Protein–RNA interactions for Protein: P18828

Sdc1, Syndecan-1, mousemouse

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sdc1P18828 Gm35106-201ENSMUST00000192731 250 ntBASIC6.33□□□□□ -1.4
Sdc1P18828 Gm43177-201ENSMUST00000197032 1107 ntTSL 1 (best) BASIC6.33□□□□□ -1.4
Sdc1P18828 Gm43287-201ENSMUST00000197747 600 ntBASIC6.33□□□□□ -1.4
Sdc1P18828 Gm5981-201ENSMUST00000199912 487 ntBASIC6.33□□□□□ -1.4
Sdc1P18828 Gm17909-201ENSMUST00000207587 907 ntBASIC6.33□□□□□ -1.4
Sdc1P18828 Gm10046-202ENSMUST00000208942 126 ntBASIC6.33□□□□□ -1.4
Sdc1P18828 Pvrig-201ENSMUST00000211088 1080 ntAPPRIS P1 TSL 5 BASIC6.33□□□□□ -1.4
Sdc1P18828 AC125543.2-201ENSMUST00000222114 105 ntBASIC6.33□□□□□ -1.4
Sdc1P18828 CT030170.7-201ENSMUST00000223372 103 ntBASIC6.33□□□□□ -1.4
Sdc1P18828 AC114585.2-203ENSMUST00000228400 339 ntBASIC6.33□□□□□ -1.4
Sdc1P18828 Rps14-201ENSMUST00000025511 683 ntAPPRIS P1 TSL 1 (best) BASIC6.33□□□□□ -1.4
Sdc1P18828 Psg17-201ENSMUST00000004655 2100 ntAPPRIS P1 TSL 1 (best) BASIC6.33□□□□□ -1.4
Sdc1P18828 Spink10-201ENSMUST00000055725 1113 ntAPPRIS P1 TSL 1 (best) BASIC6.33□□□□□ -1.4
Sdc1P18828 Cytl1-201ENSMUST00000073554 974 ntAPPRIS P1 TSL 1 (best) BASIC6.33□□□□□ -1.4
Sdc1P18828 Rnase1-201ENSMUST00000080126 992 ntAPPRIS P1 TSL 1 (best) BASIC6.33□□□□□ -1.4
Sdc1P18828 Pde1c-202ENSMUST00000114327 6821 ntTSL 1 (best) BASIC6.33□□□□□ -1.4
Sdc1P18828 Mphosph9-211ENSMUST00000184951 5008 ntAPPRIS ALT2 TSL 5 BASIC6.33□□□□□ -1.4
Sdc1P18828 Vmn2r105-201ENSMUST00000167382 2583 ntAPPRIS P1 TSL 5 BASIC6.33□□□□□ -1.4
Sdc1P18828 Nup93-202ENSMUST00000109547 2847 ntAPPRIS P1 TSL 5 BASIC6.33□□□□□ -1.4
Sdc1P18828 H60c-201ENSMUST00000170893 2817 ntAPPRIS P2 TSL 1 (best) BASIC6.33□□□□□ -1.4
Sdc1P18828 Tnik-215ENSMUST00000162777 3894 ntAPPRIS ALT2 TSL 5 BASIC6.33□□□□□ -1.4
Sdc1P18828 Galnt15-202ENSMUST00000164208 3563 ntTSL 1 (best) BASIC6.33□□□□□ -1.4
Sdc1P18828 Exoc4-201ENSMUST00000052266 4824 ntAPPRIS P1 TSL 1 (best) BASIC6.33□□□□□ -1.4
Sdc1P18828 Itih5-201ENSMUST00000026886 7900 ntAPPRIS P1 TSL 1 (best) BASIC6.33□□□□□ -1.4
Sdc1P18828 Gm31410-201ENSMUST00000217302 4048 ntTSL 1 (best) BASIC6.33□□□□□ -1.4
Sdc1P18828 Bpifc-201ENSMUST00000061699 2714 ntAPPRIS P1 TSL 1 (best) BASIC6.33□□□□□ -1.4
Sdc1P18828 Gm6348-201ENSMUST00000200751 1443 ntBASIC6.33□□□□□ -1.4
Sdc1P18828 Gm6346-201ENSMUST00000201146 1443 ntBASIC6.33□□□□□ -1.4
Sdc1P18828 AC093022.3-201ENSMUST00000226569 1926 ntBASIC6.33□□□□□ -1.4
Sdc1P18828 Zfp729a-201ENSMUST00000012314 9455 ntAPPRIS P1 TSL 1 (best) BASIC6.32□□□□□ -1.4
Sdc1P18828 Kcnip4-206ENSMUST00000175660 2394 ntAPPRIS ALT1 TSL 1 (best) BASIC6.32□□□□□ -1.4
Sdc1P18828 Lipk-201ENSMUST00000054260 2125 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
Sdc1P18828 Gpbp1l1-201ENSMUST00000030460 3588 ntAPPRIS P1 TSL 1 (best) BASIC6.32□□□□□ -1.4
