-201ENSMUST00000207050 1003 ntAPPRIS P1 TSL 3 BASIC20.26■□□□□ 0.83
HttP42859 Cdx1-201ENSMUST00000025521 1750 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
HttP42859 Gm16386-201ENSMUST00000181397 1423 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
HttP42859 Doc2g-201ENSMUST00000025806 1446 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
HttP42859 Them6-201ENSMUST00000070923 1784 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
HttP42859 Khdc3-204ENSMUST00000173734 1228 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
HttP42859 Gm26971-201ENSMUST00000182423 1072 ntBASIC20.25■□□□□ 0.83
HttP42859 Dpf1-202ENSMUST00000065181 1574 ntAPPRIS ALT1 TSL 5 BASIC20.25■□□□□ 0.83
HttP42859 Mfsd4b2-201ENSMUST00000045526 2285 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
HttP42859 Gm3764-209ENSMUST00000181550 1093 ntTSL 3 BASIC20.25■□□□□ 0.83
HttP42859 Fxyd1-208ENSMUST00000205807 539 ntTSL 3 BASIC20.25■□□□□ 0.83
HttP42859 Gm36736-201ENSMUST00000206060 646 ntTSL 3 BASIC20.25■□□□□ 0.83
HttP42859 Pitx2-201ENSMUST00000029657 1680 ntTSL 5 BASIC20.25■□□□□ 0.83
HttP42859 Larp1b-206ENSMUST00000191872 1505 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
HttP42859 Bspry-202ENSMUST00000107449 2167 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
HttP42859 Tpra1-223ENSMUST00000204765 1738 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
HttP42859 Notum-203ENSMUST00000106178 2012 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
HttP42859 Ppil3-202ENSMUST00000114345 1175 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
HttP42859 Ddah2-204ENSMUST00000174493 1254 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
HttP42859 Siglecf-202ENSMUST00000121494 1572 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
HttP42859 Krtap1-4-201ENSMUST00000100479 593 ntAPPRIS P1 BASIC20.24■□□□□ 0.83
HttP42859 Tppp3-202ENSMUST00000176419 719 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
HttP42859 Fam49b-202ENSMUST00000164532 1770 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
HttP42859 Cyp2r1-207ENSMUST00000211506 1887 ntTSL 5 BASIC20.24■□□□□ 0.83
HttP42859 Snx15-201ENSMUST00000025702 1635 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
HttP42859 Krt24-201ENSMUST00000017255 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
HttP42859 Foxa2-201ENSMUST00000047315 2128 ntAPPRIS P3 TSL 1 (best) BASIC20.24■□□□□ 0.83
HttP42859 Zfp580-202ENSMUST00000208570 693 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
HttP42859 P2rx2-203ENSMUST00000195985 2096 ntAPPRIS P4 TSL 1 (best) BASIC20.23■□□□□ 0.83
HttP42859 Eva1c-201ENSMUST00000037539 1698 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
HttP42859 2900052L18Rik-201ENSMUST00000139014 1588 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
HttP42859 Polr1d-202ENSMUST00000110557 1137 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
HttP42859 Slc39a7-203ENSMUST00000169397 2107 ntAPPRIS P1 TSL 5 BASIC20.23■□□□□ 0.83
HttP42859 Snrnp48-202ENSMUST00000178564 847 ntTSL 5 BASIC20.23■□□□□ 0.83
HttP42859 Gm5867-201ENSMUST00000063197 592 ntBASIC20.23■□□□□ 0.83
HttP42859 Hlx-201ENSMUST00000048572 2278 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
HttP42859 Gm20634-201ENSMUST00000090779 2956 ntBASIC20.23■□□□□ 0.83
HttP42859 Ctdsp1-201ENSMUST00000027367 2876 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
HttP42859 Epo-203ENSMUST00000111039 706 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
HttP42859 Gm42545-201ENSMUST00000202755 922 ntBASIC20.22■□□□□ 0.83
HttP42859 Gm11927-201ENSMUST00000118472 759 ntBASIC20.22■□□□□ 0.83
HttP42859 Gm42882-201ENSMUST00000201788 506 ntTSL 3 BASIC20.22■□□□□ 0.83
HttP42859 Tpra1-201ENSMUST00000055022 1820 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
HttP42859 Ppm1b-201ENSMUST00000080217 2753 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
HttP42859 Mal2-201ENSMUST00000025356 2950 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
HttP42859 Slc25a39-202ENSMUST00000107098 1606 ntAPPRIS ALT1 TSL 5 BASIC20.22■□□□□ 0.83
HttP42859 Gtf3a-201ENSMUST00000132102 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
HttP42859 Rhob-201ENSMUST00000067384 2349 ntAPPRIS P1 BASIC20.21■□□□□ 0.83
HttP42859 Arnt-204ENSMUST00000107160 783 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
HttP42859 Cnnm1-202ENSMUST00000223787 2931 ntAPPRIS ALT2 BASIC20.21■□□□□ 0.83
