Protein–RNA interactions for Protein: E9Q735

Ube4a, Ubiquitin conjugation factor E4 A, mousemouse

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ube4aE9Q735 Tfg-202ENSMUST00000121554 716 ntAPPRIS ALT2 TSL 5 BASIC22.58■■□□□ 1.21
Ube4aE9Q735 Tpgs1-201ENSMUST00000020552 1143 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.21
Ube4aE9Q735 Gm44899-201ENSMUST00000207451 391 ntTSL 3 BASIC22.58■■□□□ 1.21
Ube4aE9Q735 Slc25a4-201ENSMUST00000034049 1925 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.21
Ube4aE9Q735 Slc26a10-201ENSMUST00000095270 2215 ntAPPRIS P2 TSL 5 BASIC22.58■■□□□ 1.2
Ube4aE9Q735 Rin3-202ENSMUST00000101114 2394 ntTSL 1 (best) BASIC22.57■■□□□ 1.2
Ube4aE9Q735 Foxp1-225ENSMUST00000177229 1848 ntAPPRIS ALT2 TSL 5 BASIC22.57■■□□□ 1.2
Ube4aE9Q735 Cav2-201ENSMUST00000000058 2733 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
Ube4aE9Q735 Wdr33-202ENSMUST00000082319 1152 ntTSL 1 (best) BASIC22.57■■□□□ 1.2
Ube4aE9Q735 Mrpl9-202ENSMUST00000196143 1657 ntAPPRIS ALT2 TSL 1 (best) BASIC22.57■■□□□ 1.2
Ube4aE9Q735 Myd88-201ENSMUST00000035092 1960 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
Ube4aE9Q735 Lhx8-201ENSMUST00000177846 2076 ntTSL 1 (best) BASIC22.57■■□□□ 1.2
Ube4aE9Q735 Mreg-201ENSMUST00000048860 2284 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
Ube4aE9Q735 Syncrip-201ENSMUST00000069221 9450 ntAPPRIS P3 TSL 1 (best) BASIC22.57■■□□□ 1.2
Ube4aE9Q735 Fcmr-201ENSMUST00000038829 1600 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
Ube4aE9Q735 Cpne7-201ENSMUST00000037900 2398 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
Ube4aE9Q735 Vstm2b-201ENSMUST00000044705 2627 ntAPPRIS P1 TSL 5 BASIC22.56■■□□□ 1.2
Ube4aE9Q735 Mob2-201ENSMUST00000084418 1490 ntAPPRIS P2 TSL 1 (best) BASIC22.56■■□□□ 1.2
Ube4aE9Q735 Eda-204ENSMUST00000113777 1056 ntTSL 5 BASIC22.56■■□□□ 1.2
Ube4aE9Q735 Gm10698-201ENSMUST00000182663 604 ntBASIC22.56■■□□□ 1.2
Ube4aE9Q735 Wnt10b-205ENSMUST00000226846 1204 ntBASIC22.56■■□□□ 1.2
Ube4aE9Q735 AC163280.1-201ENSMUST00000228194 1100 ntBASIC22.56■■□□□ 1.2
Ube4aE9Q735 Eda-201ENSMUST00000071453 1152 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
Ube4aE9Q735 Sept5-201ENSMUST00000096987 2127 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
Ube4aE9Q735 Depdc7-201ENSMUST00000028595 1801 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
Ube4aE9Q735 Fgf3-201ENSMUST00000105898 2299 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
Ube4aE9Q735 Fam213a-201ENSMUST00000022317 1537 ntAPPRIS P3 TSL 1 (best) BASIC22.56■■□□□ 1.2
Ube4aE9Q735 Gpr137-202ENSMUST00000099774 1434 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
Ube4aE9Q735 Ccdc59-201ENSMUST00000020049 1813 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
Ube4aE9Q735 Naxd-201ENSMUST00000033901 1359 ntTSL 2 BASIC22.55■■□□□ 1.2
Ube4aE9Q735 Sept7-201ENSMUST00000115272 2533 ntAPPRIS ALT1 TSL 5 BASIC22.55■■□□□ 1.2
Ube4aE9Q735 Hsbp1-201ENSMUST00000034300 1208 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
