Protein–RNA interactions for Protein: P11087

Col1a1, Collagen alpha-1(I) chain, mousemouse

Predictions only

Length 1,453 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col1a1P11087 Gm15481-201ENSMUST00000120264 539 ntBASIC9.21□□□□□ -0.94
Col1a1P11087 Gm14401-204ENSMUST00000134614 973 ntAPPRIS P1 TSL 2 BASIC9.21□□□□□ -0.94
Col1a1P11087 Gm14040-201ENSMUST00000139058 697 ntTSL 1 (best) BASIC9.21□□□□□ -0.94
Col1a1P11087 Gm25660-201ENSMUST00000158470 104 ntBASIC9.21□□□□□ -0.94
Col1a1P11087 Gm7244-201ENSMUST00000164658 455 ntBASIC9.21□□□□□ -0.94
Col1a1P11087 Sh3bgr-207ENSMUST00000171181 678 ntAPPRIS P1 TSL 1 (best) BASIC9.21□□□□□ -0.94
Col1a1P11087 Snhg5-201ENSMUST00000180563 1004 ntTSL 1 (best) BASIC9.21□□□□□ -0.94
Col1a1P11087 Gm36961-201ENSMUST00000191980 132 ntBASIC9.21□□□□□ -0.94
Col1a1P11087 Cnn3-203ENSMUST00000197135 1242 ntTSL 5 BASIC9.21□□□□□ -0.94
Col1a1P11087 Gm43023-201ENSMUST00000197583 2106 ntBASIC9.21□□□□□ -0.94
Col1a1P11087 Gm42907-201ENSMUST00000199793 2148 ntBASIC9.21□□□□□ -0.94
Col1a1P11087 Gm8479-201ENSMUST00000203825 718 ntBASIC9.21□□□□□ -0.94
Col1a1P11087 Gm3428-204ENSMUST00000214488 1020 ntTSL 5 BASIC9.21□□□□□ -0.94
Col1a1P11087 Gm36827-201ENSMUST00000220080 1249 ntTSL 5 BASIC9.21□□□□□ -0.94
Col1a1P11087 Slc6a5-203ENSMUST00000207753 6966 ntAPPRIS P1 TSL 1 (best) BASIC9.21□□□□□ -0.94
Col1a1P11087 8430437L04Rik-201ENSMUST00000124829 1663 ntTSL 1 (best) BASIC9.21□□□□□ -0.94
Col1a1P11087 AI182371-206ENSMUST00000226631 1680 ntAPPRIS ALT2 BASIC9.21□□□□□ -0.94
Col1a1P11087 Sos2-203ENSMUST00000182396 3963 ntTSL 5 BASIC9.21□□□□□ -0.94
Col1a1P11087 Top3a-202ENSMUST00000102668 3542 ntAPPRIS ALT2 TSL 1 (best) BASIC9.2□□□□□ -0.94
Col1a1P11087 Pcdh9-201ENSMUST00000068992 3714 ntAPPRIS P3 TSL 1 (best) BASIC9.2□□□□□ -0.94
Col1a1P11087 Cntrl-206ENSMUST00000113037 5970 ntTSL 5 BASIC9.2□□□□□ -0.94
Col1a1P11087 9230106D20Rik-201ENSMUST00000052806 1406 ntTSL 5 BASIC9.2□□□□□ -0.94
Col1a1P11087 Abcc3-206ENSMUST00000178136 5005 ntAPPRIS ALT2 TSL 1 (best) BASIC9.2□□□□□ -0.94
Col1a1P11087 Plcd4-202ENSMUST00000067916 4552 ntAPPRIS ALT2 TSL 5 BASIC9.2□□□□□ -0.94
Col1a1P11087 Flrt3-202ENSMUST00000110057 3977 ntAPPRIS P1 TSL 1 (best) BASIC9.2□□□□□ -0.94
Col1a1P11087 Nox1-201ENSMUST00000033610 2563 ntAPPRIS P1 TSL 1 (best) BASIC9.2□□□□□ -0.94
Col1a1P11087 Gm6614-201ENSMUST00000111832 1953 ntAPPRIS P2 TSL 5 BASIC9.2□□□□□ -0.94
Col1a1P11087 Serping1-201ENSMUST00000023994 1768 ntAPPRIS P1 TSL 1 (best) BASIC9.2□□□□□ -0.94
Col1a1P11087 Dido1-206ENSMUST00000103057 4906 ntAPPRIS ALT2 TSL 1 (best) BASIC9.2□□□□□ -0.94
Col1a1P11087 Trpm2-203ENSMUST00000105401 7274 ntAPPRIS P1 TSL 1 (best) BASIC9.2□□□□□ -0.94
Col1a1P11087 Plec-217ENSMUST00000169438 14827 ntTSL 1 (best) BASIC9.2□□□□□ -0.94
Col1a1P11087 Gm45515-201ENSMUST00000210796 2141 ntTSL 1 (best) BASIC9.2□□□□□ -0.94