HttP42859 Rnaset2b-202ENSMUST00000179728 2448 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
HttP42859 Fam181a-201ENSMUST00000179363 1406 ntAPPRIS P1 TSL 2 BASIC20.21■□□□□ 0.83
HttP42859 Fam181a-203ENSMUST00000191218 1419 ntAPPRIS P1 TSL 5 BASIC20.21■□□□□ 0.83
HttP42859 Syt8-202ENSMUST00000105976 1289 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
HttP42859 B230208B08Rik-201ENSMUST00000173049 404 ntTSL 3 BASIC20.2■□□□□ 0.82
HttP42859 Gm32031-203ENSMUST00000208993 649 ntTSL 2 BASIC20.2■□□□□ 0.82
HttP42859 Umpk-ps-201ENSMUST00000211897 827 ntBASIC20.2■□□□□ 0.82
HttP42859 Tbpl1-201ENSMUST00000095794 1195 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
HttP42859 4930432B10Rik-202ENSMUST00000181330 1612 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
HttP42859 Sdf4-204ENSMUST00000105579 1670 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
HttP42859 Gm32051-202ENSMUST00000197905 2385 ntBASIC20.2■□□□□ 0.82
HttP42859 Gm18025-201ENSMUST00000221733 862 ntBASIC20.2■□□□□ 0.82
HttP42859 Hist1h2bh-201ENSMUST00000224359 1679 ntAPPRIS P1 BASIC20.2■□□□□ 0.82
HttP42859 Spsb3-204ENSMUST00000119829 1955 ntAPPRIS ALT2 TSL 2 BASIC20.2■□□□□ 0.82
HttP42859 Alkbh2-201ENSMUST00000053657 1073 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
HttP42859 Gas2l1-203ENSMUST00000109895 2530 ntAPPRIS P3 TSL 1 (best) BASIC20.19■□□□□ 0.82
HttP42859 Tlcd1-201ENSMUST00000092880 2700 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
HttP42859 Rapgef3-207ENSMUST00000134885 1422 ntTSL 5 BASIC20.19■□□□□ 0.82
HttP42859 Gm43183-201ENSMUST00000200632 547 ntBASIC20.19■□□□□ 0.82
HttP42859 Lysmd2-201ENSMUST00000034702 1189 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
HttP42859 Espn-206ENSMUST00000103196 1323 ntTSL 5 BASIC20.19■□□□□ 0.82
HttP42859 Fdps-203ENSMUST00000196709 1382 ntAPPRIS P1 TSL 5 BASIC20.19■□□□□ 0.82
HttP42859 Nudt22-203ENSMUST00000180765 1073 ntAPPRIS P1 TSL 5 BASIC20.18■□□□□ 0.82
HttP42859 Gcgr-201ENSMUST00000026119 1957 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
HttP42859 Zfp653-201ENSMUST00000043922 2108 ntAPPRIS P3 TSL 1 (best) BASIC20.18■□□□□ 0.82
HttP42859 Spsb2-202ENSMUST00000052727 1219 ntAPPRIS P1 TSL 3 BASIC20.18■□□□□ 0.82
HttP42859 Gm10125-201ENSMUST00000074702 2286 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
HttP42859 Anapc16-204ENSMUST00000182898 1852 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
HttP42859 Zfp629-206ENSMUST00000132524 215 ntTSL 5 BASIC20.18■□□□□ 0.82
HttP42859 Gm17661-201ENSMUST00000170317 270 ntBASIC20.18■□□□□ 0.82
HttP42859 Gm45058-201ENSMUST00000205810 766 ntBASIC20.18■□□□□ 0.82
HttP42859 Mtag2-201ENSMUST00000058665 714 ntBASIC20.18■□□□□ 0.82
HttP42859 Ptar1-201ENSMUST00000099560 2064 ntAPPRIS P1 TSL 5 BASIC20.17■□□□□ 0.82
HttP42859 Ccdc59-201ENSMUST00000020049 1813 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
HttP42859 Hint2-201ENSMUST00000030192 610 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
HttP42859 Ltbr-201ENSMUST00000032489 2107 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
HttP42859 Espn-211ENSMUST00000105657 1375 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
HttP42859 Sult4a1-201ENSMUST00000082365 2383 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
HttP42859 4930554G22Rik-201ENSMUST00000196102 686 ntBASIC20.17■□□□□ 0.82
HttP42859 Pfdn4-201ENSMUST00000063682 935 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
HttP42859 Cyp2u1-203ENSMUST00000200236 1716 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
HttP42859 Eefsec-206ENSMUST00000205179 2208 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
HttP42859 Rsrc1-202ENSMUST00000065047 2736 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
HttP42859 P2rx2-201ENSMUST00000058016 1895 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
HttP42859 Fam207a-201ENSMUST00000045454 2394 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
HttP42859 Hpdl-201ENSMUST00000055436 1804 ntAPPRIS P1 BASIC20.16■□□□□ 0.82
HttP42859 Rpl19-ps10-201ENSMUST00000205555 330 ntBASIC20.16■□□□□ 0.82
HttP42859 Prr22-201ENSMUST00000168666 1350 ntAPPRIS P1 TSL 3 BASIC20.16■□□□□ 0.82
HttP42859 Gm45631-201ENSMUST00000210318 1244 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
HttP42859 Mapk11-201ENSMUST00000088823 2440 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Retrieved 100 of 76,532 protein–RNA pairs in 28.4 ms