Protein–RNA interactions for Protein: Q9EPU0

Upf1, Regulator of nonsense transcripts 1, mousemouse

Known RBP Predictions only

Length 1,124 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf1Q9EPU0 Gm11713-201ENSMUST00000139941 523 ntTSL 3 BASIC21.56■■□□□ 1.04
Upf1Q9EPU0 Prr3-209ENSMUST00000174849 581 ntTSL 2 BASIC21.56■■□□□ 1.04
Upf1Q9EPU0 4930544D05Rik-204ENSMUST00000180052 755 ntAPPRIS ALT2 TSL 5 BASIC21.56■■□□□ 1.04
Upf1Q9EPU0 Krt10-202ENSMUST00000211768 557 ntTSL 3 BASIC21.56■■□□□ 1.04
Upf1Q9EPU0 AC160393.1-201ENSMUST00000218378 1279 ntBASIC21.56■■□□□ 1.04
Upf1Q9EPU0 Fbxo27-203ENSMUST00000108281 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC21.56■■□□□ 1.04
Upf1Q9EPU0 Dmap1-201ENSMUST00000102687 1566 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
Upf1Q9EPU0 Fgfrl1-202ENSMUST00000112560 2318 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
Upf1Q9EPU0 4930554G22Rik-201ENSMUST00000196102 686 ntBASIC21.55■■□□□ 1.04
Upf1Q9EPU0 9530080O11Rik-201ENSMUST00000137239 1475 ntTSL 2 BASIC21.55■■□□□ 1.04
Upf1Q9EPU0 Wipi2-202ENSMUST00000110778 1959 ntAPPRIS P1 TSL 5 BASIC21.55■■□□□ 1.04
Upf1Q9EPU0 Rcl1-201ENSMUST00000064393 1803 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
Upf1Q9EPU0 Prkra-201ENSMUST00000002808 1614 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
Upf1Q9EPU0 Ryk-201ENSMUST00000035142 2852 ntAPPRIS ALT2 TSL 1 (best) BASIC21.54■■□□□ 1.04
Upf1Q9EPU0 Lrrc14-201ENSMUST00000036423 2093 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
Upf1Q9EPU0 5033417F24Rik-201ENSMUST00000181575 1787 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
Upf1Q9EPU0 Gm15889-201ENSMUST00000159142 1083 ntTSL 3 BASIC21.54■■□□□ 1.04
Upf1Q9EPU0 Gm17349-201ENSMUST00000163472 300 ntAPPRIS P1 TSL 5 BASIC21.54■■□□□ 1.04
Upf1Q9EPU0 Insl3-201ENSMUST00000034261 623 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
Upf1Q9EPU0 Etfb-201ENSMUST00000004729 893 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
Upf1Q9EPU0 Znhit1-202ENSMUST00000085941 740 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
Upf1Q9EPU0 Cacybp-201ENSMUST00000014370 2098 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
Upf1Q9EPU0 Gm28523-201ENSMUST00000190040 1588 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
Upf1Q9EPU0 Acvr1c-204ENSMUST00000112608 1497 ntAPPRIS ALT2 TSL 5 BASIC21.53■■□□□ 1.04
Upf1Q9EPU0 Lzic-201ENSMUST00000030842 1817 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
Upf1Q9EPU0 D830030K20Rik-204ENSMUST00000225885 1142 ntBASIC21.53■■□□□ 1.04
Upf1Q9EPU0 Bpifa3-201ENSMUST00000028984 1107 ntAPPRIS P3 TSL 1 (best) BASIC21.53■■□□□ 1.04
Upf1Q9EPU0 Ly6g6d-201ENSMUST00000007259 546 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
Upf1Q9EPU0 Ahnak-201ENSMUST00000092955 1046 ntAPPRIS ALT2 TSL 2 BASIC21.53■■□□□ 1.04
Upf1Q9EPU0 Fthl17f-201ENSMUST00000097029 847 ntAPPRIS P1 BASIC21.53■■□□□ 1.04
Upf1Q9EPU0 2610307P16Rik-205ENSMUST00000148885 1870 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
Upf1Q9EPU0 Cers5-201ENSMUST00000023762 2096 ntAPPRIS P2 TSL 1 (best) BASIC21.52■■□□□ 1.04