Sdc1P18828 Olfr1508-202ENSMUST00000206520 5791 ntAPPRIS P1 TSL 2 BASIC6.32□□□□□ -1.4
Sdc1P18828 CT009757.6-201ENSMUST00000220661 2312 ntBASIC6.32□□□□□ -1.4
Sdc1P18828 Kcne4-202ENSMUST00000187432 1813 ntTSL 5 BASIC6.32□□□□□ -1.4
Sdc1P18828 Sec24c-202ENSMUST00000223751 4196 ntBASIC6.32□□□□□ -1.4
Sdc1P18828 AC118639.1-203ENSMUST00000228425 2016 ntBASIC6.32□□□□□ -1.4
Sdc1P18828 Gm8428-201ENSMUST00000159919 1784 ntBASIC6.32□□□□□ -1.4
Sdc1P18828 Milr1-202ENSMUST00000106794 1514 ntAPPRIS ALT2 TSL 1 (best) BASIC6.32□□□□□ -1.4
Sdc1P18828 Glrp1-201ENSMUST00000067625 1957 ntAPPRIS P1 TSL 1 (best) BASIC6.32□□□□□ -1.4
Sdc1P18828 Gm14188-201ENSMUST00000105060 168 ntBASIC6.32□□□□□ -1.4
Sdc1P18828 Gm11340-201ENSMUST00000119226 412 ntBASIC6.32□□□□□ -1.4
Sdc1P18828 Gm13438-201ENSMUST00000120100 573 ntBASIC6.32□□□□□ -1.4
Sdc1P18828 Gm13776-201ENSMUST00000122236 1261 ntBASIC6.32□□□□□ -1.4
Sdc1P18828 AV099323-201ENSMUST00000124336 921 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
Sdc1P18828 1700092C02Rik-201ENSMUST00000134397 359 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
Sdc1P18828 Sox5os3-201ENSMUST00000139351 906 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
Sdc1P18828 Platr14-205ENSMUST00000146553 770 ntTSL 2 BASIC6.32□□□□□ -1.4
Sdc1P18828 1700018A04Rik-203ENSMUST00000150418 706 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
Sdc1P18828 Gm22881-201ENSMUST00000157747 134 ntBASIC6.32□□□□□ -1.4
Sdc1P18828 Snca-202ENSMUST00000163779 1188 ntAPPRIS P1 TSL 1 (best) BASIC6.32□□□□□ -1.4
Sdc1P18828 Gm26623-201ENSMUST00000180911 850 ntTSL 5 BASIC6.32□□□□□ -1.4
Sdc1P18828 Mocs2-210ENSMUST00000183407 1074 ntTSL 5 BASIC6.32□□□□□ -1.4
Sdc1P18828 1700095A13Rik-201ENSMUST00000185460 711 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
Sdc1P18828 Ly6a-204ENSMUST00000187994 955 ntAPPRIS P1 TSL 1 (best) BASIC6.32□□□□□ -1.4
Sdc1P18828 Ighv5-12-4-201ENSMUST00000195381 353 ntAPPRIS P1 BASIC6.32□□□□□ -1.4
Sdc1P18828 Gm37486-201ENSMUST00000195663 405 ntBASIC6.32□□□□□ -1.4
Sdc1P18828 Gm42464-201ENSMUST00000196717 417 ntBASIC6.32□□□□□ -1.4
Sdc1P18828 Gm45135-201ENSMUST00000206787 1184 ntBASIC6.32□□□□□ -1.4
Sdc1P18828 Gm36849-201ENSMUST00000210345 680 ntTSL 2 BASIC6.32□□□□□ -1.4
Sdc1P18828 Gm40638-201ENSMUST00000216422 682 ntTSL 5 BASIC6.32□□□□□ -1.4
Sdc1P18828 4930584E12Rik-201ENSMUST00000216646 981 ntBASIC6.32□□□□□ -1.4
Sdc1P18828 Olfr371-202ENSMUST00000218663 1162 ntAPPRIS P1 TSL 5 BASIC6.32□□□□□ -1.4
Sdc1P18828 Nkain2-205ENSMUST00000219125 1166 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
Sdc1P18828 AC116589.8-201ENSMUST00000220945 364 ntTSL 2 BASIC6.32□□□□□ -1.4
Sdc1P18828 Gm7986-201ENSMUST00000221336 551 ntBASIC6.32□□□□□ -1.4
Sdc1P18828 Gm28653-202ENSMUST00000227082 521 ntBASIC6.32□□□□□ -1.4
