Protein–RNA interactions for Protein: O88544

Cops4, COP9 signalosome complex subunit 4, mousemouse

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cops4O88544 Dock9-202ENSMUST00000100299 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
Cops4O88544 Pwwp2b-201ENSMUST00000093993 3057 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
Cops4O88544 Gm6085-201ENSMUST00000182774 1470 ntBASIC17.22■□□□□ 0.35
Cops4O88544 Gp5-201ENSMUST00000061190 2196 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Cops4O88544 Zfp623-201ENSMUST00000037260 2463 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Cops4O88544 Slc10a4-201ENSMUST00000031127 2106 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Cops4O88544 Creld1-201ENSMUST00000032422 2306 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Cops4O88544 Hspa1l-201ENSMUST00000007248 2472 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Cops4O88544 Plk3-201ENSMUST00000076859 2378 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Cops4O88544 Rnf44-208ENSMUST00000128257 1689 ntTSL 5 BASIC17.21■□□□□ 0.35
Cops4O88544 Arid1a-205ENSMUST00000145664 8187 ntAPPRIS ALT2 TSL 2 BASIC17.21■□□□□ 0.35
Cops4O88544 Dctn3-203ENSMUST00000171641 885 ntTSL 3 BASIC17.21■□□□□ 0.35
Cops4O88544 Sumf1-206ENSMUST00000172188 723 ntTSL 5 BASIC17.21■□□□□ 0.35
Cops4O88544 Rnf187-202ENSMUST00000217262 711 ntAPPRIS P2 TSL 1 (best) BASIC17.21■□□□□ 0.35
Cops4O88544 AC161180.2-201ENSMUST00000222567 1015 ntAPPRIS P1 BASIC17.21■□□□□ 0.35
Cops4O88544 Gmcl1-201ENSMUST00000001185 2949 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Cops4O88544 Leng1-201ENSMUST00000019878 2222 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Cops4O88544 Znrf1-205ENSMUST00000172856 4600 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
Cops4O88544 Uhmk1-202ENSMUST00000123399 7775 ntTSL 5 BASIC17.21■□□□□ 0.35
Cops4O88544 Nr1d2-201ENSMUST00000090543 4663 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Cops4O88544 Spire1-203ENSMUST00000115050 5405 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.34
Cops4O88544 Gm27045-201ENSMUST00000182145 1402 ntBASIC17.21■□□□□ 0.34
Cops4O88544 Trpc4ap-201ENSMUST00000041059 3204 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.34
Cops4O88544 Cpeb2-204ENSMUST00000166713 6846 ntAPPRIS ALT2 TSL 5 BASIC17.21■□□□□ 0.34
Cops4O88544 Slc5a10-201ENSMUST00000051552 2261 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.34
Cops4O88544 Slc2a13-202ENSMUST00000109283 6536 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.34
Cops4O88544 Cyp4f15-204ENSMUST00000168171 2168 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.34
Cops4O88544 Ddx59-201ENSMUST00000027655 2166 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.34
Cops4O88544 Cdca4-202ENSMUST00000220899 1994 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Cops4O88544 Lrch3-208ENSMUST00000165616 1875 ntTSL 5 BASIC17.2■□□□□ 0.34
Cops4O88544 Lrrc47-201ENSMUST00000030894 3395 ntAPPRIS P2 TSL 1 (best) BASIC17.2■□□□□ 0.34
Cops4O88544 Maf1-205ENSMUST00000160853 1651 ntAPPRIS P2 TSL 1 (best) BASIC17.2■□□□□ 0.34
Cops4O88544 1700030C10Rik-201ENSMUST00000110971 1471 ntBASIC17.2■□□□□ 0.34
Cops4O88544 Crebbp-201ENSMUST00000023165 10820 ntAPPRIS P2 TSL 1 (best) BASIC17.2■□□□□ 0.34
Cops4O88544 Keap1-206ENSMUST00000216436 2498 ntAPPRIS ALT2 TSL 5 BASIC17.2■□□□□ 0.34
Cops4O88544 Notch4-201ENSMUST00000015612 6591 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Cops4O88544 Lrrc14-204ENSMUST00000137649 2832 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Cops4O88544 Zfp963-202ENSMUST00000154063 640 ntTSL 3 BASIC17.2■□□□□ 0.34
Cops4O88544 Btnl9-201ENSMUST00000046522 5273 ntAPPRIS P2 TSL 1 (best) BASIC17.2■□□□□ 0.34
Cops4O88544 Mpp3-203ENSMUST00000107167 2066 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
Cops4O88544 Whrn-205ENSMUST00000095038 2665 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
Cops4O88544 Mtrf1l-201ENSMUST00000019908 2588 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Cops4O88544 Ikbip-202ENSMUST00000020150 1328 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
Cops4O88544 Acvr2b-205ENSMUST00000215746 3175 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Cops4O88544 Kcnn2-208ENSMUST00000211323 2046 ntAPPRIS P2 TSL 1 (best) BASIC17.2■□□□□ 0.34
Cops4O88544 Grk6-201ENSMUST00000001115 2994 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
Cops4O88544 D16Ertd472e-202ENSMUST00000114219 1576 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Cops4O88544 Mrgprf-202ENSMUST00000117718 1935 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
Cops4O88544 Arhgef9-208ENSMUST00000128565 2285 ntTSL 5 BASIC17.19■□□□□ 0.34