Upf1Q9EPU0 Ppp1r2-202ENSMUST00000115233 958 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
Upf1Q9EPU0 Hmga1-205ENSMUST00000118599 529 ntAPPRIS P3 TSL 3 BASIC21.52■■□□□ 1.04
Upf1Q9EPU0 Gm28577-201ENSMUST00000176106 741 ntTSL 5 BASIC21.52■■□□□ 1.04
Upf1Q9EPU0 A830052D11Rik-201ENSMUST00000181729 1130 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
Upf1Q9EPU0 Uqcr11-201ENSMUST00000020372 445 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
Upf1Q9EPU0 Cenpp-201ENSMUST00000021818 1144 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
Upf1Q9EPU0 Ndufa6-201ENSMUST00000023085 560 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
Upf1Q9EPU0 Pdlim4-202ENSMUST00000093109 962 ntTSL 5 BASIC21.52■■□□□ 1.04
Upf1Q9EPU0 Gm16432-201ENSMUST00000094273 1663 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
Upf1Q9EPU0 Pomgnt1-203ENSMUST00000106498 2719 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
Upf1Q9EPU0 Ski-201ENSMUST00000030917 5522 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
Upf1Q9EPU0 0610025J13Rik-203ENSMUST00000180374 713 ntTSL 5 BASIC21.51■■□□□ 1.03
Upf1Q9EPU0 Rps2-ps2-201ENSMUST00000194305 881 ntBASIC21.51■■□□□ 1.03
Upf1Q9EPU0 Ogfod2-207ENSMUST00000196627 532 ntTSL 3 BASIC21.51■■□□□ 1.03
Upf1Q9EPU0 Shc3-203ENSMUST00000223543 1241 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
Upf1Q9EPU0 Guca1a-201ENSMUST00000059348 871 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
Upf1Q9EPU0 Zfp783-201ENSMUST00000095946 670 ntBASIC21.51■■□□□ 1.03
Upf1Q9EPU0 Fam71e1-202ENSMUST00000205359 1307 ntAPPRIS ALT2 TSL 2 BASIC21.51■■□□□ 1.03
Upf1Q9EPU0 Adad2-201ENSMUST00000098361 1926 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
Upf1Q9EPU0 Grb2-201ENSMUST00000021090 2709 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
Upf1Q9EPU0 Kctd15-202ENSMUST00000108069 2407 ntAPPRIS P1 TSL 5 BASIC21.5■■□□□ 1.03
Upf1Q9EPU0 Psmd8-203ENSMUST00000186182 1512 ntAPPRIS P2 TSL 1 (best) BASIC21.5■■□□□ 1.03
Upf1Q9EPU0 Dab2-208ENSMUST00000160134 1374 ntAPPRIS ALT2 TSL 5 BASIC21.5■■□□□ 1.03
Upf1Q9EPU0 Pemt-203ENSMUST00000102693 961 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
Upf1Q9EPU0 Rnf186-201ENSMUST00000116094 1249 ntAPPRIS P1 BASIC21.5■■□□□ 1.03
Upf1Q9EPU0 Gm24589-201ENSMUST00000116692 94 ntBASIC21.5■■□□□ 1.03
Upf1Q9EPU0 Lhx1os-201ENSMUST00000126072 589 ntTSL 3 BASIC21.5■■□□□ 1.03
Upf1Q9EPU0 Gm37935-201ENSMUST00000192012 982 ntBASIC21.5■■□□□ 1.03
Upf1Q9EPU0 Olfr464-201ENSMUST00000074874 1084 ntAPPRIS P1 BASIC21.5■■□□□ 1.03
Upf1Q9EPU0 Cdkn3-203ENSMUST00000227149 1952 ntBASIC21.5■■□□□ 1.03
Upf1Q9EPU0 Praf2-201ENSMUST00000033489 1339 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
Upf1Q9EPU0 Slc35b2-201ENSMUST00000041353 2326 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
Upf1Q9EPU0 Sdf4-204ENSMUST00000105579 1670 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
Upf1Q9EPU0 Spsb3-202ENSMUST00000068508 2004 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