Ube4aE9Q735 Tmem91-201ENSMUST00000079439 877 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
Ube4aE9Q735 Ahsa2-201ENSMUST00000020529 3023 ntAPPRIS P3 TSL 1 (best) BASIC22.55■■□□□ 1.2
Ube4aE9Q735 Eif2b4-212ENSMUST00000202758 1767 ntTSL 5 BASIC22.55■■□□□ 1.2
Ube4aE9Q735 Espn-208ENSMUST00000105654 1566 ntTSL 5 BASIC22.55■■□□□ 1.2
Ube4aE9Q735 B130046B21Rik-201ENSMUST00000181510 2216 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
Ube4aE9Q735 Gm15751-201ENSMUST00000134552 1862 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
Ube4aE9Q735 Aqp5-201ENSMUST00000088200 1376 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
Ube4aE9Q735 1700028E10Rik-201ENSMUST00000181114 2034 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
Ube4aE9Q735 Glrx5-201ENSMUST00000021522 2925 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
Ube4aE9Q735 Dnajc19-204ENSMUST00000120805 551 ntTSL 2 BASIC22.54■■□□□ 1.2
Ube4aE9Q735 Gm13158-201ENSMUST00000122007 736 ntBASIC22.54■■□□□ 1.2
Ube4aE9Q735 2700033N17Rik-201ENSMUST00000140185 721 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
Ube4aE9Q735 H2-K2-201ENSMUST00000174250 1049 ntBASIC22.54■■□□□ 1.2
Ube4aE9Q735 Stard10-211ENSMUST00000210192 1258 ntAPPRIS P1 TSL 5 BASIC22.54■■□□□ 1.2
Ube4aE9Q735 Pstk-201ENSMUST00000075610 1135 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
Ube4aE9Q735 Donson-203ENSMUST00000117159 2215 ntAPPRIS ALT2 TSL 1 (best) BASIC22.54■■□□□ 1.2
Ube4aE9Q735 Flg-201ENSMUST00000050758 1488 ntBASIC22.54■■□□□ 1.2
Ube4aE9Q735 Hpca-202ENSMUST00000095807 1666 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
Ube4aE9Q735 Zbtb7c-202ENSMUST00000167921 2147 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
Ube4aE9Q735 Creb1-207ENSMUST00000187811 1255 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
Ube4aE9Q735 AC154649.1-201ENSMUST00000227392 384 ntBASIC22.53■■□□□ 1.2
Ube4aE9Q735 Mrps16-201ENSMUST00000061444 2572 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
Ube4aE9Q735 Csnk1a1-210ENSMUST00000170862 2259 ntAPPRIS ALT1 TSL 5 BASIC22.52■■□□□ 1.2
Ube4aE9Q735 Gm15378-201ENSMUST00000121894 207 ntBASIC22.52■■□□□ 1.2
Ube4aE9Q735 Gm6576-201ENSMUST00000169678 883 ntBASIC22.52■■□□□ 1.2
Ube4aE9Q735 Ccnd2-202ENSMUST00000201066 983 ntTSL 2 BASIC22.52■■□□□ 1.2
Ube4aE9Q735 Gm42882-201ENSMUST00000201788 506 ntTSL 3 BASIC22.52■■□□□ 1.2
Ube4aE9Q735 Elof1-204ENSMUST00000214394 567 ntAPPRIS P1 TSL 2 BASIC22.52■■□□□ 1.2
Ube4aE9Q735 Arhgef33-211ENSMUST00000225658 473 ntBASIC22.52■■□□□ 1.2
Ube4aE9Q735 Bricd5-201ENSMUST00000054946 997 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
Ube4aE9Q735 Dnajb2-201ENSMUST00000055223 1199 ntTSL 5 BASIC22.52■■□□□ 1.2
Ube4aE9Q735 Ubtf-213ENSMUST00000178839 4580 ntAPPRIS ALT2 TSL 1 (best) BASIC22.52■■□□□ 1.2
Ube4aE9Q735 Kcnip2-202ENSMUST00000079431 2302 ntAPPRIS ALT1 TSL 1 (best) BASIC22.52■■□□□ 1.2
Ube4aE9Q735 Ube2d2a-202ENSMUST00000170693 2483 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
Ube4aE9Q735 Gm11927-201ENSMUST00000118472 759 ntBASIC22.51■■□□□ 1.19
