Protein–RNA interactions for Protein: Q99MT2

Msh4, MutS protein homolog 4, mousemouse

Predictions only

Length 958 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msh4Q99MT2 Pcnp-202ENSMUST00000114444 2295 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Msh4Q99MT2 Reep4-203ENSMUST00000226563 1444 ntBASIC18.21■□□□□ 0.51
Msh4Q99MT2 Cpeb3-202ENSMUST00000123727 2411 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
Msh4Q99MT2 Krt87-201ENSMUST00000081945 1826 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Msh4Q99MT2 Hsd17b2-201ENSMUST00000034304 1320 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Msh4Q99MT2 Stoml1-201ENSMUST00000034883 1984 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.5
Msh4Q99MT2 Atp8b2-202ENSMUST00000107396 5705 ntAPPRIS ALT2 TSL 5 BASIC18.2■□□□□ 0.5
Msh4Q99MT2 Dynll2-204ENSMUST00000178105 2187 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Msh4Q99MT2 Gls2-201ENSMUST00000044776 2573 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Msh4Q99MT2 Kcng3-201ENSMUST00000051482 3356 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Msh4Q99MT2 Gm10849-201ENSMUST00000100397 618 ntBASIC18.2■□□□□ 0.5
Msh4Q99MT2 1810059C17Rik-201ENSMUST00000125173 487 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
Msh4Q99MT2 Gm15908-201ENSMUST00000154345 1091 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
Msh4Q99MT2 P4hb-203ENSMUST00000168360 770 ntTSL 3 BASIC18.2■□□□□ 0.5
Msh4Q99MT2 Neurl1b-203ENSMUST00000183077 1084 ntTSL 5 BASIC18.2■□□□□ 0.5
Msh4Q99MT2 Gm6916-201ENSMUST00000205277 828 ntTSL 3 BASIC18.2■□□□□ 0.5
Msh4Q99MT2 1700017B05Rik-204ENSMUST00000215298 1023 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
Msh4Q99MT2 Khk-204ENSMUST00000201621 1583 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Msh4Q99MT2 Aire-203ENSMUST00000105396 1749 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
Msh4Q99MT2 Pigt-202ENSMUST00000117066 1712 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
Msh4Q99MT2 Gm11762-201ENSMUST00000135630 1705 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
Msh4Q99MT2 Aire-214ENSMUST00000154374 1712 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
Msh4Q99MT2 Aire-215ENSMUST00000155021 1737 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
Msh4Q99MT2 Ppp2r1b-209ENSMUST00000176349 1890 ntAPPRIS ALT2 TSL 5 BASIC18.2■□□□□ 0.5
Msh4Q99MT2 Hoxa10-202ENSMUST00000125581 2565 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
Msh4Q99MT2 Nipa2-202ENSMUST00000117812 3039 ntAPPRIS P1 TSL 2 BASIC18.2■□□□□ 0.5
Msh4Q99MT2 5033417F24Rik-201ENSMUST00000181575 1787 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
Msh4Q99MT2 Tbkbp1-203ENSMUST00000107614 2391 ntAPPRIS ALT2 TSL 5 BASIC18.19■□□□□ 0.5
Msh4Q99MT2 Rcc1-202ENSMUST00000084250 2285 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Msh4Q99MT2 Snx4-201ENSMUST00000023502 2442 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Msh4Q99MT2 Prdm8-201ENSMUST00000112959 4553 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Msh4Q99MT2 AV026068-204ENSMUST00000186214 633 ntTSL 2 BASIC18.19■□□□□ 0.5
Msh4Q99MT2 Lrrc43-203ENSMUST00000196809 2031 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
Msh4Q99MT2 Gm18688-201ENSMUST00000204695 1859 ntBASIC18.19■□□□□ 0.5
Msh4Q99MT2 AC164629.5-201ENSMUST00000220387 632 ntBASIC18.19■□□□□ 0.5
Msh4Q99MT2 Mpp6-201ENSMUST00000036225 1896 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
Msh4Q99MT2 Eif2b4-212ENSMUST00000202758 1767 ntTSL 5 BASIC18.19■□□□□ 0.5
Msh4Q99MT2 Tmem44-204ENSMUST00000140402 2405 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Msh4Q99MT2 Trmt61a-201ENSMUST00000084947 2433 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Msh4Q99MT2 Wipi2-202ENSMUST00000110778 1959 ntAPPRIS P1 TSL 5 BASIC18.19■□□□□ 0.5
Msh4Q99MT2 2410004B18Rik-201ENSMUST00000039571 1547 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Msh4Q99MT2 Kmt5b-204ENSMUST00000113970 2975 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
Msh4Q99MT2 1810055G02Rik-201ENSMUST00000039048 1882 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Msh4Q99MT2 Sox10-201ENSMUST00000040019 2713 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Msh4Q99MT2 Blcap-202ENSMUST00000109528 2056 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Msh4Q99MT2 A930001C03Rik-204ENSMUST00000154407 1402 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
Msh4Q99MT2 Gm13234-201ENSMUST00000120010 747 ntBASIC18.18■□□□□ 0.5
Msh4Q99MT2 4930519P11Rik-201ENSMUST00000181369 501 ntAPPRIS P1 BASIC18.18■□□□□ 0.5
