Protein–RNA interactions for Protein: P09027

Hoxd3, Homeobox protein Hox-D3, mousemouse

Predictions only

Length 433 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hoxd3P09027 Ick-201ENSMUST00000009972 873 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
Hoxd3P09027 Adcy3-202ENSMUST00000124505 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Hoxd3P09027 Stx4a-201ENSMUST00000033075 1456 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Hoxd3P09027 Cracr2b-201ENSMUST00000053670 1698 ntAPPRIS P2 TSL 1 (best) BASIC14.48□□□□□ -0.09
Hoxd3P09027 Usp36-202ENSMUST00000106296 5655 ntAPPRIS P1 TSL 5 BASIC14.48□□□□□ -0.09
Hoxd3P09027 Ltbp4-205ENSMUST00000121175 5118 ntAPPRIS ALT2 TSL 1 (best) BASIC14.48□□□□□ -0.09
Hoxd3P09027 Plin1-202ENSMUST00000178257 1841 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Hoxd3P09027 Chtop-202ENSMUST00000049937 2012 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Hoxd3P09027 Map2k2-207ENSMUST00000143517 2405 ntAPPRIS P3 TSL 1 (best) BASIC14.47□□□□□ -0.09
Hoxd3P09027 Ahcyl1-201ENSMUST00000029490 3863 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Hoxd3P09027 Pacsin2-201ENSMUST00000056177 2795 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Hoxd3P09027 6030419C18Rik-201ENSMUST00000085658 2139 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Hoxd3P09027 Ypel3-204ENSMUST00000106359 469 ntTSL 5 BASIC14.47□□□□□ -0.09
Hoxd3P09027 Gm12669-201ENSMUST00000122162 1009 ntBASIC14.47□□□□□ -0.09
Hoxd3P09027 Tspan2os-201ENSMUST00000146624 590 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
Hoxd3P09027 1700067K01Rik-203ENSMUST00000172548 986 ntAPPRIS P2 TSL 1 (best) BASIC14.47□□□□□ -0.09
Hoxd3P09027 Gm26971-201ENSMUST00000182423 1072 ntBASIC14.47□□□□□ -0.09
Hoxd3P09027 Rps2-ps11-201ENSMUST00000195283 868 ntBASIC14.47□□□□□ -0.09
Hoxd3P09027 Gm10153-202ENSMUST00000210290 963 ntAPPRIS P1 BASIC14.47□□□□□ -0.09
Hoxd3P09027 AC112142.1-201ENSMUST00000228796 918 ntBASIC14.47□□□□□ -0.09
Hoxd3P09027 Avp-201ENSMUST00000046001 577 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Hoxd3P09027 Gm5540-201ENSMUST00000131852 1848 ntBASIC14.47□□□□□ -0.09
Hoxd3P09027 Ppm1m-203ENSMUST00000140761 1846 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Hoxd3P09027 Cd82-201ENSMUST00000028644 1824 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Hoxd3P09027 Nt5c3b-204ENSMUST00000107398 1635 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
Hoxd3P09027 Rchy1-201ENSMUST00000031345 1967 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Hoxd3P09027 Gal3st3-201ENSMUST00000061169 2421 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
Hoxd3P09027 3110062M04Rik-202ENSMUST00000115006 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC14.46□□□□□ -0.09
Hoxd3P09027 1700065D16Rik-204ENSMUST00000189348 1540 ntTSL 2 BASIC14.46□□□□□ -0.09
Hoxd3P09027 Cdo1-201ENSMUST00000035804 1530 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
Hoxd3P09027 Serbp1-211ENSMUST00000204293 1336 ntAPPRIS ALT2 TSL 1 (best) BASIC14.46□□□□□ -0.09
Hoxd3P09027 Gm15441-202ENSMUST00000107095 1653 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
