Protein–RNA interactions for Protein: P53564

Cux1, Homeobox protein cut-like 1, mousemouse

Predictions only

Length 1,515 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cux1P53564 Npvf-201ENSMUST00000031853 812 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Cux1P53564 Aoah-201ENSMUST00000021757 2921 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Cux1P53564 Ndrg3-203ENSMUST00000109558 4023 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
Cux1P53564 Dusp16-201ENSMUST00000100857 5104 ntAPPRIS P3 TSL 1 (best) BASIC12.06□□□□□ -0.48
Cux1P53564 Gm10600-201ENSMUST00000117202 2047 ntAPPRIS P1 BASIC12.05□□□□□ -0.48
Cux1P53564 AC093043.2-201ENSMUST00000228616 2017 ntBASIC12.05□□□□□ -0.48
Cux1P53564 Gm10286-201ENSMUST00000093603 5077 ntBASIC12.05□□□□□ -0.48
Cux1P53564 Frmpd1-201ENSMUST00000044773 4812 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Cux1P53564 Gm8428-201ENSMUST00000159919 1784 ntBASIC12.05□□□□□ -0.48
Cux1P53564 1700080N15Rik-202ENSMUST00000154360 1316 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
Cux1P53564 Ttc17-204ENSMUST00000111238 4590 ntTSL 5 BASIC12.05□□□□□ -0.48
Cux1P53564 9430034N14Rik-201ENSMUST00000193532 3785 ntBASIC12.05□□□□□ -0.48
Cux1P53564 Sez6-201ENSMUST00000000646 3964 ntAPPRIS ALT2 TSL 1 (best) BASIC12.05□□□□□ -0.48
Cux1P53564 Kbtbd4-201ENSMUST00000090682 2437 ntAPPRIS P3 TSL 1 (best) BASIC12.05□□□□□ -0.48
Cux1P53564 Plxna4os3-202ENSMUST00000143328 277 ntTSL 3 BASIC12.05□□□□□ -0.48
Cux1P53564 Obox4-ps31-201ENSMUST00000177210 1137 ntBASIC12.05□□□□□ -0.48
Cux1P53564 Gm9999-202ENSMUST00000185832 335 ntAPPRIS ALT2 TSL 1 (best) BASIC12.05□□□□□ -0.48
Cux1P53564 2010103J01Rik-201ENSMUST00000192375 388 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
Cux1P53564 Gm38204-201ENSMUST00000194835 619 ntTSL 2 BASIC12.05□□□□□ -0.48
Cux1P53564 Gm42883-201ENSMUST00000202594 222 ntBASIC12.05□□□□□ -0.48
Cux1P53564 Gm43928-201ENSMUST00000203737 409 ntBASIC12.05□□□□□ -0.48
Cux1P53564 Gm44508-201ENSMUST00000206943 1157 ntBASIC12.05□□□□□ -0.48
Cux1P53564 Gm5086-203ENSMUST00000210897 1136 ntTSL 5 BASIC12.05□□□□□ -0.48
Cux1P53564 Mrpl42-202ENSMUST00000217777 455 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
Cux1P53564 AC154595.1-201ENSMUST00000225533 1059 ntBASIC12.05□□□□□ -0.48
Cux1P53564 AC131033.1-201ENSMUST00000228223 279 ntBASIC12.05□□□□□ -0.48
Cux1P53564 Cfap126-201ENSMUST00000027959 1034 ntAPPRIS P2 TSL 1 (best) BASIC12.05□□□□□ -0.48
Cux1P53564 Pik3c2g-212ENSMUST00000190962 1774 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
Cux1P53564 Trim21-202ENSMUST00000106913 2682 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Cux1P53564 Ocln-202ENSMUST00000069756 4052 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Cux1P53564 Tnfsf15-201ENSMUST00000062246 3347 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Cux1P53564 Ccdc71-202ENSMUST00000193170 3044 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Cux1P53564 Slc12a8-205ENSMUST00000122314 2819 ntTSL 5 BASIC12.04□□□□□ -0.48