Upf1Q9EPU0 Fam213a-202ENSMUST00000118466 1567 ntAPPRIS ALT1 TSL 1 (best) BASIC21.49■■□□□ 1.03
Upf1Q9EPU0 Lsm12-201ENSMUST00000021297 2256 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
Upf1Q9EPU0 4833413E03Rik-201ENSMUST00000013706 1091 ntTSL 5 BASIC21.49■■□□□ 1.03
Upf1Q9EPU0 Mthfsl-204ENSMUST00000186863 725 ntTSL 2 BASIC21.49■■□□□ 1.03
Upf1Q9EPU0 Gm43353-201ENSMUST00000199224 1295 ntBASIC21.49■■□□□ 1.03
Upf1Q9EPU0 AC156832.2-201ENSMUST00000216217 1295 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
Upf1Q9EPU0 AC164629.2-201ENSMUST00000217916 270 ntBASIC21.49■■□□□ 1.03
Upf1Q9EPU0 Pldi-201ENSMUST00000036304 853 ntTSL 2 BASIC21.49■■□□□ 1.03
Upf1Q9EPU0 Hoxa6-201ENSMUST00000062829 874 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
Upf1Q9EPU0 Cnp-201ENSMUST00000103120 2357 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
Upf1Q9EPU0 Ptpn4-203ENSMUST00000163435 2365 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
Upf1Q9EPU0 Psmd3-201ENSMUST00000017365 2148 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
Upf1Q9EPU0 Iscu-202ENSMUST00000112311 1395 ntTSL 2 BASIC21.48■■□□□ 1.03
Upf1Q9EPU0 Pgam5-201ENSMUST00000059229 2044 ntAPPRIS P3 TSL 1 (best) BASIC21.48■■□□□ 1.03
Upf1Q9EPU0 Scml4-203ENSMUST00000105495 1033 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
Upf1Q9EPU0 Gm18115-201ENSMUST00000221209 621 ntBASIC21.48■■□□□ 1.03
Upf1Q9EPU0 Fkbp11-201ENSMUST00000003445 731 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
Upf1Q9EPU0 St3gal2-202ENSMUST00000117534 2177 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
Upf1Q9EPU0 Nagk-203ENSMUST00000113851 1323 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
Upf1Q9EPU0 Setd4-202ENSMUST00000113951 1826 ntAPPRIS P1 TSL 5 BASIC21.48■■□□□ 1.03
Upf1Q9EPU0 Tsfm-202ENSMUST00000120547 1271 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
Upf1Q9EPU0 Mpv17l-205ENSMUST00000143697 580 ntTSL 2 BASIC21.47■■□□□ 1.03
Upf1Q9EPU0 Gm20422-202ENSMUST00000149782 956 ntTSL 2 BASIC21.47■■□□□ 1.03
Upf1Q9EPU0 Gm5587-201ENSMUST00000206270 674 ntBASIC21.47■■□□□ 1.03
Upf1Q9EPU0 Olfr718-ps1-204ENSMUST00000218872 963 ntAPPRIS ALT2 BASIC21.47■■□□□ 1.03
Upf1Q9EPU0 Coq7-201ENSMUST00000032887 914 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
Upf1Q9EPU0 Dars-202ENSMUST00000064309 645 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
Upf1Q9EPU0 Grm2-203ENSMUST00000201681 2111 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
Upf1Q9EPU0 Ntng1-204ENSMUST00000106571 1446 ntTSL 5 BASIC21.46■■□□□ 1.03
Upf1Q9EPU0 Ntng1-210ENSMUST00000138953 1443 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
Upf1Q9EPU0 Gm20387-201ENSMUST00000173609 1783 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
Upf1Q9EPU0 Efhd2-201ENSMUST00000036854 2381 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
Upf1Q9EPU0 Prkcz-203ENSMUST00000105624 694 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
Upf1Q9EPU0 Znhit2-201ENSMUST00000162726 1281 ntAPPRIS P1 BASIC21.46■■□□□ 1.03
Retrieved 100 of 76,532 protein–RNA pairs in 28.4 ms