Ube4aE9Q735 2900072N19Rik-201ENSMUST00000123840 806 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
Ube4aE9Q735 Tex30-204ENSMUST00000128190 1275 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
Ube4aE9Q735 Mir6982-201ENSMUST00000184354 68 ntBASIC22.51■■□□□ 1.19
Ube4aE9Q735 1600023N17Rik-201ENSMUST00000196242 1007 ntBASIC22.51■■□□□ 1.19
Ube4aE9Q735 Exosc3-201ENSMUST00000030003 1077 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
Ube4aE9Q735 Mfn1-201ENSMUST00000091257 4562 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
Ube4aE9Q735 Magi3-202ENSMUST00000121198 5912 ntAPPRIS ALT2 TSL 5 BASIC22.51■■□□□ 1.19
Ube4aE9Q735 Lmtk3-202ENSMUST00000120005 4997 ntAPPRIS P2 TSL 1 (best) BASIC22.51■■□□□ 1.19
Ube4aE9Q735 Cyp2u1-203ENSMUST00000200236 1716 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
Ube4aE9Q735 Brsk2-205ENSMUST00000172652 2501 ntTSL 5 BASIC22.51■■□□□ 1.19
Ube4aE9Q735 Rela-201ENSMUST00000025867 2716 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
Ube4aE9Q735 Dmrta2-201ENSMUST00000061187 2922 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
Ube4aE9Q735 Smad4-201ENSMUST00000025393 3384 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
Ube4aE9Q735 Flot1-201ENSMUST00000001569 1825 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
Ube4aE9Q735 Gm22325-201ENSMUST00000158904 308 ntBASIC22.5■■□□□ 1.19
Ube4aE9Q735 P2ry2-202ENSMUST00000178340 2137 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
Ube4aE9Q735 Desi2-204ENSMUST00000161075 2590 ntTSL 1 (best) BASIC22.5■■□□□ 1.19
Ube4aE9Q735 Coq10b-201ENSMUST00000027125 1733 ntAPPRIS ALT2 TSL 1 (best) BASIC22.5■■□□□ 1.19
Ube4aE9Q735 Zfp691-202ENSMUST00000106355 1588 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
Ube4aE9Q735 Csrp2-201ENSMUST00000020403 1384 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
Ube4aE9Q735 Ccdc124-201ENSMUST00000007865 1356 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
Ube4aE9Q735 Kcnc3-201ENSMUST00000107906 5062 ntAPPRIS ALT2 TSL 1 (best) BASIC22.5■■□□□ 1.19
Ube4aE9Q735 Dgat1-201ENSMUST00000023214 1888 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
Ube4aE9Q735 Tm9sf3-201ENSMUST00000025989 6144 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
Ube4aE9Q735 Trim72-202ENSMUST00000106248 2134 ntAPPRIS P1 TSL 5 BASIC22.49■■□□□ 1.19
Ube4aE9Q735 Ccdc107-202ENSMUST00000107922 865 ntAPPRIS ALT2 TSL 2 BASIC22.49■■□□□ 1.19
Ube4aE9Q735 Gm2479-201ENSMUST00000173312 1053 ntTSL 3 BASIC22.49■■□□□ 1.19
Ube4aE9Q735 4931413I07Rik-201ENSMUST00000173637 764 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
Ube4aE9Q735 Gm29241-201ENSMUST00000189260 1096 ntBASIC22.49■■□□□ 1.19
Ube4aE9Q735 Ccdc107-201ENSMUST00000030181 817 ntAPPRIS P2 TSL 1 (best) BASIC22.49■■□□□ 1.19
Ube4aE9Q735 Nnat-201ENSMUST00000088484 458 ntTSL 2 BASIC22.49■■□□□ 1.19
Ube4aE9Q735 Meis3-205ENSMUST00000176506 1839 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
Ube4aE9Q735 C430049E01Rik-201ENSMUST00000207913 1820 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
Retrieved 100 of 76,532 protein–RNA pairs in 18.6 ms