Protein–RNA interactions for Protein: Q9EPU4

Cpsf1, Cleavage and polyadenylation specificity factor subunit 1, mousemouse

Known RBP Predictions only

Length 1,441 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cpsf1Q9EPU4 Actl6a-201ENSMUST00000029214 2010 ntAPPRIS P1 TSL 1 (best) BASIC26.11■■□□□ 1.77
Cpsf1Q9EPU4 Nnat-210ENSMUST00000173839 1135 ntTSL 1 (best) BASIC26.11■■□□□ 1.77
Cpsf1Q9EPU4 Pstk-201ENSMUST00000075610 1135 ntAPPRIS P1 TSL 1 (best) BASIC26.11■■□□□ 1.77
Cpsf1Q9EPU4 Ttc32-202ENSMUST00000219470 1645 ntTSL 1 (best) BASIC26.11■■□□□ 1.77
Cpsf1Q9EPU4 Bicdl1-203ENSMUST00000118576 1874 ntTSL 1 (best) BASIC26.11■■□□□ 1.77
Cpsf1Q9EPU4 P2rx4-202ENSMUST00000081554 1887 ntTSL 1 (best) BASIC26.11■■□□□ 1.77
Cpsf1Q9EPU4 Nkx2-3-201ENSMUST00000057178 2112 ntAPPRIS P1 TSL 1 (best) BASIC26.11■■□□□ 1.77
Cpsf1Q9EPU4 Tmem79-203ENSMUST00000107553 2053 ntAPPRIS P1 TSL 1 (best) BASIC26.1■■□□□ 1.77
Cpsf1Q9EPU4 2610035F20Rik-202ENSMUST00000177306 1149 ntTSL 1 (best) BASIC26.1■■□□□ 1.77
Cpsf1Q9EPU4 Crb3-202ENSMUST00000097299 1206 ntAPPRIS P3 TSL 1 (best) BASIC26.1■■□□□ 1.77
Cpsf1Q9EPU4 Cacfd1-202ENSMUST00000114004 2194 ntTSL 1 (best) BASIC26.1■■□□□ 1.77
Cpsf1Q9EPU4 Galnt11-201ENSMUST00000045737 2552 ntAPPRIS P1 TSL 1 (best) BASIC26.1■■□□□ 1.77
Cpsf1Q9EPU4 Relb-202ENSMUST00000094762 2209 ntAPPRIS P3 TSL 1 (best) BASIC26.1■■□□□ 1.77
Cpsf1Q9EPU4 Relb-203ENSMUST00000098754 2203 ntAPPRIS ALT2 TSL 5 BASIC26.1■■□□□ 1.77
Cpsf1Q9EPU4 Rprm-201ENSMUST00000100089 1460 ntAPPRIS P1 BASIC26.1■■□□□ 1.77
Cpsf1Q9EPU4 Zyg11a-202ENSMUST00000106690 2421 ntAPPRIS ALT2 TSL 5 BASIC26.09■■□□□ 1.77
Cpsf1Q9EPU4 Hdhd5-201ENSMUST00000075303 1928 ntAPPRIS P1 TSL 1 (best) BASIC26.09■■□□□ 1.77
Cpsf1Q9EPU4 Svbp-203ENSMUST00000106345 684 ntTSL 2 BASIC26.09■■□□□ 1.77
Cpsf1Q9EPU4 Josd2-204ENSMUST00000118628 864 ntAPPRIS P1 TSL 2 BASIC26.09■■□□□ 1.77
Cpsf1Q9EPU4 Alcam-206ENSMUST00000168071 878 ntTSL 1 (best) BASIC26.09■■□□□ 1.77
Cpsf1Q9EPU4 Naxe-201ENSMUST00000029708 908 ntAPPRIS P1 TSL 1 (best) BASIC26.09■■□□□ 1.77
Cpsf1Q9EPU4 Josd2-201ENSMUST00000035844 930 ntAPPRIS P1 TSL 1 (best) BASIC26.09■■□□□ 1.77
Cpsf1Q9EPU4 Alg1-202ENSMUST00000100196 1755 ntAPPRIS P2 TSL 1 (best) BASIC26.09■■□□□ 1.77