Col1a1P11087 Slc25a13-201ENSMUST00000015256 3067 ntAPPRIS P1 TSL 1 (best) BASIC9.2□□□□□ -0.94
Col1a1P11087 Osbpl1a-202ENSMUST00000117361 2687 ntTSL 1 (best) BASIC9.2□□□□□ -0.94
Col1a1P11087 Gm31520-202ENSMUST00000203574 1524 ntTSL 1 (best) BASIC9.2□□□□□ -0.94
Col1a1P11087 Dync1i2-204ENSMUST00000112138 2466 ntAPPRIS P3 TSL 1 (best) BASIC9.2□□□□□ -0.94
Col1a1P11087 Cabyr-204ENSMUST00000121018 1305 ntAPPRIS ALT2 TSL 1 (best) BASIC9.2□□□□□ -0.94
Col1a1P11087 Olfr1410-202ENSMUST00000216553 5433 ntAPPRIS P1 TSL 5 BASIC9.2□□□□□ -0.94
Col1a1P11087 Adamtsl1-209ENSMUST00000141889 7805 ntAPPRIS ALT2 TSL 5 BASIC9.2□□□□□ -0.94
Col1a1P11087 C130083A15Rik-201ENSMUST00000205707 1460 ntBASIC9.2□□□□□ -0.94
Col1a1P11087 Gm10069-201ENSMUST00000144745 3694 ntTSL 1 (best) BASIC9.2□□□□□ -0.94
Col1a1P11087 Igkv9-123-201ENSMUST00000103313 377 ntAPPRIS P1 BASIC9.2□□□□□ -0.94
Col1a1P11087 Gm14279-201ENSMUST00000117142 332 ntBASIC9.2□□□□□ -0.94
Col1a1P11087 Rpl35a-ps2-201ENSMUST00000117444 333 ntBASIC9.2□□□□□ -0.94
Col1a1P11087 Gm10243-201ENSMUST00000117571 333 ntBASIC9.2□□□□□ -0.94
Col1a1P11087 Gm15105-201ENSMUST00000117777 204 ntBASIC9.2□□□□□ -0.94
Col1a1P11087 Rpl35a-ps4-201ENSMUST00000121779 333 ntBASIC9.2□□□□□ -0.94
Col1a1P11087 Gm14728-201ENSMUST00000122196 492 ntBASIC9.2□□□□□ -0.94
Col1a1P11087 Speer3-201ENSMUST00000124677 1192 ntAPPRIS P1 TSL 1 (best) BASIC9.2□□□□□ -0.94
Col1a1P11087 Ccdc142os-201ENSMUST00000125657 891 ntTSL 1 (best) BASIC9.2□□□□□ -0.94
Col1a1P11087 4933431E20Rik-206ENSMUST00000138472 483 ntTSL 5 BASIC9.2□□□□□ -0.94
Col1a1P11087 Rpl35a-ps3-201ENSMUST00000147311 333 ntBASIC9.2□□□□□ -0.94
Col1a1P11087 Rpl35a-ps6-201ENSMUST00000148282 333 ntBASIC9.2□□□□□ -0.94
Col1a1P11087 Gm10552-202ENSMUST00000161763 717 ntTSL 5 BASIC9.2□□□□□ -0.94
Col1a1P11087 Gm42421-201ENSMUST00000172367 719 ntAPPRIS P1 TSL 3 BASIC9.2□□□□□ -0.94
Col1a1P11087 4930532G15Rik-201ENSMUST00000180632 699 ntTSL 1 (best) BASIC9.2□□□□□ -0.94
Col1a1P11087 Gm7481-201ENSMUST00000182020 995 ntBASIC9.2□□□□□ -0.94
Col1a1P11087 Gm42775-201ENSMUST00000198407 740 ntTSL 3 BASIC9.2□□□□□ -0.94
Col1a1P11087 1700028E10Rik-206ENSMUST00000202216 557 ntTSL 3 BASIC9.2□□□□□ -0.94
Col1a1P11087 Gm44196-202ENSMUST00000204186 812 ntTSL 3 BASIC9.2□□□□□ -0.94
Col1a1P11087 Gm44836-201ENSMUST00000205869 336 ntTSL 5 BASIC9.2□□□□□ -0.94
Col1a1P11087 AC122372.1-201ENSMUST00000215344 280 ntBASIC9.2□□□□□ -0.94
Col1a1P11087 Mup14-202ENSMUST00000075206 925 ntAPPRIS P1 TSL 1 (best) BASIC9.2□□□□□ -0.94
Col1a1P11087 Gm10247-201ENSMUST00000090395 333 ntBASIC9.2□□□□□ -0.94
Col1a1P11087 Rpl21-ps5-201ENSMUST00000095940 483 ntBASIC9.2□□□□□ -0.94
Col1a1P11087 Aldh1l1-203ENSMUST00000130418 4175 ntAPPRIS P1 TSL 1 (best) BASIC9.2□□□□□ -0.94
Col1a1P11087 Pogz-204ENSMUST00000107269 5966 ntAPPRIS ALT2 TSL 5 BASIC9.2□□□□□ -0.94
