Protein–RNA interactions for Protein: Q8BY87

Usp47, Ubiquitin carboxyl-terminal hydrolase 47, mousemouse

Predictions only

Length 1,376 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp47Q8BY87 Usp45-201ENSMUST00000040429 5861 ntAPPRIS ALT2 TSL 1 (best) BASIC11.1□□□□□ -0.63
Usp47Q8BY87 Ep400-203ENSMUST00000112435 10420 ntTSL 5 BASIC11.1□□□□□ -0.63
Usp47Q8BY87 Gosr1-201ENSMUST00000010536 4289 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
Usp47Q8BY87 Krt39-202ENSMUST00000107445 1633 ntAPPRIS P1 TSL 5 BASIC11.1□□□□□ -0.63
Usp47Q8BY87 Lyve1-201ENSMUST00000033050 2893 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
Usp47Q8BY87 Sdad1-203ENSMUST00000201143 2156 ntAPPRIS ALT1 TSL 5 BASIC11.09□□□□□ -0.63
Usp47Q8BY87 Mkl2-201ENSMUST00000009713 5815 ntAPPRIS ALT2 TSL 5 BASIC11.09□□□□□ -0.63
Usp47Q8BY87 Tns1-208ENSMUST00000187584 9916 ntAPPRIS ALT2 TSL 5 BASIC11.09□□□□□ -0.63
Usp47Q8BY87 Nasp-203ENSMUST00000081182 1461 ntTSL 1 (best) BASIC11.09□□□□□ -0.63
Usp47Q8BY87 Gm16427-203ENSMUST00000201432 2042 ntAPPRIS P5 TSL 1 (best) BASIC11.09□□□□□ -0.63
Usp47Q8BY87 Cenpl-201ENSMUST00000028035 4883 ntTSL 1 (best) BASIC11.09□□□□□ -0.63
Usp47Q8BY87 Olfr56-206ENSMUST00000203810 1990 ntAPPRIS P1 TSL 5 BASIC11.09□□□□□ -0.63
Usp47Q8BY87 Olfr1360-202ENSMUST00000205788 1988 ntAPPRIS P1 TSL 5 BASIC11.09□□□□□ -0.63
Usp47Q8BY87 Dmd-202ENSMUST00000113992 1858 ntTSL 1 (best) BASIC11.09□□□□□ -0.63
Usp47Q8BY87 Plscr2-201ENSMUST00000034932 1874 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
Usp47Q8BY87 Zfp229-201ENSMUST00000065871 4525 ntAPPRIS P1 TSL 3 BASIC11.09□□□□□ -0.63
Usp47Q8BY87 Gm44509-201ENSMUST00000205400 1324 ntBASIC11.09□□□□□ -0.63
Usp47Q8BY87 Tcp10a-204ENSMUST00000138222 1838 ntAPPRIS ALT2 TSL 5 BASIC11.09□□□□□ -0.63
Usp47Q8BY87 Olfr1019-201ENSMUST00000102634 933 ntAPPRIS P1 BASIC11.09□□□□□ -0.63
Usp47Q8BY87 Gm22927-201ENSMUST00000104268 131 ntBASIC11.09□□□□□ -0.63
Usp47Q8BY87 Gm26429-201ENSMUST00000104829 110 ntBASIC11.09□□□□□ -0.63
Usp47Q8BY87 Eif2s3x-202ENSMUST00000113922 1103 ntTSL 1 (best) BASIC11.09□□□□□ -0.63
Usp47Q8BY87 Gm12024-201ENSMUST00000118819 1253 ntBASIC11.09□□□□□ -0.63
Usp47Q8BY87 Gm11962-201ENSMUST00000145746 255 ntBASIC11.09□□□□□ -0.63
Usp47Q8BY87 Gm15904-201ENSMUST00000154515 487 ntTSL 3 BASIC11.09□□□□□ -0.63
Usp47Q8BY87 Gm22687-201ENSMUST00000158301 105 ntBASIC11.09□□□□□ -0.63
Usp47Q8BY87 Vmn1r-ps18-201ENSMUST00000176901 876 ntBASIC11.09□□□□□ -0.63
Usp47Q8BY87 Gm27595-201ENSMUST00000184579 112 ntBASIC11.09□□□□□ -0.63
Usp47Q8BY87 Gm38203-201ENSMUST00000191815 245 ntBASIC11.09□□□□□ -0.63
Usp47Q8BY87 Gm37977-201ENSMUST00000193096 721 ntBASIC11.09□□□□□ -0.63
Usp47Q8BY87 Gm1647-201ENSMUST00000195406 735 ntTSL 1 (best) BASIC11.09□□□□□ -0.63
Usp47Q8BY87 Gm43287-201ENSMUST00000197747 600 ntBASIC11.09□□□□□ -0.63
Usp47Q8BY87 Mrpl24-201ENSMUST00000019854 1226 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