Cpsf1Q9EPU4 Slc35f4-202ENSMUST00000123534 2748 ntTSL 1 (best) BASIC26.09■■□□□ 1.77
Cpsf1Q9EPU4 Spns2-201ENSMUST00000045303 3241 ntAPPRIS P1 TSL 1 (best) BASIC26.08■■□□□ 1.77
Cpsf1Q9EPU4 Gm16141-201ENSMUST00000152073 790 ntTSL 1 (best) BASIC26.08■■□□□ 1.77
Cpsf1Q9EPU4 Gm44878-201ENSMUST00000205812 1295 ntBASIC26.08■■□□□ 1.77
Cpsf1Q9EPU4 Gm44672-201ENSMUST00000206944 1098 ntBASIC26.08■■□□□ 1.77
Cpsf1Q9EPU4 Gm44549-201ENSMUST00000208351 577 ntBASIC26.08■■□□□ 1.77
Cpsf1Q9EPU4 Tnnt2-201ENSMUST00000027671 1064 ntAPPRIS ALT2 TSL 5 BASIC26.08■■□□□ 1.77
Cpsf1Q9EPU4 Hist2h2ac-201ENSMUST00000090782 520 ntAPPRIS P1 BASIC26.08■■□□□ 1.77
Cpsf1Q9EPU4 Tcp1-201ENSMUST00000089024 1902 ntTSL 1 (best) BASIC26.08■■□□□ 1.77
Cpsf1Q9EPU4 Twist2-202ENSMUST00000186075 2525 ntAPPRIS P1 BASIC26.08■■□□□ 1.77
Cpsf1Q9EPU4 Acy3-201ENSMUST00000054030 1505 ntAPPRIS P1 TSL 1 (best) BASIC26.08■■□□□ 1.77
Cpsf1Q9EPU4 Lin7a-203ENSMUST00000218031 1769 ntTSL 1 (best) BASIC26.07■■□□□ 1.76
Cpsf1Q9EPU4 Gm13168-201ENSMUST00000121771 632 ntBASIC26.07■■□□□ 1.76
Cpsf1Q9EPU4 Gm2990-201ENSMUST00000180662 1118 ntTSL 1 (best) BASIC26.07■■□□□ 1.76
Cpsf1Q9EPU4 Trmt13-210ENSMUST00000198454 880 ntBASIC26.07■■□□□ 1.76
Cpsf1Q9EPU4 Lrch3-208ENSMUST00000165616 1875 ntTSL 5 BASIC26.07■■□□□ 1.76
Cpsf1Q9EPU4 Lbp-202ENSMUST00000109491 1322 ntTSL 2 BASIC26.07■■□□□ 1.76
Cpsf1Q9EPU4 Btnl9-202ENSMUST00000066531 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC26.07■■□□□ 1.76
Cpsf1Q9EPU4 Cpne2-201ENSMUST00000048653 2342 ntAPPRIS P2 TSL 1 (best) BASIC26.06■■□□□ 1.76
Cpsf1Q9EPU4 Gm37805-201ENSMUST00000192612 1094 ntBASIC26.06■■□□□ 1.76
Cpsf1Q9EPU4 AC140264.2-202ENSMUST00000218746 817 ntBASIC26.06■■□□□ 1.76
Cpsf1Q9EPU4 Dynll2-204ENSMUST00000178105 2187 ntAPPRIS P1 TSL 1 (best) BASIC26.06■■□□□ 1.76
Cpsf1Q9EPU4 Cox18-201ENSMUST00000048363 1333 ntAPPRIS P3 TSL 1 (best) BASIC26.06■■□□□ 1.76
Cpsf1Q9EPU4 Slc25a10-201ENSMUST00000026899 2023 ntAPPRIS P1 TSL 1 (best) BASIC26.06■■□□□ 1.76
Cpsf1Q9EPU4 Cstf2-202ENSMUST00000113286 2717 ntTSL 1 (best) BASIC26.06■■□□□ 1.76
Cpsf1Q9EPU4 Mbip-201ENSMUST00000021416 1512 ntAPPRIS P1 TSL 1 (best) BASIC26.05■■□□□ 1.76
