Protein–RNA interactions for Protein: P27548

Cd40lg, CD40 ligand, mousemouse

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cd40lgP27548 Pus1-201ENSMUST00000031481 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
Cd40lgP27548 Pex11b-202ENSMUST00000118557 2424 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Cd40lgP27548 Col15a1-202ENSMUST00000102917 5172 ntAPPRIS P2 TSL 1 (best) BASIC17.15■□□□□ 0.34
Cd40lgP27548 Il23a-201ENSMUST00000026449 1360 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Cd40lgP27548 Sys1-202ENSMUST00000109352 2001 ntAPPRIS P1 TSL 5 BASIC17.14■□□□□ 0.34
Cd40lgP27548 Itgb4-205ENSMUST00000106461 6208 ntAPPRIS ALT2 TSL 5 BASIC17.14■□□□□ 0.33
Cd40lgP27548 Zbed3-202ENSMUST00000221807 1945 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Cd40lgP27548 Ogfod2-202ENSMUST00000119269 1474 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
Cd40lgP27548 Tcp11-203ENSMUST00000114836 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
Cd40lgP27548 Hist2h3c2-201ENSMUST00000167403 1020 ntAPPRIS P1 BASIC17.14■□□□□ 0.33
Cd40lgP27548 Gm4553-201ENSMUST00000168049 714 ntAPPRIS ALT2 BASIC17.14■□□□□ 0.33
Cd40lgP27548 Uncx-202ENSMUST00000174792 1196 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
Cd40lgP27548 Gm36210-201ENSMUST00000210663 1279 ntAPPRIS P1 TSL 5 BASIC17.14■□□□□ 0.33
Cd40lgP27548 Gm10033-202ENSMUST00000211874 928 ntBASIC17.14■□□□□ 0.33
Cd40lgP27548 Ttc39a-203ENSMUST00000106619 1778 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
Cd40lgP27548 Cdc37l1-205ENSMUST00000224599 1769 ntBASIC17.14■□□□□ 0.33
Cd40lgP27548 Sfr1-201ENSMUST00000099353 1583 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Cd40lgP27548 Atp8b1-201ENSMUST00000025482 6440 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Cd40lgP27548 Ccdc102a-201ENSMUST00000077955 2304 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Cd40lgP27548 Tsen54-202ENSMUST00000106481 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
Cd40lgP27548 3010003L21Rik-201ENSMUST00000047953 1729 ntTSL 5 BASIC17.13■□□□□ 0.33
Cd40lgP27548 Dact2-201ENSMUST00000053218 2808 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Cd40lgP27548 Rab5a-201ENSMUST00000017975 2357 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Cd40lgP27548 Cdh4-203ENSMUST00000108911 1208 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
Cd40lgP27548 Gm27405-201ENSMUST00000184201 112 ntBASIC17.13■□□□□ 0.33
Cd40lgP27548 A730056A06Rik-202ENSMUST00000206959 526 ntTSL 3 BASIC17.13■□□□□ 0.33
Cd40lgP27548 Faim-201ENSMUST00000035038 1019 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
Cd40lgP27548 Zfp653-201ENSMUST00000043922 2108 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
Cd40lgP27548 Vkorc1l1-202ENSMUST00000073945 650 ntTSL 2 BASIC17.13■□□□□ 0.33
Cd40lgP27548 Fkbp9-201ENSMUST00000031795 3009 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Cd40lgP27548 Clint1-202ENSMUST00000109261 3365 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
Cd40lgP27548 Mrpl12-201ENSMUST00000043627 1316 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Cd40lgP27548 Myo5a-214ENSMUST00000155282 6372 ntAPPRIS P5 TSL 5 BASIC17.13■□□□□ 0.33
Cd40lgP27548 D030062O11Rik-201ENSMUST00000192660 2806 ntBASIC17.13■□□□□ 0.33
Cd40lgP27548 Ppp1r3f-205ENSMUST00000150787 4760 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
Cd40lgP27548 Dll3-201ENSMUST00000108315 2618 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Cd40lgP27548 Matn4-203ENSMUST00000109358 2056 ntTSL 5 BASIC17.12■□□□□ 0.33
Cd40lgP27548 Etnk1-203ENSMUST00000204947 1791 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Cd40lgP27548 Atp6v0a2-201ENSMUST00000037865 5345 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Cd40lgP27548 Ltbr-201ENSMUST00000032489 2107 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Cd40lgP27548 Ero1l-201ENSMUST00000022378 4418 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Cd40lgP27548 Tmem250-ps-201ENSMUST00000133808 2483 ntTSL 2 BASIC17.12■□□□□ 0.33
Cd40lgP27548 Fzd5-202ENSMUST00000116133 2895 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Cd40lgP27548 Klhl32-201ENSMUST00000084781 2287 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Cd40lgP27548 Gm16505-202ENSMUST00000220976 1626 ntTSL 5 BASIC17.12■□□□□ 0.33
Cd40lgP27548 Snhg6-203ENSMUST00000182580 473 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Cd40lgP27548 Camkk2-202ENSMUST00000196742 1084 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Cd40lgP27548 Gm7291-201ENSMUST00000199147 382 ntBASIC17.12■□□□□ 0.33
Cd40lgP27548 Gm6916-201ENSMUST00000205277 828 ntTSL 3 BASIC17.12■□□□□ 0.33