Usp47Q8BY87 Gm46124-202ENSMUST00000217260 860 ntTSL 5 BASIC11.09□□□□□ -0.63
Usp47Q8BY87 AC154785.1-201ENSMUST00000223280 572 ntBASIC11.09□□□□□ -0.63
Usp47Q8BY87 AL590616.1-201ENSMUST00000223339 574 ntBASIC11.09□□□□□ -0.63
Usp47Q8BY87 Ndufa7-201ENSMUST00000048249 508 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
Usp47Q8BY87 Dhcr7-207ENSMUST00000141916 2752 ntAPPRIS P2 TSL 5 BASIC11.09□□□□□ -0.63
Usp47Q8BY87 Elavl4-207ENSMUST00000106603 3761 ntTSL 1 (best) BASIC11.09□□□□□ -0.63
Usp47Q8BY87 Calb1-201ENSMUST00000029876 4222 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
Usp47Q8BY87 Polq-201ENSMUST00000054034 8552 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
Usp47Q8BY87 Mmp27-201ENSMUST00000120900 1662 ntAPPRIS P2 TSL 1 (best) BASIC11.09□□□□□ -0.63
Usp47Q8BY87 Rad54l-201ENSMUST00000102704 3025 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
Usp47Q8BY87 Cntnap4-202ENSMUST00000118171 4860 ntAPPRIS ALT1 TSL 5 BASIC11.09□□□□□ -0.63
Usp47Q8BY87 Gm45056-201ENSMUST00000208140 3462 ntTSL 5 BASIC11.09□□□□□ -0.63
Usp47Q8BY87 Olfr1246-202ENSMUST00000213221 5338 ntAPPRIS P1 TSL 5 BASIC11.09□□□□□ -0.63
Usp47Q8BY87 Olfr1246-203ENSMUST00000217192 5301 ntAPPRIS P1 TSL 5 BASIC11.09□□□□□ -0.63
Usp47Q8BY87 Mical2-201ENSMUST00000037991 3352 ntAPPRIS ALT2 TSL 1 (best) BASIC11.09□□□□□ -0.63
Usp47Q8BY87 Alms1-205ENSMUST00000213058 11163 ntAPPRIS ALT2 TSL 5 BASIC11.09□□□□□ -0.63
Usp47Q8BY87 Olfr455-202ENSMUST00000217978 4054 ntAPPRIS P1 TSL 5 BASIC11.09□□□□□ -0.63
Usp47Q8BY87 Nedd4l-204ENSMUST00000224347 3150 ntBASIC11.09□□□□□ -0.63
Usp47Q8BY87 Mbtps1-202ENSMUST00000098362 4336 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.63
Usp47Q8BY87 Prpf40a-208ENSMUST00000210789 3773 ntAPPRIS ALT2 TSL 5 BASIC11.08□□□□□ -0.64
Usp47Q8BY87 St7-206ENSMUST00000115417 2168 ntTSL 1 (best) BASIC11.08□□□□□ -0.64
Usp47Q8BY87 Gm19583-201ENSMUST00000202993 1366 ntTSL 1 (best) BASIC11.08□□□□□ -0.64
Usp47Q8BY87 Usp50-201ENSMUST00000028842 1361 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
Usp47Q8BY87 Ms4a13-201ENSMUST00000073380 1375 ntAPPRIS P3 TSL 1 (best) BASIC11.08□□□□□ -0.64
Usp47Q8BY87 Ighv1-84-201ENSMUST00000103551 351 ntAPPRIS P1 BASIC11.08□□□□□ -0.64
Usp47Q8BY87 Gm23484-201ENSMUST00000104178 131 ntBASIC11.08□□□□□ -0.64
Usp47Q8BY87 Gm22660-201ENSMUST00000104193 130 ntBASIC11.08□□□□□ -0.64
Usp47Q8BY87 Gm9493-201ENSMUST00000104916 579 ntAPPRIS P1 BASIC11.08□□□□□ -0.64
Usp47Q8BY87 Gm14509-201ENSMUST00000117312 1286 ntBASIC11.08□□□□□ -0.64
Usp47Q8BY87 Gm16015-201ENSMUST00000154897 390 ntTSL 1 (best) BASIC11.08□□□□□ -0.64
Usp47Q8BY87 Gm4835-201ENSMUST00000155839 972 ntBASIC11.08□□□□□ -0.64
Usp47Q8BY87 4833412C05Rik-201ENSMUST00000181235 1083 ntTSL 1 (best) BASIC11.08□□□□□ -0.64
Usp47Q8BY87 Mir7005-201ENSMUST00000185089 69 ntBASIC11.08□□□□□ -0.64
Usp47Q8BY87 1700028B04Rik-201ENSMUST00000186274 555 ntBASIC11.08□□□□□ -0.64