Cpsf1Q9EPU4 1110004F10Rik-202ENSMUST00000106607 1153 ntTSL 1 (best) BASIC26.05■■□□□ 1.76
Cpsf1Q9EPU4 Mrpl10-202ENSMUST00000054252 744 ntTSL 5 BASIC26.05■■□□□ 1.76
Cpsf1Q9EPU4 Klhdc4-205ENSMUST00000174192 1584 ntTSL 5 BASIC26.05■■□□□ 1.76
Cpsf1Q9EPU4 Bmpr1b-203ENSMUST00000106230 2147 ntAPPRIS P1 TSL 1 (best) BASIC26.05■■□□□ 1.76
Cpsf1Q9EPU4 Notumos-201ENSMUST00000151998 2659 ntBASIC26.05■■□□□ 1.76
Cpsf1Q9EPU4 Gm4737-201ENSMUST00000059524 2093 ntAPPRIS P1 BASIC26.05■■□□□ 1.76
Cpsf1Q9EPU4 Naa50-202ENSMUST00000063542 2136 ntTSL 1 (best) BASIC26.05■■□□□ 1.76
Cpsf1Q9EPU4 Cfl1-201ENSMUST00000116560 1148 ntTSL 5 BASIC26.05■■□□□ 1.76
Cpsf1Q9EPU4 1700067K01Rik-201ENSMUST00000060357 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC26.05■■□□□ 1.76
Cpsf1Q9EPU4 Gm11769-201ENSMUST00000140273 1657 ntTSL 1 (best) BASIC26.04■■□□□ 1.76
Cpsf1Q9EPU4 BC021767-201ENSMUST00000126387 1716 ntBASIC26.04■■□□□ 1.76
Cpsf1Q9EPU4 Snrnp70-201ENSMUST00000074575 1735 ntAPPRIS P1 TSL 1 (best) BASIC26.04■■□□□ 1.76
Cpsf1Q9EPU4 Vps26a-201ENSMUST00000092473 2712 ntTSL 1 (best) BASIC26.04■■□□□ 1.76
Cpsf1Q9EPU4 Nnat-205ENSMUST00000153739 1146 ntAPPRIS ALT1 TSL 1 (best) BASIC26.04■■□□□ 1.76
Cpsf1Q9EPU4 Nnat-206ENSMUST00000172487 404 ntTSL 5 BASIC26.04■■□□□ 1.76
Cpsf1Q9EPU4 Dnajb2-201ENSMUST00000055223 1199 ntTSL 5 BASIC26.04■■□□□ 1.76
Cpsf1Q9EPU4 Socs2-213ENSMUST00000170690 2195 ntAPPRIS P1 TSL 3 BASIC26.04■■□□□ 1.76
Cpsf1Q9EPU4 Rilpl2-201ENSMUST00000031347 1391 ntAPPRIS P1 TSL 1 (best) BASIC26.03■■□□□ 1.76
Cpsf1Q9EPU4 Phf23-204ENSMUST00000133485 1607 ntTSL 5 BASIC26.03■■□□□ 1.76
Cpsf1Q9EPU4 Klc3-203ENSMUST00000108458 1823 ntTSL 1 (best) BASIC26.03■■□□□ 1.76
Cpsf1Q9EPU4 Ccdc59-201ENSMUST00000020049 1813 ntAPPRIS P1 TSL 1 (best) BASIC26.03■■□□□ 1.76
Cpsf1Q9EPU4 Rps2-ps3-201ENSMUST00000213102 832 ntBASIC26.03■■□□□ 1.76
Cpsf1Q9EPU4 AC061963.1-203ENSMUST00000213473 453 ntTSL 3 BASIC26.03■■□□□ 1.76
Cpsf1Q9EPU4 Fgf22-203ENSMUST00000219981 1070 ntTSL 1 (best) BASIC26.03■■□□□ 1.76
Cpsf1Q9EPU4 AC107452.1-201ENSMUST00000227963 481 ntBASIC26.03■■□□□ 1.76
Cpsf1Q9EPU4 Krt4-201ENSMUST00000023797 2132 ntAPPRIS P1 TSL 1 (best) BASIC26.03■■□□□ 1.76
