Protein–RNA interactions for Protein: Q9R053

Scn11a, Sodium channel protein type 11 subunit alpha, mousemouse

Predictions only

Length 1,765 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn11aQ9R053 Atp6v1b1-206ENSMUST00000206911 1591 ntTSL 1 (best) BASIC22.5■■□□□ 1.19
Scn11aQ9R053 P2ry2-202ENSMUST00000178340 2137 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
Scn11aQ9R053 Fkbp9-201ENSMUST00000031795 3009 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
Scn11aQ9R053 Foxg1-201ENSMUST00000021333 2941 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
Scn11aQ9R053 Cfap206-202ENSMUST00000108136 1688 ntTSL 1 (best) BASIC22.5■■□□□ 1.19
Scn11aQ9R053 Echs1-201ENSMUST00000026538 1557 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
Scn11aQ9R053 Angptl6-201ENSMUST00000043726 1582 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
Scn11aQ9R053 Cln5-201ENSMUST00000022721 2445 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
Scn11aQ9R053 Gm11643-201ENSMUST00000119578 864 ntBASIC22.5■■□□□ 1.19
Scn11aQ9R053 2700033N17Rik-201ENSMUST00000140185 721 ntTSL 1 (best) BASIC22.5■■□□□ 1.19
Scn11aQ9R053 Lamtor5-202ENSMUST00000199317 743 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
Scn11aQ9R053 Prrg2-201ENSMUST00000007981 1295 ntAPPRIS P2 TSL 1 (best) BASIC22.5■■□□□ 1.19
Scn11aQ9R053 Dpf1-201ENSMUST00000049977 2309 ntAPPRIS P2 TSL 1 (best) BASIC22.5■■□□□ 1.19
Scn11aQ9R053 Bhlhe23-201ENSMUST00000108878 2520 ntAPPRIS P1 BASIC22.5■■□□□ 1.19
Scn11aQ9R053 Snrnp70-201ENSMUST00000074575 1735 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
Scn11aQ9R053 Gm8309-201ENSMUST00000206627 1448 ntBASIC22.49■■□□□ 1.19
Scn11aQ9R053 Tnnt2-202ENSMUST00000112085 1076 ntAPPRIS ALT2 TSL 5 BASIC22.49■■□□□ 1.19
Scn11aQ9R053 Tnnt2-203ENSMUST00000112086 1094 ntAPPRIS ALT2 TSL 5 BASIC22.49■■□□□ 1.19
Scn11aQ9R053 Tnnt2-204ENSMUST00000112087 1112 ntAPPRIS ALT2 TSL 5 BASIC22.49■■□□□ 1.19
Scn11aQ9R053 Gm16120-201ENSMUST00000127990 808 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
Scn11aQ9R053 Tnnt2-206ENSMUST00000178854 1076 ntAPPRIS ALT2 TSL 5 BASIC22.49■■□□□ 1.19
Scn11aQ9R053 Tnnt2-211ENSMUST00000189355 1112 ntAPPRIS ALT2 TSL 5 BASIC22.49■■□□□ 1.19
Scn11aQ9R053 Tnnt2-212ENSMUST00000189732 1123 ntAPPRIS ALT2 TSL 5 BASIC22.49■■□□□ 1.19
Scn11aQ9R053 Dbndd1-202ENSMUST00000176286 1344 ntTSL 1 (best) BASIC22.48■■□□□ 1.19
Scn11aQ9R053 Txndc15-201ENSMUST00000021959 1527 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
Scn11aQ9R053 Hsf1-204ENSMUST00000226872 2104 ntBASIC22.48■■□□□ 1.19
Scn11aQ9R053 Tsc22d1-214ENSMUST00000177207 1476 ntTSL 3 BASIC22.48■■□□□ 1.19
Scn11aQ9R053 Smim1-212ENSMUST00000146543 839 ntTSL 1 (best) BASIC22.48■■□□□ 1.19
Scn11aQ9R053 Wnt10b-205ENSMUST00000226846 1204 ntBASIC22.48■■□□□ 1.19
Scn11aQ9R053 Cdkl3-204ENSMUST00000109077 2605 ntAPPRIS ALT2 TSL 5 BASIC22.48■■□□□ 1.19
Scn11aQ9R053 Krt87-201ENSMUST00000081945 1826 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
Scn11aQ9R053 Edn2-201ENSMUST00000030384 1462 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
