Protein–RNA interactions for Protein: P53564

Cux1, Homeobox protein cut-like 1, mousemouse

Predictions only

Length 1,515 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cux1P53564 Obox4-ps16-201ENSMUST00000177624 1137 ntBASIC12.08□□□□□ -0.48
Cux1P53564 Obox4-ps17-201ENSMUST00000178341 1137 ntBASIC12.08□□□□□ -0.48
Cux1P53564 Obox4-ps18-201ENSMUST00000179441 1137 ntBASIC12.08□□□□□ -0.48
Cux1P53564 Gm23139-201ENSMUST00000179454 132 ntBASIC12.08□□□□□ -0.48
Cux1P53564 Mir8094-201ENSMUST00000183361 117 ntBASIC12.08□□□□□ -0.48
Cux1P53564 Ly6e-208ENSMUST00000188042 714 ntAPPRIS P1 TSL 3 BASIC12.08□□□□□ -0.48
Cux1P53564 Rd3l-204ENSMUST00000190536 1242 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Cux1P53564 Tshb-205ENSMUST00000197322 476 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Cux1P53564 Gm30735-201ENSMUST00000199488 726 ntTSL 3 BASIC12.08□□□□□ -0.48
Cux1P53564 Gm9652-201ENSMUST00000209345 163 ntBASIC12.08□□□□□ -0.48
Cux1P53564 Olfr1251-203ENSMUST00000214750 1040 ntAPPRIS P1 BASIC12.08□□□□□ -0.48
Cux1P53564 Samd3-206ENSMUST00000220219 1744 ntAPPRIS P4 TSL 5 BASIC12.08□□□□□ -0.48
Cux1P53564 Kcne3-201ENSMUST00000049333 1012 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Cux1P53564 Vmn1r64-201ENSMUST00000078475 1011 ntAPPRIS P1 BASIC12.08□□□□□ -0.48
Cux1P53564 Jakmip2-201ENSMUST00000082254 3511 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Cux1P53564 Cd99l2-201ENSMUST00000037391 3600 ntAPPRIS ALT2 TSL 1 (best) BASIC12.08□□□□□ -0.48
Cux1P53564 Pcdhb8-201ENSMUST00000051163 3334 ntAPPRIS P1 BASIC12.08□□□□□ -0.48
Cux1P53564 Ccnb1-202ENSMUST00000091295 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC12.08□□□□□ -0.48
Cux1P53564 Gm26831-201ENSMUST00000181458 1380 ntBASIC12.08□□□□□ -0.48
Cux1P53564 Nsun3-201ENSMUST00000063089 3813 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Cux1P53564 Phc1-201ENSMUST00000079560 3839 ntAPPRIS P3 TSL 1 (best) BASIC12.08□□□□□ -0.48
Cux1P53564 Adam22-204ENSMUST00000088761 9077 ntAPPRIS ALT2 TSL 1 (best) BASIC12.08□□□□□ -0.48
Cux1P53564 Gm43776-201ENSMUST00000199729 2914 ntBASIC12.08□□□□□ -0.48
Cux1P53564 Wdr76-202ENSMUST00000099473 2315 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
Cux1P53564 Slmapos2-201ENSMUST00000160089 2194 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
Cux1P53564 Parpbp-201ENSMUST00000048518 3594 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Cux1P53564 Zbtb44-202ENSMUST00000167346 1308 ntTSL 3 BASIC12.08□□□□□ -0.48
Cux1P53564 Wdhd1-201ENSMUST00000111790 2962 ntTSL 2 BASIC12.08□□□□□ -0.48
Cux1P53564 Il1rl1-203ENSMUST00000173514 2661 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
Cux1P53564 Mkl1-201ENSMUST00000109579 4154 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Cux1P53564 Nek6-201ENSMUST00000054234 10338 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Cux1P53564 Bcas3-204ENSMUST00000108056 2925 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