Hoxd3P09027 Notch4-201ENSMUST00000015612 6591 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
Hoxd3P09027 Sdsl-201ENSMUST00000031594 1476 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
Hoxd3P09027 Usp36-201ENSMUST00000092382 5609 ntAPPRIS P1 TSL 5 BASIC14.46□□□□□ -0.09
Hoxd3P09027 Slc30a9-204ENSMUST00000162372 5711 ntAPPRIS P3 TSL 1 (best) BASIC14.46□□□□□ -0.09
Hoxd3P09027 Tfam-203ENSMUST00000121685 899 ntAPPRIS ALT2 TSL 2 BASIC14.46□□□□□ -0.09
Hoxd3P09027 Gm27011-201ENSMUST00000182352 972 ntBASIC14.46□□□□□ -0.09
Hoxd3P09027 Gm29179-208ENSMUST00000190450 1137 ntTSL 5 BASIC14.46□□□□□ -0.09
Hoxd3P09027 Rab34-209ENSMUST00000207728 567 ntTSL 2 BASIC14.46□□□□□ -0.09
Hoxd3P09027 Gm45890-201ENSMUST00000212043 1026 ntTSL 5 BASIC14.46□□□□□ -0.09
Hoxd3P09027 Sap30-201ENSMUST00000034022 1178 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
Hoxd3P09027 Gm4968-201ENSMUST00000071458 858 ntBASIC14.46□□□□□ -0.09
Hoxd3P09027 BC107364-201ENSMUST00000093126 1159 ntAPPRIS P4 TSL 1 (best) BASIC14.46□□□□□ -0.09
Hoxd3P09027 BC107364-202ENSMUST00000098841 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC14.46□□□□□ -0.09
Hoxd3P09027 Gm16262-201ENSMUST00000162306 1751 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
Hoxd3P09027 Aifm2-201ENSMUST00000067857 1442 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
Hoxd3P09027 Wasf3-201ENSMUST00000016143 5196 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
Hoxd3P09027 Smarcd3-208ENSMUST00000195943 1712 ntTSL 5 BASIC14.46□□□□□ -0.1
Hoxd3P09027 Smarcd3-201ENSMUST00000030791 1735 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
Hoxd3P09027 Nudt3-201ENSMUST00000025050 2193 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
Hoxd3P09027 Bend4-204ENSMUST00000201972 8268 ntAPPRIS P1 TSL 5 BASIC14.46□□□□□ -0.1
Hoxd3P09027 Mtcl1-201ENSMUST00000086693 7221 ntAPPRIS P3 TSL 1 (best) BASIC14.45□□□□□ -0.1
Hoxd3P09027 Caskin1-201ENSMUST00000024958 6172 ntAPPRIS P1 TSL 5 BASIC14.45□□□□□ -0.1
Hoxd3P09027 Rpl26-202ENSMUST00000101014 657 ntAPPRIS ALT1 TSL 5 BASIC14.45□□□□□ -0.1
Hoxd3P09027 Gm44238-201ENSMUST00000203300 353 ntTSL 3 BASIC14.45□□□□□ -0.1
Hoxd3P09027 Acot7-201ENSMUST00000030779 1425 ntAPPRIS ALT2 TSL 1 (best) BASIC14.45□□□□□ -0.1
Hoxd3P09027 Mmp15-201ENSMUST00000034243 5135 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Hoxd3P09027 Kcnt1-203ENSMUST00000114172 5219 ntAPPRIS ALT2 TSL 1 (best) BASIC14.45□□□□□ -0.1
Hoxd3P09027 H19-202ENSMUST00000136359 2286 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
Hoxd3P09027 Spry1-202ENSMUST00000108107 2773 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Hoxd3P09027 Atxn2-201ENSMUST00000051950 4472 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Hoxd3P09027 Vstm2b-201ENSMUST00000044705 2627 ntAPPRIS P1 TSL 5 BASIC14.45□□□□□ -0.1
Hoxd3P09027 Slc11a1-211ENSMUST00000187516 1893 ntAPPRIS ALT2 TSL 5 BASIC14.44□□□□□ -0.1
Hoxd3P09027 Sorcs2-201ENSMUST00000037370 5707 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Hoxd3P09027 Khk-204ENSMUST00000201621 1583 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Hoxd3P09027 Tcp11-201ENSMUST00000042692 1984 ntAPPRIS P3 TSL 1 (best) BASIC14.44□□□□□ -0.1