Scn11aQ9R053 Gm11249-201ENSMUST00000117071 859 ntBASIC22.48■■□□□ 1.19
Scn11aQ9R053 Aprt-204ENSMUST00000212093 723 ntTSL 2 BASIC22.48■■□□□ 1.19
Scn11aQ9R053 Prmt9-201ENSMUST00000056237 2781 ntAPPRIS P2 TSL 1 (best) BASIC22.48■■□□□ 1.19
Scn11aQ9R053 Cpne7-201ENSMUST00000037900 2398 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
Scn11aQ9R053 Sept7-201ENSMUST00000115272 2533 ntAPPRIS ALT1 TSL 5 BASIC22.47■■□□□ 1.19
Scn11aQ9R053 Tpra1-201ENSMUST00000055022 1820 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
Scn11aQ9R053 Ssx2ip-203ENSMUST00000106151 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC22.47■■□□□ 1.19
Scn11aQ9R053 Gm15847-201ENSMUST00000121417 1065 ntBASIC22.47■■□□□ 1.19
Scn11aQ9R053 Azi2-205ENSMUST00000133580 2156 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
Scn11aQ9R053 Cyp4f15-204ENSMUST00000168171 2168 ntAPPRIS P3 TSL 1 (best) BASIC22.47■■□□□ 1.19
Scn11aQ9R053 Ube2d2a-202ENSMUST00000170693 2483 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
Scn11aQ9R053 Gm45472-201ENSMUST00000211295 1426 ntTSL 5 BASIC22.47■■□□□ 1.19
Scn11aQ9R053 AC061963.1-203ENSMUST00000213473 453 ntTSL 3 BASIC22.47■■□□□ 1.19
Scn11aQ9R053 Gpr137-202ENSMUST00000099774 1434 ntTSL 1 (best) BASIC22.47■■□□□ 1.19
Scn11aQ9R053 Gm16759-201ENSMUST00000126238 1393 ntTSL 1 (best) BASIC22.47■■□□□ 1.19
Scn11aQ9R053 Fev-201ENSMUST00000068631 1490 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
Scn11aQ9R053 Icam2-201ENSMUST00000001055 1282 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
Scn11aQ9R053 Gm5643-201ENSMUST00000117081 966 ntBASIC22.46■■□□□ 1.19
Scn11aQ9R053 Creb1-203ENSMUST00000171164 1287 ntTSL 1 (best) BASIC22.46■■□□□ 1.19
Scn11aQ9R053 AC160393.1-201ENSMUST00000218378 1279 ntBASIC22.46■■□□□ 1.19
Scn11aQ9R053 Mdfi-201ENSMUST00000035375 1371 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
Scn11aQ9R053 Gm45709-201ENSMUST00000213052 1075 ntTSL 5 BASIC22.45■■□□□ 1.19
Scn11aQ9R053 AC163280.1-201ENSMUST00000228194 1100 ntBASIC22.45■■□□□ 1.19
Scn11aQ9R053 Paox-202ENSMUST00000097967 1024 ntTSL 1 (best) BASIC22.45■■□□□ 1.19
Scn11aQ9R053 Pacsin2-201ENSMUST00000056177 2795 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
Scn11aQ9R053 Flot1-201ENSMUST00000001569 1825 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
Scn11aQ9R053 Irx2-201ENSMUST00000074372 2625 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
Scn11aQ9R053 Coq10b-201ENSMUST00000027125 1733 ntAPPRIS ALT2 TSL 1 (best) BASIC22.45■■□□□ 1.18
Scn11aQ9R053 Snca-201ENSMUST00000114268 1280 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
Scn11aQ9R053 Gm6576-201ENSMUST00000169678 883 ntBASIC22.45■■□□□ 1.18
Scn11aQ9R053 Xpa-201ENSMUST00000030013 955 ntAPPRIS P2 TSL 1 (best) BASIC22.45■■□□□ 1.18
Scn11aQ9R053 Tpsb2-201ENSMUST00000069616 1081 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
Scn11aQ9R053 Gm10638-201ENSMUST00000098532 905 ntAPPRIS P1 BASIC22.45■■□□□ 1.18
Scn11aQ9R053 Numbl-201ENSMUST00000079258 2760 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
Scn11aQ9R053 Gart-202ENSMUST00000120450 1865 ntTSL 1 (best) BASIC22.44■■□□□ 1.18