Col1a1P11087 Cd101-202ENSMUST00000167086 3223 ntAPPRIS ALT2 TSL 5 BASIC9.2□□□□□ -0.94
Col1a1P11087 Dclk1-212ENSMUST00000199585 5196 ntTSL 1 (best) BASIC9.2□□□□□ -0.94
Col1a1P11087 Mapk6-202ENSMUST00000168937 4089 ntAPPRIS P1 TSL 5 BASIC9.2□□□□□ -0.94
Col1a1P11087 Elp3-203ENSMUST00000225355 2771 ntAPPRIS P1 BASIC9.19□□□□□ -0.94
Col1a1P11087 Gapt-201ENSMUST00000058806 2069 ntAPPRIS P1 TSL 1 (best) BASIC9.19□□□□□ -0.94
Col1a1P11087 Il1rap-203ENSMUST00000166294 3200 ntTSL 1 (best) BASIC9.19□□□□□ -0.94
Col1a1P11087 Acer2-201ENSMUST00000045224 4216 ntAPPRIS P1 TSL 1 (best) BASIC9.19□□□□□ -0.94
Col1a1P11087 Gm28497-201ENSMUST00000189646 3029 ntBASIC9.19□□□□□ -0.94
Col1a1P11087 AC164437.4-204ENSMUST00000227169 4024 ntBASIC9.19□□□□□ -0.94
Col1a1P11087 Ugt2a3-201ENSMUST00000031195 2117 ntAPPRIS P1 TSL 1 (best) BASIC9.19□□□□□ -0.94
Col1a1P11087 Hfe-202ENSMUST00000091706 3572 ntAPPRIS P1 TSL 1 (best) BASIC9.19□□□□□ -0.94
Col1a1P11087 2600014E21Rik-201ENSMUST00000186411 4805 ntTSL 5 BASIC9.19□□□□□ -0.94
Col1a1P11087 Stmn2-201ENSMUST00000029002 2073 ntAPPRIS P1 TSL 1 (best) BASIC9.19□□□□□ -0.94
Col1a1P11087 Sulf1-203ENSMUST00000180062 4636 ntAPPRIS P1 TSL 1 (best) BASIC9.19□□□□□ -0.94
Col1a1P11087 Fancl-202ENSMUST00000109509 1187 ntTSL 1 (best) BASIC9.19□□□□□ -0.94
Col1a1P11087 Gm9311-201ENSMUST00000118042 1269 ntBASIC9.19□□□□□ -0.94
Col1a1P11087 Gm26321-201ENSMUST00000157740 242 ntBASIC9.19□□□□□ -0.94
Col1a1P11087 Gml-202ENSMUST00000164026 895 ntAPPRIS P1 TSL 2 BASIC9.19□□□□□ -0.94
Col1a1P11087 Gm43396-201ENSMUST00000197506 706 ntBASIC9.19□□□□□ -0.94
Col1a1P11087 4633401B06Rik-201ENSMUST00000198169 1073 ntBASIC9.19□□□□□ -0.94
Col1a1P11087 4930425L21Rik-201ENSMUST00000203439 899 ntTSL 1 (best) BASIC9.19□□□□□ -0.94
Col1a1P11087 Gm45045-201ENSMUST00000207368 218 ntTSL 5 BASIC9.19□□□□□ -0.94
Col1a1P11087 Gm32052-201ENSMUST00000212073 799 ntTSL 5 BASIC9.19□□□□□ -0.94
Col1a1P11087 Gm35998-201ENSMUST00000212862 838 ntTSL 5 BASIC9.19□□□□□ -0.94
Col1a1P11087 AC160114.2-201ENSMUST00000223021 300 ntBASIC9.19□□□□□ -0.94
Col1a1P11087 Cfap126-201ENSMUST00000027959 1034 ntAPPRIS P2 TSL 1 (best) BASIC9.19□□□□□ -0.94
Col1a1P11087 Rps27rt-201ENSMUST00000053150 374 ntAPPRIS P1 BASIC9.19□□□□□ -0.94
Col1a1P11087 Atp5l-ps1-201ENSMUST00000097132 312 ntBASIC9.19□□□□□ -0.94
Col1a1P11087 Ndst3-206ENSMUST00000154668 5570 ntAPPRIS P1 TSL 5 BASIC9.19□□□□□ -0.94
Col1a1P11087 Ctnnd1-209ENSMUST00000111678 5870 ntTSL 5 BASIC9.19□□□□□ -0.94
Col1a1P11087 Gm44835-201ENSMUST00000205544 3181 ntBASIC9.19□□□□□ -0.94
Col1a1P11087 Spp1-201ENSMUST00000031243 1410 ntAPPRIS P3 TSL 1 (best) BASIC9.19□□□□□ -0.94
Col1a1P11087 Runx1t1-202ENSMUST00000098256 3317 ntAPPRIS P3 TSL 1 (best) BASIC9.19□□□□□ -0.94
Retrieved 100 of 76,532 protein–RNA pairs in 49.5 ms