Cux1P53564 Sec16a-201ENSMUST00000091252 8737 ntAPPRIS P2 TSL 5 BASIC12.07□□□□□ -0.48
Cux1P53564 Tcf23-201ENSMUST00000006818 4116 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Cux1P53564 S100a1-202ENSMUST00000107340 577 ntTSL 2 BASIC12.07□□□□□ -0.48
Cux1P53564 Rhox3c-201ENSMUST00000115188 1053 ntAPPRIS P1 TSL 5 BASIC12.07□□□□□ -0.48
Cux1P53564 Gm13229-201ENSMUST00000118238 340 ntBASIC12.07□□□□□ -0.48
Cux1P53564 Gm13444-201ENSMUST00000119445 522 ntBASIC12.07□□□□□ -0.48
Cux1P53564 Gm15192-201ENSMUST00000121005 293 ntBASIC12.07□□□□□ -0.48
Cux1P53564 Gm23007-201ENSMUST00000158951 177 ntBASIC12.07□□□□□ -0.48
Cux1P53564 Olfr270-202ENSMUST00000172257 939 ntAPPRIS P2 BASIC12.07□□□□□ -0.48
Cux1P53564 Gm4856-201ENSMUST00000192696 1091 ntBASIC12.07□□□□□ -0.48
Cux1P53564 Gm38079-201ENSMUST00000195603 154 ntBASIC12.07□□□□□ -0.48
Cux1P53564 Gm8896-201ENSMUST00000197434 1106 ntBASIC12.07□□□□□ -0.48
Cux1P53564 Hddc3-209ENSMUST00000206480 454 ntTSL 2 BASIC12.07□□□□□ -0.48
Cux1P53564 Gm45045-201ENSMUST00000207368 218 ntTSL 5 BASIC12.07□□□□□ -0.48
Cux1P53564 Gm32052-201ENSMUST00000212073 799 ntTSL 5 BASIC12.07□□□□□ -0.48
Cux1P53564 Gm39383-201ENSMUST00000216894 1009 ntTSL 5 BASIC12.07□□□□□ -0.48
Cux1P53564 Gm7712-201ENSMUST00000222214 337 ntTSL 5 BASIC12.07□□□□□ -0.48
Cux1P53564 Gm34047-201ENSMUST00000223547 606 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
Cux1P53564 Rhox3h-201ENSMUST00000096457 1053 ntAPPRIS P1 TSL 5 BASIC12.07□□□□□ -0.48
Cux1P53564 Bmpr1a-202ENSMUST00000165280 1945 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
Cux1P53564 Ehmt1-204ENSMUST00000114418 4902 ntAPPRIS ALT2 TSL 5 BASIC12.07□□□□□ -0.48
Cux1P53564 Gsap-201ENSMUST00000036031 3745 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Cux1P53564 C7-201ENSMUST00000110689 2676 ntAPPRIS P1 TSL 5 BASIC12.07□□□□□ -0.48
Cux1P53564 4921509C19Rik-201ENSMUST00000080132 2684 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Cux1P53564 Egf-202ENSMUST00000197079 3346 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
Cux1P53564 4933427D14Rik-201ENSMUST00000108505 1495 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
Cux1P53564 Col4a5-201ENSMUST00000112930 6285 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Cux1P53564 Sox5os1-201ENSMUST00000156994 1585 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
Cux1P53564 Gm10259-201ENSMUST00000091289 1590 ntBASIC12.07□□□□□ -0.48
Cux1P53564 Eea1-201ENSMUST00000053484 7749 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Cux1P53564 Gm10619-201ENSMUST00000098372 2695 ntTSL 5 BASIC12.07□□□□□ -0.48
Cux1P53564 Filip1-201ENSMUST00000093811 4640 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Cux1P53564 H6pd-202ENSMUST00000084117 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC12.06□□□□□ -0.48
Cux1P53564 Gm23701-201ENSMUST00000103893 110 ntBASIC12.06□□□□□ -0.48