Cd40lgP27548 Ap4s1-201ENSMUST00000021338 1035 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Cd40lgP27548 Erh-205ENSMUST00000218740 981 ntTSL 2 BASIC17.12■□□□□ 0.33
Cd40lgP27548 AC121965.1-201ENSMUST00000221422 861 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Cd40lgP27548 Gm9970-201ENSMUST00000068997 558 ntAPPRIS P1 BASIC17.12■□□□□ 0.33
Cd40lgP27548 Dmwd-202ENSMUST00000108479 2388 ntAPPRIS ALT2 TSL 5 BASIC17.12■□□□□ 0.33
Cd40lgP27548 Cadps2-212ENSMUST00000163871 4969 ntAPPRIS ALT2 TSL 5 BASIC17.12■□□□□ 0.33
Cd40lgP27548 Ccdc34-201ENSMUST00000028580 2070 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Cd40lgP27548 Klhl25-203ENSMUST00000205612 1343 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Cd40lgP27548 Spry1-202ENSMUST00000108107 2773 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Cd40lgP27548 1700008J07Rik-201ENSMUST00000185351 2432 ntBASIC17.11■□□□□ 0.33
Cd40lgP27548 5730507C01Rik-201ENSMUST00000063216 2431 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
Cd40lgP27548 Naif1-201ENSMUST00000048431 4650 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Cd40lgP27548 Smyd2-201ENSMUST00000027897 1680 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Cd40lgP27548 Gm11762-201ENSMUST00000135630 1705 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Cd40lgP27548 C230096K16Rik-201ENSMUST00000198074 1722 ntBASIC17.11■□□□□ 0.33
Cd40lgP27548 Gadd45b-201ENSMUST00000015456 1284 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Cd40lgP27548 CT030146.1-201ENSMUST00000220919 217 ntBASIC17.11■□□□□ 0.33
Cd40lgP27548 Dtnbp1-208ENSMUST00000222805 1231 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Cd40lgP27548 Rasl10a-201ENSMUST00000037218 1110 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Cd40lgP27548 D830050J10Rik-202ENSMUST00000203858 1813 ntBASIC17.11■□□□□ 0.33
Cd40lgP27548 Tedc1-201ENSMUST00000049271 2441 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Cd40lgP27548 Adrb1-201ENSMUST00000038949 2491 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
Cd40lgP27548 Jmjd7-201ENSMUST00000044675 1373 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Cd40lgP27548 Pard3-209ENSMUST00000160272 5815 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Cd40lgP27548 Ankrd63-201ENSMUST00000104937 4861 ntAPPRIS P1 BASIC17.1■□□□□ 0.33
Cd40lgP27548 Col9a3-203ENSMUST00000132527 3046 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
Cd40lgP27548 Edem1-201ENSMUST00000089162 5817 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Cd40lgP27548 Pten-201ENSMUST00000013807 8292 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Cd40lgP27548 Aurkaip1-203ENSMUST00000105592 1029 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
Cd40lgP27548 1700125G02Rik-201ENSMUST00000154947 519 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Cd40lgP27548 Gm26571-201ENSMUST00000181399 666 ntBASIC17.1■□□□□ 0.33
Cd40lgP27548 Rab6b-202ENSMUST00000189134 716 ntTSL 3 BASIC17.1■□□□□ 0.33
Cd40lgP27548 AC164629.5-201ENSMUST00000220387 632 ntBASIC17.1■□□□□ 0.33
Cd40lgP27548 Foxa2-201ENSMUST00000047315 2128 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
Cd40lgP27548 Cystm1-201ENSMUST00000050584 831 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Cd40lgP27548 Klf13-201ENSMUST00000063694 6396 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Cd40lgP27548 Fgfr2-217ENSMUST00000124096 2425 ntTSL 5 BASIC17.1■□□□□ 0.33
Cd40lgP27548 Rcor3-203ENSMUST00000192128 1578 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
Cd40lgP27548 Gm13830-204ENSMUST00000149609 1851 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Cd40lgP27548 Fam49b-207ENSMUST00000228226 1896 ntAPPRIS P1 BASIC17.1■□□□□ 0.33
Cd40lgP27548 Apaf1-208ENSMUST00000162618 5151 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
Cd40lgP27548 Lhx1-204ENSMUST00000184646 1201 ntTSL 5 BASIC17.09■□□□□ 0.33
Cd40lgP27548 D830036C21Rik-201ENSMUST00000207444 453 ntTSL 3 BASIC17.09■□□□□ 0.33
Cd40lgP27548 Gm7514-201ENSMUST00000209475 934 ntBASIC17.09■□□□□ 0.33
Cd40lgP27548 Ccdc84-211ENSMUST00000217270 681 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Cd40lgP27548 Hikeshi-201ENSMUST00000075010 715 ntTSL 3 BASIC17.09■□□□□ 0.33
Cd40lgP27548 Cyp4f13-201ENSMUST00000075253 1752 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Cd40lgP27548 Fbxw2-206ENSMUST00000113080 1923 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Cd40lgP27548 Nhlh1-201ENSMUST00000059794 2464 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Cd40lgP27548 Slc30a10-201ENSMUST00000061093 5836 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Cd40lgP27548 Prmt9-202ENSMUST00000118622 2768 ntAPPRIS ALT2 TSL 5 BASIC17.08■□□□□ 0.33
Retrieved 100 of 76,532 protein–RNA pairs in 47.7 ms