Hoxd3P09027 Ndufa12-204ENSMUST00000179990 566 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
Hoxd3P09027 AC142113.1-201ENSMUST00000214931 801 ntTSL 5 BASIC14.44□□□□□ -0.1
Hoxd3P09027 Selenom-201ENSMUST00000094469 707 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Hoxd3P09027 Rfk-201ENSMUST00000025617 2482 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Hoxd3P09027 Wdr20-205ENSMUST00000193053 1351 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
Hoxd3P09027 Gpc3-202ENSMUST00000114857 1880 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
Hoxd3P09027 Gm43545-201ENSMUST00000196765 2779 ntBASIC14.44□□□□□ -0.1
Hoxd3P09027 Fmnl2-201ENSMUST00000049483 5461 ntTSL 5 BASIC14.44□□□□□ -0.1
Hoxd3P09027 Chtop-207ENSMUST00000107346 1321 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
Hoxd3P09027 Gm43859-201ENSMUST00000200075 1412 ntBASIC14.43□□□□□ -0.1
Hoxd3P09027 Arrb2-205ENSMUST00000108568 1777 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
Hoxd3P09027 Gapvd1-201ENSMUST00000028224 5695 ntAPPRIS P2 TSL 1 (best) BASIC14.43□□□□□ -0.1
Hoxd3P09027 Kcnq2-203ENSMUST00000081528 2382 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
Hoxd3P09027 Nhlh1-201ENSMUST00000059794 2464 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Hoxd3P09027 Ntmt1-201ENSMUST00000041830 1387 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Hoxd3P09027 Fgfrl1-201ENSMUST00000013633 2329 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Hoxd3P09027 Dmrt1-201ENSMUST00000025755 2340 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Hoxd3P09027 Dlg1-202ENSMUST00000064477 4663 ntAPPRIS P3 TSL 1 (best) BASIC14.43□□□□□ -0.1
Hoxd3P09027 Dnpep-204ENSMUST00000185797 2510 ntAPPRIS ALT2 TSL 1 (best) BASIC14.43□□□□□ -0.1
Hoxd3P09027 Dact2-201ENSMUST00000053218 2808 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Hoxd3P09027 Dvl3-203ENSMUST00000171572 2493 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
Hoxd3P09027 Trmt61a-202ENSMUST00000168338 2131 ntAPPRIS P1 TSL 5 BASIC14.42□□□□□ -0.1
Hoxd3P09027 Mrps16-201ENSMUST00000061444 2572 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Hoxd3P09027 Trabd-206ENSMUST00000169891 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
Hoxd3P09027 Ankrd40-203ENSMUST00000107818 3487 ntAPPRIS P3 TSL 5 BASIC14.42□□□□□ -0.1
Hoxd3P09027 Irgq-201ENSMUST00000049020 6083 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Hoxd3P09027 Snapc2-201ENSMUST00000011981 1536 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Hoxd3P09027 Rad1-201ENSMUST00000022856 1514 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Hoxd3P09027 Slc35d3-201ENSMUST00000059805 2630 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Hoxd3P09027 Gm37352-201ENSMUST00000193908 2181 ntBASIC14.42□□□□□ -0.1
Hoxd3P09027 Slc30a9-201ENSMUST00000113676 5648 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
Hoxd3P09027 Tcf7-202ENSMUST00000109071 1742 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Hoxd3P09027 Arpc5-202ENSMUST00000097536 1737 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
Retrieved 100 of 76,532 protein–RNA pairs in 20.2 ms