Usp47Q8BY87 Gm37469-201ENSMUST00000193728 890 ntBASIC11.08□□□□□ -0.64
Usp47Q8BY87 4933403L11Rik-201ENSMUST00000193857 1121 ntBASIC11.08□□□□□ -0.64
Usp47Q8BY87 Gm44252-201ENSMUST00000204187 330 ntBASIC11.08□□□□□ -0.64
Usp47Q8BY87 4930483O08Rik-201ENSMUST00000209850 1030 ntTSL 1 (best) BASIC11.08□□□□□ -0.64
Usp47Q8BY87 Akr1c21-201ENSMUST00000021628 1207 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
Usp47Q8BY87 Gm18972-201ENSMUST00000218873 630 ntBASIC11.08□□□□□ -0.64
Usp47Q8BY87 Gm40853-201ENSMUST00000221342 582 ntBASIC11.08□□□□□ -0.64
Usp47Q8BY87 4930477G07Rik-202ENSMUST00000223195 947 ntTSL 5 BASIC11.08□□□□□ -0.64
Usp47Q8BY87 Gm9255-201ENSMUST00000223225 581 ntBASIC11.08□□□□□ -0.64
Usp47Q8BY87 Zfp874a-208ENSMUST00000225479 1092 ntBASIC11.08□□□□□ -0.64
Usp47Q8BY87 Ifitm5-201ENSMUST00000026562 765 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
Usp47Q8BY87 Mgat4d-201ENSMUST00000038692 1293 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
Usp47Q8BY87 Olfr715-201ENSMUST00000076958 1131 ntAPPRIS P1 BASIC11.08□□□□□ -0.64
Usp47Q8BY87 Defa37-201ENSMUST00000084040 403 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
Usp47Q8BY87 Ccdc47-201ENSMUST00000002043 5193 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
Usp47Q8BY87 Pnp-203ENSMUST00000048615 2942 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
Usp47Q8BY87 Pard3bos1-202ENSMUST00000138535 1878 ntTSL 1 (best) BASIC11.08□□□□□ -0.64
Usp47Q8BY87 Cdh23-204ENSMUST00000105463 10991 ntAPPRIS ALT2 TSL 5 BASIC11.08□□□□□ -0.64
Usp47Q8BY87 Slc26a1-201ENSMUST00000051757 3812 ntAPPRIS P3 TSL 1 (best) BASIC11.08□□□□□ -0.64
Usp47Q8BY87 CT009515.4-201ENSMUST00000228165 1494 ntBASIC11.08□□□□□ -0.64
Usp47Q8BY87 Mroh2a-202ENSMUST00000113130 7491 ntAPPRIS P2 TSL 5 BASIC11.08□□□□□ -0.64
Usp47Q8BY87 RMST_1.1-209ENSMUST00000219444 2679 ntTSL 1 (best) BASIC11.08□□□□□ -0.64
Usp47Q8BY87 Wwp1-202ENSMUST00000108246 6440 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
Usp47Q8BY87 Cd300lb-203ENSMUST00000149663 2641 ntTSL 1 (best) BASIC11.08□□□□□ -0.64
Usp47Q8BY87 Fam198b-201ENSMUST00000029567 6627 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
Usp47Q8BY87 3830406C13Rik-201ENSMUST00000112669 2477 ntTSL 1 (best) BASIC11.07□□□□□ -0.64
Usp47Q8BY87 3830406C13Rik-202ENSMUST00000163392 2452 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
Usp47Q8BY87 Gm28972-201ENSMUST00000186990 2167 ntTSL 5 BASIC11.07□□□□□ -0.64
Usp47Q8BY87 Gm5761-201ENSMUST00000119238 834 ntBASIC11.07□□□□□ -0.64
Usp47Q8BY87 Gm14824-201ENSMUST00000119421 737 ntBASIC11.07□□□□□ -0.64
Usp47Q8BY87 Svs3a-201ENSMUST00000017147 1191 ntAPPRIS P3 TSL 1 (best) BASIC11.07□□□□□ -0.64
Usp47Q8BY87 Gm15013-202ENSMUST00000183728 801 ntAPPRIS P1 BASIC11.07□□□□□ -0.64
Usp47Q8BY87 Gm28869-201ENSMUST00000187199 811 ntTSL 3 BASIC11.07□□□□□ -0.64
Retrieved 100 of 76,532 protein–RNA pairs in 47.9 ms