Cux1P53564 Nsun7-201ENSMUST00000031109 2345 ntAPPRIS ALT2 TSL 5 BASIC12.04□□□□□ -0.48
Cux1P53564 4930543E12Rik-202ENSMUST00000210408 1429 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
Cux1P53564 Nmnat2-201ENSMUST00000043313 4626 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Cux1P53564 Pdzd9-201ENSMUST00000033178 2180 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Cux1P53564 Dio2-201ENSMUST00000082432 5815 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Cux1P53564 Tnik-201ENSMUST00000159236 12276 ntAPPRIS ALT2 TSL 1 (best) BASIC12.04□□□□□ -0.48
Cux1P53564 Apobec4-201ENSMUST00000068875 1566 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Cux1P53564 Tcp10a-201ENSMUST00000095726 2442 ntAPPRIS P2 TSL 1 (best) BASIC12.04□□□□□ -0.48
Cux1P53564 Rbm27-201ENSMUST00000046972 6134 ntAPPRIS ALT2 TSL 5 BASIC12.04□□□□□ -0.48
Cux1P53564 2010310C07Rik-201ENSMUST00000187172 2226 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
Cux1P53564 Gm37460-201ENSMUST00000191796 2249 ntBASIC12.04□□□□□ -0.48
Cux1P53564 Ddx46-203ENSMUST00000223736 5612 ntAPPRIS P2 BASIC12.04□□□□□ -0.48
Cux1P53564 Gip-201ENSMUST00000103156 607 ntAPPRIS P1 TSL 5 BASIC12.04□□□□□ -0.48
Cux1P53564 n-R5s172-201ENSMUST00000104508 114 ntBASIC12.04□□□□□ -0.48
Cux1P53564 Dmrtc1a-203ENSMUST00000120808 1061 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
Cux1P53564 Cav1-209ENSMUST00000150901 380 ntTSL 2 BASIC12.04□□□□□ -0.48
Cux1P53564 Mir7212-201ENSMUST00000184098 61 ntBASIC12.04□□□□□ -0.48
Cux1P53564 Gm29383-201ENSMUST00000188284 480 ntBASIC12.04□□□□□ -0.48
Cux1P53564 CT009733.1-202ENSMUST00000224941 441 ntBASIC12.04□□□□□ -0.48
Cux1P53564 AC157572.1-201ENSMUST00000227187 825 ntBASIC12.04□□□□□ -0.48
Cux1P53564 Wdr48-201ENSMUST00000036561 3845 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Cux1P53564 BC048671-201ENSMUST00000054799 1212 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Cux1P53564 Gm25926-201ENSMUST00000082899 160 ntBASIC12.04□□□□□ -0.48
Cux1P53564 Gm42811-201ENSMUST00000201951 2768 ntBASIC12.04□□□□□ -0.48
Cux1P53564 Eftud2-201ENSMUST00000021306 3324 ntAPPRIS P1 TSL 5 BASIC12.04□□□□□ -0.48
Cux1P53564 Gm43948-201ENSMUST00000203474 2376 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
Cux1P53564 Rreb1-207ENSMUST00000128570 8436 ntAPPRIS P1 TSL 5 BASIC12.04□□□□□ -0.48
Cux1P53564 Arpp19-205ENSMUST00000168166 3944 ntAPPRIS P1 TSL 2 BASIC12.04□□□□□ -0.48
Cux1P53564 CT030170.4-203ENSMUST00000221062 1403 ntTSL 5 BASIC12.04□□□□□ -0.48
Cux1P53564 Gm45062-201ENSMUST00000162564 5842 ntAPPRIS P1 TSL 2 BASIC12.04□□□□□ -0.48
Cux1P53564 Gm11758-202ENSMUST00000107327 1325 ntAPPRIS P2 TSL 1 (best) BASIC12.04□□□□□ -0.48
Cux1P53564 Olfr1350-203ENSMUST00000219278 1768 ntAPPRIS P1 TSL 5 BASIC12.04□□□□□ -0.48
Cux1P53564 AC125020.1-201ENSMUST00000220137 2225 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