Sdc1P18828 Gm10024-201ENSMUST00000075421 553 ntAPPRIS P1 BASIC6.32□□□□□ -1.4
Sdc1P18828 Mir181c-201ENSMUST00000083549 89 ntBASIC6.32□□□□□ -1.4
Sdc1P18828 Gm21036-201ENSMUST00000207544 2611 ntBASIC6.32□□□□□ -1.4
Sdc1P18828 Gm36388-201ENSMUST00000191663 1675 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
Sdc1P18828 BC028471-203ENSMUST00000202022 4113 ntTSL 2 BASIC6.32□□□□□ -1.4
Sdc1P18828 Gm37896-201ENSMUST00000195611 2791 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
Sdc1P18828 Akap9-201ENSMUST00000044492 13123 ntAPPRIS P1 TSL 1 (best) BASIC6.32□□□□□ -1.4
Sdc1P18828 Prkacb-203ENSMUST00000106137 4061 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
Sdc1P18828 Phf3-205ENSMUST00000186733 7567 ntAPPRIS P1 TSL 5 BASIC6.32□□□□□ -1.4
Sdc1P18828 Vmn1r70-204ENSMUST00000228090 3185 ntAPPRIS ALT2 BASIC6.32□□□□□ -1.4
Sdc1P18828 Csrnp3-201ENSMUST00000053910 4495 ntAPPRIS P3 TSL 1 (best) BASIC6.32□□□□□ -1.4
Sdc1P18828 Abi1-212ENSMUST00000153931 2729 ntAPPRIS ALT1 TSL 5 BASIC6.32□□□□□ -1.4
Sdc1P18828 Adamts12-201ENSMUST00000061318 8579 ntAPPRIS P1 TSL 1 (best) BASIC6.32□□□□□ -1.4
Sdc1P18828 Trdmt1-202ENSMUST00000124488 3788 ntAPPRIS P1 TSL 1 (best) BASIC6.32□□□□□ -1.4
Sdc1P18828 Dab2-201ENSMUST00000078019 3793 ntAPPRIS ALT2 TSL 1 (best) BASIC6.32□□□□□ -1.4
Sdc1P18828 Gm42514-201ENSMUST00000196636 1832 ntBASIC6.32□□□□□ -1.4
Sdc1P18828 Gm30382-202ENSMUST00000199007 1801 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
Sdc1P18828 Gcsam-201ENSMUST00000023339 3315 ntAPPRIS P3 TSL 1 (best) BASIC6.32□□□□□ -1.4
Sdc1P18828 Slc17a1-201ENSMUST00000006785 2026 ntAPPRIS P1 TSL 1 (best) BASIC6.32□□□□□ -1.4
Sdc1P18828 Trappc8-206ENSMUST00000225661 5191 ntAPPRIS ALT2 BASIC6.31□□□□□ -1.4
Sdc1P18828 Scaper-201ENSMUST00000037408 5158 ntAPPRIS P2 TSL 5 BASIC6.31□□□□□ -1.4
Sdc1P18828 Mapk8-205ENSMUST00000111945 5756 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
Sdc1P18828 Dennd1b-201ENSMUST00000094505 8073 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
Sdc1P18828 Zscan4b-202ENSMUST00000210847 1779 ntAPPRIS P1 TSL 5 BASIC6.31□□□□□ -1.4
Sdc1P18828 Gm17354-201ENSMUST00000170933 3039 ntTSL 5 BASIC6.31□□□□□ -1.4
Sdc1P18828 C630043F03Rik-201ENSMUST00000122923 2581 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
Sdc1P18828 Elk3-204ENSMUST00000151153 1336 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
Sdc1P18828 Asic5-202ENSMUST00000107736 1706 ntAPPRIS ALT2 TSL 1 (best) BASIC6.31□□□□□ -1.4
Sdc1P18828 Gm1698-201ENSMUST00000136749 2313 ntTSL 2 BASIC6.31□□□□□ -1.4
Sdc1P18828 Trmt2b-203ENSMUST00000113252 3128 ntAPPRIS P1 TSL 1 (best) BASIC6.31□□□□□ -1.4
Sdc1P18828 Pde10a-206ENSMUST00000115720 3328 ntAPPRIS ALT2 TSL 1 (best) BASIC6.31□□□□□ -1.4
Sdc1P18828 Gm44185-201ENSMUST00000204539 3307 ntBASIC6.31□□□□□ -1.4
Retrieved 100 of 76,532 protein–RNA pairs in 47.7 ms