Cux1P53564 Gm13735-201ENSMUST00000120217 670 ntBASIC12.06□□□□□ -0.48
Cux1P53564 Gm15123-201ENSMUST00000138988 339 ntTSL 3 BASIC12.06□□□□□ -0.48
Cux1P53564 Gm16143-201ENSMUST00000155982 538 ntTSL 5 BASIC12.06□□□□□ -0.48
Cux1P53564 Mgst2-206ENSMUST00000161590 481 ntTSL 3 BASIC12.06□□□□□ -0.48
Cux1P53564 Rpl31-ps25-201ENSMUST00000181557 379 ntBASIC12.06□□□□□ -0.48
Cux1P53564 Gm37883-201ENSMUST00000194970 725 ntBASIC12.06□□□□□ -0.48
Cux1P53564 Gm33370-201ENSMUST00000195935 489 ntTSL 2 BASIC12.06□□□□□ -0.48
Cux1P53564 Gm2762-203ENSMUST00000201658 1234 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
Cux1P53564 Gm31013-201ENSMUST00000213576 715 ntTSL 3 BASIC12.06□□□□□ -0.48
Cux1P53564 Vmn1r76-201ENSMUST00000058772 975 ntAPPRIS P2 BASIC12.06□□□□□ -0.48
Cux1P53564 Gm10108-201ENSMUST00000078246 319 ntBASIC12.06□□□□□ -0.48
Cux1P53564 AC164437.4-202ENSMUST00000228794 2413 ntBASIC12.06□□□□□ -0.48
Cux1P53564 Ggt5-201ENSMUST00000072217 4410 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Cux1P53564 Rab36-206ENSMUST00000146440 2952 ntAPPRIS P1 TSL 5 BASIC12.06□□□□□ -0.48
Cux1P53564 Synj2bp-204ENSMUST00000164431 3305 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
Cux1P53564 Ccdc77-201ENSMUST00000032283 2610 ntAPPRIS P2 TSL 1 (best) BASIC12.06□□□□□ -0.48
Cux1P53564 5330417C22Rik-201ENSMUST00000048012 3321 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
Cux1P53564 F630040K05Rik-201ENSMUST00000180519 2841 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
Cux1P53564 AC107452.3-201ENSMUST00000228807 1308 ntBASIC12.06□□□□□ -0.48
Cux1P53564 Lyn-202ENSMUST00000103010 3387 ntAPPRIS P3 TSL 1 (best) BASIC12.06□□□□□ -0.48
Cux1P53564 Xntrpc-201ENSMUST00000084843 4173 ntAPPRIS P1 TSL 5 BASIC12.06□□□□□ -0.48
Cux1P53564 Clip1-203ENSMUST00000111561 5883 ntAPPRIS ALT2 TSL 5 BASIC12.06□□□□□ -0.48
Cux1P53564 Son-202ENSMUST00000114037 8399 ntAPPRIS P2 TSL 1 (best) BASIC12.06□□□□□ -0.48
Cux1P53564 Srp54a-201ENSMUST00000021407 1515 ntAPPRIS P1 TSL 5 BASIC12.06□□□□□ -0.48
Cux1P53564 Blm-201ENSMUST00000081314 4598 ntAPPRIS P3 TSL 1 (best) BASIC12.06□□□□□ -0.48
Cux1P53564 Ankef1-202ENSMUST00000121717 2875 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Cux1P53564 Zfp207-208ENSMUST00000188489 2898 ntAPPRIS ALT1 TSL 2 BASIC12.06□□□□□ -0.48
Cux1P53564 0610037L13Rik-212ENSMUST00000135454 2997 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Cux1P53564 Slc24a2-202ENSMUST00000107155 2171 ntTSL 5 BASIC12.06□□□□□ -0.48
Cux1P53564 Gm16121-201ENSMUST00000128520 2253 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
Cux1P53564 Gm12158-201ENSMUST00000130493 631 ntTSL 3 BASIC12.06□□□□□ -0.48
Cux1P53564 Gm29605-201ENSMUST00000190800 292 ntBASIC12.06□□□□□ -0.48
Cux1P53564 AC069562.1-201ENSMUST00000224206 434 ntBASIC12.06□□□□□ -0.48
Cux1P53564 CT009711.2-202ENSMUST00000224538 973 ntBASIC12.06□□□□□ -0.48
Retrieved 100 of 76,532 protein–RNA pairs in 57.8 ms