Cux1P53564 Stk11ip-201ENSMUST00000027414 4458 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Cux1P53564 Gm26545-201ENSMUST00000181082 1746 ntTSL 5 BASIC12.03□□□□□ -0.48
Cux1P53564 Cep112-216ENSMUST00000182729 2850 ntTSL 5 BASIC12.03□□□□□ -0.48
Cux1P53564 Gm4919-201ENSMUST00000117825 604 ntBASIC12.03□□□□□ -0.48
Cux1P53564 Gm15047-201ENSMUST00000118891 454 ntBASIC12.03□□□□□ -0.48
Cux1P53564 1700011I03Rik-204ENSMUST00000135806 831 ntAPPRIS ALT2 TSL 1 (best) BASIC12.03□□□□□ -0.48
Cux1P53564 Gm15527-201ENSMUST00000138259 858 ntTSL 3 BASIC12.03□□□□□ -0.48
Cux1P53564 Gm12236-201ENSMUST00000152968 250 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
Cux1P53564 Gpatch2-206ENSMUST00000160471 3841 ntAPPRIS ALT2 TSL 1 (best) BASIC12.03□□□□□ -0.48
Cux1P53564 4930550C14Rik-204ENSMUST00000217318 1055 ntAPPRIS ALT2 TSL 1 (best) BASIC12.03□□□□□ -0.48
Cux1P53564 Gm36827-201ENSMUST00000220080 1249 ntTSL 5 BASIC12.03□□□□□ -0.48
Cux1P53564 AC160060.2-201ENSMUST00000220151 811 ntTSL 5 BASIC12.03□□□□□ -0.48
Cux1P53564 Gng2-201ENSMUST00000055100 572 ntAPPRIS P1 TSL 3 BASIC12.03□□□□□ -0.48
Cux1P53564 Olfr1262-201ENSMUST00000061701 1024 ntAPPRIS P1 BASIC12.03□□□□□ -0.48
Cux1P53564 1700011I03Rik-201ENSMUST00000079738 1013 ntAPPRIS P3 TSL 1 (best) BASIC12.03□□□□□ -0.48
Cux1P53564 Slc11a2-205ENSMUST00000138843 4415 ntAPPRIS ALT1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Cux1P53564 Olfr43-204ENSMUST00000215550 1854 ntAPPRIS P1 TSL 3 BASIC12.03□□□□□ -0.48
Cux1P53564 Cd44-205ENSMUST00000111191 1533 ntAPPRIS ALT2 TSL 1 (best) BASIC12.03□□□□□ -0.48
Cux1P53564 Dhx30-204ENSMUST00000196171 3885 ntTSL 5 BASIC12.03□□□□□ -0.48
Cux1P53564 Gm3203-201ENSMUST00000197670 2389 ntBASIC12.03□□□□□ -0.48
Cux1P53564 Scrn3-201ENSMUST00000090811 3309 ntAPPRIS P2 TSL 1 (best) BASIC12.03□□□□□ -0.48
Cux1P53564 Kcnip4-204ENSMUST00000166924 2257 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
Cux1P53564 Gm28819-202ENSMUST00000187416 1335 ntTSL 5 BASIC12.03□□□□□ -0.48
Cux1P53564 Fasn-205ENSMUST00000206589 8333 ntAPPRIS ALT2 TSL 5 BASIC12.03□□□□□ -0.48
Cux1P53564 Usp3-202ENSMUST00000098613 2797 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
Cux1P53564 Ift122-202ENSMUST00000112923 3765 ntAPPRIS ALT2 TSL 5 BASIC12.03□□□□□ -0.48
Cux1P53564 Dusp27-202ENSMUST00000192369 4045 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Cux1P53564 Gng7-204ENSMUST00000118233 3433 ntAPPRIS ALT1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Cux1P53564 Gm7534-201ENSMUST00000097849 2338 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Cux1P53564 Cacng5-202ENSMUST00000106742 3678 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Cux1P53564 Gbp8-201ENSMUST00000031235 2459 ntAPPRIS P1 TSL 5 BASIC12.03□□□□□ -0.48
Cux1P53564 Gpbp1-202ENSMUST00000091236 3299 ntAPPRIS ALT2 TSL 1 (best) BASIC12.02□□□□□ -0.48
Cux1P53564 Nup210l-202ENSMUST00000200410 5710 ntAPPRIS ALT2 TSL 5 BASIC12.02□□□□□ -0.48
Cux1P53564 Gm44937-201ENSMUST00000207705 2691 ntBASIC12.02□□□□□ -0.48
Retrieved 100 of 76,532 protein–RNA pairs in 62.9 ms