Cpsf1Q9EPU4 Klk9-201ENSMUST00000005891 1476 ntAPPRIS P1 TSL 1 (best) BASIC26.03■■□□□ 1.76
Cpsf1Q9EPU4 Gm9725-202ENSMUST00000166229 2326 ntTSL 5 BASIC26.02■■□□□ 1.76
Cpsf1Q9EPU4 Il15ra-201ENSMUST00000078834 1600 ntAPPRIS P3 TSL 5 BASIC26.02■■□□□ 1.76
Cpsf1Q9EPU4 Txnrd2-203ENSMUST00000115606 1905 ntAPPRIS P2 TSL 1 (best) BASIC26.02■■□□□ 1.76
Cpsf1Q9EPU4 Aadat-201ENSMUST00000079472 1972 ntAPPRIS P2 TSL 1 (best) BASIC26.02■■□□□ 1.76
Cpsf1Q9EPU4 Bnip1-201ENSMUST00000015725 1085 ntAPPRIS P1 TSL 1 (best) BASIC26.02■■□□□ 1.76
Cpsf1Q9EPU4 Gm27275-201ENSMUST00000184318 272 ntBASIC26.02■■□□□ 1.76
Cpsf1Q9EPU4 Rpl18-202ENSMUST00000209287 1027 ntTSL 3 BASIC26.02■■□□□ 1.76
Cpsf1Q9EPU4 Gm45822-201ENSMUST00000212231 259 ntTSL 3 BASIC26.02■■□□□ 1.76
Cpsf1Q9EPU4 Gm45894-202ENSMUST00000212728 1097 ntTSL 1 (best) BASIC26.02■■□□□ 1.76
Cpsf1Q9EPU4 Sox15-201ENSMUST00000047373 861 ntAPPRIS P1 TSL 1 (best) BASIC26.02■■□□□ 1.76
Cpsf1Q9EPU4 Gabarap-201ENSMUST00000018711 1351 ntAPPRIS P1 TSL 1 (best) BASIC26.02■■□□□ 1.76
Cpsf1Q9EPU4 Dio3-201ENSMUST00000097228 1449 ntBASIC26.02■■□□□ 1.76
Cpsf1Q9EPU4 AU022751-201ENSMUST00000101698 1838 ntAPPRIS ALT2 TSL 1 (best) BASIC26.02■■□□□ 1.76
Cpsf1Q9EPU4 Tsks-202ENSMUST00000120929 1843 ntAPPRIS ALT2 TSL 1 (best) BASIC26.02■■□□□ 1.76
Cpsf1Q9EPU4 Mfsd10-201ENSMUST00000001109 1907 ntAPPRIS P1 TSL 1 (best) BASIC26.01■■□□□ 1.75
Cpsf1Q9EPU4 Pacsin3-215ENSMUST00000168916 1859 ntAPPRIS P1 TSL 1 (best) BASIC26.01■■□□□ 1.75
Cpsf1Q9EPU4 Tnfsf11-201ENSMUST00000022592 2236 ntAPPRIS P1 TSL 1 (best) BASIC26.01■■□□□ 1.75
Cpsf1Q9EPU4 Pacsin3-201ENSMUST00000028694 1862 ntAPPRIS P1 TSL 1 (best) BASIC26.01■■□□□ 1.75
Cpsf1Q9EPU4 Ptpmt1-203ENSMUST00000125001 3183 ntTSL 1 (best) BASIC26.01■■□□□ 1.75
Cpsf1Q9EPU4 Atf1-201ENSMUST00000023769 2365 ntAPPRIS P1 TSL 1 (best) BASIC26.01■■□□□ 1.75
Cpsf1Q9EPU4 B4galt4-205ENSMUST00000114712 2168 ntAPPRIS P1 TSL 1 (best) BASIC26■■□□□ 1.75
Cpsf1Q9EPU4 Ern1-203ENSMUST00000106800 654 ntTSL 3 BASIC26■■□□□ 1.75
Cpsf1Q9EPU4 Mrps10-201ENSMUST00000060752 1109 ntTSL 5 BASIC26■■□□□ 1.75
Cpsf1Q9EPU4 Src-203ENSMUST00000109529 2020 ntTSL 1 (best) BASIC25.99■■□□□ 1.75
Retrieved 100 of 76,532 protein–RNA pairs in 37.2 ms