Msh4Q99MT2 Cck-203ENSMUST00000215228 783 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Msh4Q99MT2 CT030146.1-201ENSMUST00000220919 217 ntBASIC18.18■□□□□ 0.5
Msh4Q99MT2 Ltb-201ENSMUST00000025262 1160 ntAPPRIS P2 TSL 1 (best) BASIC18.18■□□□□ 0.5
Msh4Q99MT2 E130116L18Rik-201ENSMUST00000066954 306 ntAPPRIS P1 BASIC18.18■□□□□ 0.5
Msh4Q99MT2 Thoc3-201ENSMUST00000026990 2335 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Msh4Q99MT2 Sirt1-202ENSMUST00000105442 3740 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
Msh4Q99MT2 Cacna1a-202ENSMUST00000122053 7589 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
Msh4Q99MT2 Plekhm2-202ENSMUST00000084203 4136 ntAPPRIS P3 TSL 5 BASIC18.18■□□□□ 0.5
Msh4Q99MT2 Neurl1b-201ENSMUST00000053020 6195 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Msh4Q99MT2 Gm38342-201ENSMUST00000195710 2980 ntBASIC18.18■□□□□ 0.5
Msh4Q99MT2 Prkg2-201ENSMUST00000031277 2618 ntTSL 5 BASIC18.18■□□□□ 0.5
Msh4Q99MT2 AB041806-201ENSMUST00000062902 2105 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
Msh4Q99MT2 Papola-212ENSMUST00000168186 2436 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
Msh4Q99MT2 Gm7291-201ENSMUST00000199147 382 ntBASIC18.17■□□□□ 0.5
Msh4Q99MT2 AV356131-201ENSMUST00000206201 750 ntBASIC18.17■□□□□ 0.5
Msh4Q99MT2 B230217C12Rik-201ENSMUST00000054783 1189 ntAPPRIS P1 TSL 5 BASIC18.17■□□□□ 0.5
Msh4Q99MT2 Zfp771-201ENSMUST00000052509 1484 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Msh4Q99MT2 Map4k5-203ENSMUST00000110570 4498 ntAPPRIS P5 TSL 5 BASIC18.17■□□□□ 0.5
Msh4Q99MT2 Rfx7-201ENSMUST00000093820 7988 ntAPPRIS P1 TSL 5 BASIC18.17■□□□□ 0.5
Msh4Q99MT2 Mxi1-201ENSMUST00000003870 5156 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
Msh4Q99MT2 Ciapin1-201ENSMUST00000034233 1807 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
Msh4Q99MT2 Htr7-201ENSMUST00000099505 1606 ntTSL 5 BASIC18.16■□□□□ 0.5
Msh4Q99MT2 Syt3-203ENSMUST00000120262 2096 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
Msh4Q99MT2 Dlg3-204ENSMUST00000113736 4940 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
Msh4Q99MT2 Dhx36-201ENSMUST00000029336 5620 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Msh4Q99MT2 R3hdm4-201ENSMUST00000045628 1898 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Msh4Q99MT2 Shc2-201ENSMUST00000020564 3243 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
Msh4Q99MT2 6820408C15Rik-201ENSMUST00000039961 1684 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Msh4Q99MT2 Nin-203ENSMUST00000095666 7183 ntAPPRIS ALT2 TSL 5 BASIC18.16■□□□□ 0.5
Msh4Q99MT2 Gm37352-201ENSMUST00000193908 2181 ntBASIC18.16■□□□□ 0.5
Msh4Q99MT2 Tcp11-203ENSMUST00000114836 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
Msh4Q99MT2 Gm27405-201ENSMUST00000184201 112 ntBASIC18.16■□□□□ 0.5
Msh4Q99MT2 Dtnbp1-208ENSMUST00000222805 1231 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
Msh4Q99MT2 H2-Ab1-201ENSMUST00000040828 1211 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Msh4Q99MT2 Ttc39a-203ENSMUST00000106619 1778 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
Msh4Q99MT2 Acvr1b-201ENSMUST00000000544 4413 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Msh4Q99MT2 Cbln2-202ENSMUST00000122079 2549 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Msh4Q99MT2 Cd82-201ENSMUST00000028644 1824 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Msh4Q99MT2 Atf6b-201ENSMUST00000015605 2566 ntAPPRIS P2 TSL 1 (best) BASIC18.16■□□□□ 0.5
Msh4Q99MT2 Cacfd1-202ENSMUST00000114004 2194 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Msh4Q99MT2 Pllp-201ENSMUST00000034227 1926 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Msh4Q99MT2 Palm-202ENSMUST00000105379 2519 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Msh4Q99MT2 Rgs19-202ENSMUST00000108769 1460 ntTSL 2 BASIC18.15■□□□□ 0.5
Msh4Q99MT2 Clint1-202ENSMUST00000109261 3365 ntAPPRIS ALT2 TSL 5 BASIC18.15■□□□□ 0.5
Msh4Q99MT2 Gse1-202ENSMUST00000118136 4492 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
Msh4Q99MT2 Mfhas1-201ENSMUST00000037666 6408 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Msh4Q99MT2 Smap2-201ENSMUST00000043200 2905 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Msh4Q99MT2 Fxr2-201ENSMUST00000018909 2951 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Msh4Q99MT2 Rab6b-202ENSMUST00000189134 716 ntTSL 3 BASIC18.15■□□□□ 0.5
Msh4Q99MT2 6430500D05Rik-201ENSMUST00000198286 1176 ntBASIC18.15■□□□□ 0.5
Msh4Q99MT2 Tmem185a-201ENSMUST00000101506 2429 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Msh4Q99MT2 Itsn1-206ENSMUST00000113999 5393 ntTSL 5 BASIC18.15■□□□□ 0.5
Retrieved 100 of 76,532 protein–RNA pairs in 25.6 ms