Scn11aQ9R053 Slc35f5-201ENSMUST00000027580 2733 ntAPPRIS P1 TSL 1 (best) BASIC22.44■■□□□ 1.18
Scn11aQ9R053 Cwh43-202ENSMUST00000065543 2316 ntTSL 1 (best) BASIC22.44■■□□□ 1.18
Scn11aQ9R053 Dmrta2os-202ENSMUST00000141893 691 ntTSL 3 BASIC22.44■■□□□ 1.18
Scn11aQ9R053 Gm10819-201ENSMUST00000099988 561 ntBASIC22.44■■□□□ 1.18
Scn11aQ9R053 Irx3-201ENSMUST00000093312 2610 ntAPPRIS P4 TSL 1 (best) BASIC22.44■■□□□ 1.18
Scn11aQ9R053 Rab3il1-201ENSMUST00000113161 2225 ntAPPRIS P3 TSL 5 BASIC22.44■■□□□ 1.18
Scn11aQ9R053 Tmem11-203ENSMUST00000168218 1511 ntTSL 2 BASIC22.44■■□□□ 1.18
Scn11aQ9R053 Gm17035-201ENSMUST00000170557 419 ntTSL 3 BASIC22.43■■□□□ 1.18
Scn11aQ9R053 Spg7-211ENSMUST00000153285 2481 ntAPPRIS ALT2 TSL 5 BASIC22.43■■□□□ 1.18
Scn11aQ9R053 Ddost-201ENSMUST00000030538 2120 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
Scn11aQ9R053 Gm44899-201ENSMUST00000207451 391 ntTSL 3 BASIC22.43■■□□□ 1.18
Scn11aQ9R053 6530437J22Rik-201ENSMUST00000207515 773 ntTSL 1 (best) BASIC22.43■■□□□ 1.18
Scn11aQ9R053 Mpc2-201ENSMUST00000027853 1025 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
Scn11aQ9R053 Fbxo7-202ENSMUST00000117597 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC22.42■■□□□ 1.18
Scn11aQ9R053 Phc2-202ENSMUST00000106079 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC22.42■■□□□ 1.18
Scn11aQ9R053 Ccdc124-201ENSMUST00000007865 1356 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
Scn11aQ9R053 1700026D11Rik-201ENSMUST00000126910 2033 ntTSL 1 (best) BASIC22.42■■□□□ 1.18
Scn11aQ9R053 AC107452.1-201ENSMUST00000227963 481 ntBASIC22.42■■□□□ 1.18
Scn11aQ9R053 Hsbp1-201ENSMUST00000034300 1208 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
Scn11aQ9R053 Fiz1-204ENSMUST00000207030 2178 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
Scn11aQ9R053 Blcap-202ENSMUST00000109528 2056 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
Scn11aQ9R053 Meis3-205ENSMUST00000176506 1839 ntTSL 1 (best) BASIC22.42■■□□□ 1.18
Scn11aQ9R053 Tgif1-209ENSMUST00000166395 1714 ntTSL 1 (best) BASIC22.42■■□□□ 1.18
Scn11aQ9R053 Zfp213-201ENSMUST00000095606 2672 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
Scn11aQ9R053 Gm10698-201ENSMUST00000182663 604 ntBASIC22.41■■□□□ 1.18
Scn11aQ9R053 Nr2c2ap-202ENSMUST00000211898 1078 ntAPPRIS ALT2 TSL 1 (best) BASIC22.41■■□□□ 1.18
Scn11aQ9R053 Fkbp11-201ENSMUST00000003445 731 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
Scn11aQ9R053 Sephs1-202ENSMUST00000115019 2933 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
Scn11aQ9R053 Man2c1os-201ENSMUST00000125333 1910 ntTSL 1 (best) BASIC22.41■■□□□ 1.18
Scn11aQ9R053 Psmd6-201ENSMUST00000022256 1387 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
Scn11aQ9R053 Paqr3-201ENSMUST00000069453 1375 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
Scn11aQ9R053 Neto2-205ENSMUST00000216286 2932 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
Scn11aQ9R053 Dleu2-210ENSMUST00000183054 722 ntTSL 5 BASIC22.4■■□□□ 1.18
Retrieved 100 of 76,532 protein–RNA pairs in 19.5 ms