Cops4O88544 Ptpra-201ENSMUST00000028769 3227 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Cops4O88544 Gm43042-201ENSMUST00000198676 1820 ntTSL 5 BASIC17.19■□□□□ 0.34
Cops4O88544 Pomgnt2-207ENSMUST00000217610 2413 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Cops4O88544 Ica1-203ENSMUST00000115519 1706 ntAPPRIS ALT2 TSL 5 BASIC17.19■□□□□ 0.34
Cops4O88544 Mindy2-201ENSMUST00000049031 8081 ntAPPRIS P2 TSL 1 (best) BASIC17.19■□□□□ 0.34
Cops4O88544 Nhlh1-201ENSMUST00000059794 2464 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Cops4O88544 Alad-201ENSMUST00000030090 1206 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Cops4O88544 C1ql4-201ENSMUST00000064462 874 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Cops4O88544 Ahcyl2-202ENSMUST00000102995 5155 ntAPPRIS ALT1 TSL 5 BASIC17.19■□□□□ 0.34
Cops4O88544 Rnf112-203ENSMUST00000102661 3118 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Cops4O88544 Hoxa1-202ENSMUST00000120363 2043 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
Cops4O88544 Lrig1-201ENSMUST00000032105 4831 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Cops4O88544 4930540M05Rik-201ENSMUST00000180527 2068 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
Cops4O88544 Sbf1-201ENSMUST00000123791 6190 ntAPPRIS P3 TSL 1 (best) BASIC17.19■□□□□ 0.34
Cops4O88544 Lrrc57-204ENSMUST00000102499 1961 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Cops4O88544 Tlcd1-202ENSMUST00000098545 2897 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
Cops4O88544 6030419C18Rik-201ENSMUST00000085658 2139 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Cops4O88544 Fam222a-201ENSMUST00000043650 2930 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Cops4O88544 0610040J01Rik-201ENSMUST00000081747 2008 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Cops4O88544 Gm5464-201ENSMUST00000100453 2156 ntAPPRIS P1 BASIC17.18■□□□□ 0.34
Cops4O88544 Nkx6-2-202ENSMUST00000106095 1299 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Cops4O88544 Fuz-214ENSMUST00000209132 853 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
Cops4O88544 Gltpd2-201ENSMUST00000057685 1216 ntAPPRIS P2 TSL 1 (best) BASIC17.18■□□□□ 0.34
Cops4O88544 Tagln-201ENSMUST00000034590 1595 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Cops4O88544 Metap1-201ENSMUST00000029804 2686 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Cops4O88544 Gm7856-201ENSMUST00000117514 1493 ntBASIC17.18■□□□□ 0.34
Cops4O88544 Rbm11-202ENSMUST00000114249 2750 ntAPPRIS ALT2 TSL 5 BASIC17.17■□□□□ 0.34
Cops4O88544 Fam46c-201ENSMUST00000061455 5640 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Cops4O88544 Wac-207ENSMUST00000167020 5208 ntAPPRIS P3 TSL 1 (best) BASIC17.17■□□□□ 0.34
Cops4O88544 Akt2-205ENSMUST00000108344 4544 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Cops4O88544 Gm43702-201ENSMUST00000198772 2546 ntBASIC17.17■□□□□ 0.34
Cops4O88544 Cnpy1-201ENSMUST00000117098 2661 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
Cops4O88544 Slc35a2-203ENSMUST00000115663 1527 ntAPPRIS P4 TSL 2 BASIC17.17■□□□□ 0.34
Cops4O88544 Nfib-206ENSMUST00000107248 3294 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
Cops4O88544 Cspg5-205ENSMUST00000199736 2107 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
Cops4O88544 Khdrbs2-201ENSMUST00000027226 2281 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Cops4O88544 Smox-205ENSMUST00000110182 985 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
Cops4O88544 H3f3a-207ENSMUST00000162814 724 ntAPPRIS P2 TSL 3 BASIC17.17■□□□□ 0.34
Cops4O88544 C2cd4c-202ENSMUST00000178228 2761 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Cops4O88544 Casd1-204ENSMUST00000181734 1063 ntTSL 5 BASIC17.17■□□□□ 0.34
Cops4O88544 Zfp580-202ENSMUST00000208570 693 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
Cops4O88544 Golgb1-201ENSMUST00000023534 498 ntBASIC17.17■□□□□ 0.34
Cops4O88544 Ccdc91-201ENSMUST00000032441 2459 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Cops4O88544 Nat14-201ENSMUST00000047309 1612 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Cops4O88544 Sort1-201ENSMUST00000102632 6796 ntAPPRIS P3 TSL 1 (best) BASIC17.17■□□□□ 0.34
Cops4O88544 Foxo3-202ENSMUST00000105501 1316 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
Cops4O88544 Bend4-204ENSMUST00000201972 8268 ntAPPRIS P1 TSL 5 BASIC17.17■□□□□ 0.34
Cops4O88544 Asb1-202ENSMUST00000086843 2490 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Cops4O88544 Letm1-201ENSMUST00000005431 5272 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Cops4O88544 Myh7b-201ENSMUST00000092995 6163 ntAPPRIS P1 TSL 5 BASIC17.16■□□□□ 0.34
Cops4O88544 Pacs2-207ENSMUST00000223502 3223 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
Retrieved 100 of 76,532 protein–RNA pairs in 19.8 ms