Protein–RNA interactions for Protein: Q8VC85

Lsm1, U6 snRNA-associated Sm-like protein LSm1, mousemouse

Predictions only

Length 133 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lsm1Q8VC85 Psmd3-201ENSMUST00000017365 2148 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Lsm1Q8VC85 Camkk2-202ENSMUST00000196742 1084 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
Lsm1Q8VC85 Myadml2-201ENSMUST00000026134 931 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Lsm1Q8VC85 Trnau1ap-201ENSMUST00000030730 1130 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Lsm1Q8VC85 Mprip-201ENSMUST00000066330 7765 ntAPPRIS ALT2 TSL 5 BASIC17.97■□□□□ 0.47
Lsm1Q8VC85 Tmem62-201ENSMUST00000067582 2921 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Lsm1Q8VC85 Gm5577-201ENSMUST00000134600 1434 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
Lsm1Q8VC85 Sept4-206ENSMUST00000122067 1303 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
Lsm1Q8VC85 Bhlhe22-201ENSMUST00000026120 3344 ntAPPRIS P1 BASIC17.97■□□□□ 0.47
Lsm1Q8VC85 Podxl-201ENSMUST00000026698 5379 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Lsm1Q8VC85 Klhdc9-201ENSMUST00000061878 1558 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Lsm1Q8VC85 Nabp2-202ENSMUST00000164199 1371 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Lsm1Q8VC85 Ubr5-201ENSMUST00000110336 9242 ntTSL 5 BASIC17.96■□□□□ 0.47
Lsm1Q8VC85 Gabra4-205ENSMUST00000199357 2407 ntAPPRIS ALT2 TSL 1 (best) BASIC17.96■□□□□ 0.47
Lsm1Q8VC85 Ap4s1-201ENSMUST00000021338 1035 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Lsm1Q8VC85 Zfp36l1-204ENSMUST00000219642 545 ntTSL 3 BASIC17.96■□□□□ 0.47
Lsm1Q8VC85 Sdf2l1-201ENSMUST00000023453 1108 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Lsm1Q8VC85 Cyp4f16-201ENSMUST00000003416 2227 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Lsm1Q8VC85 Krcc1-203ENSMUST00000204436 1687 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Lsm1Q8VC85 Prmt9-201ENSMUST00000056237 2781 ntAPPRIS P2 TSL 1 (best) BASIC17.96■□□□□ 0.46
Lsm1Q8VC85 B4galt4-205ENSMUST00000114712 2168 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.46
Lsm1Q8VC85 1700003E16Rik-202ENSMUST00000203203 2070 ntTSL 2 BASIC17.95■□□□□ 0.46
Lsm1Q8VC85 Hbs1l-202ENSMUST00000061324 1998 ntTSL 3 BASIC17.95■□□□□ 0.46
Lsm1Q8VC85 Chst7-201ENSMUST00000044138 2206 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Lsm1Q8VC85 Klhl2-201ENSMUST00000034017 3412 ntAPPRIS P2 TSL 1 (best) BASIC17.95■□□□□ 0.46
Lsm1Q8VC85 Chrac1-202ENSMUST00000134353 538 ntAPPRIS ALT2 TSL 2 BASIC17.95■□□□□ 0.46
Lsm1Q8VC85 Psmg4-202ENSMUST00000147632 555 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Lsm1Q8VC85 Spaca1-201ENSMUST00000029927 1197 ntAPPRIS P3 TSL 1 (best) BASIC17.95■□□□□ 0.46
Lsm1Q8VC85 Zfp428-201ENSMUST00000071361 1182 ntAPPRIS P3 TSL 1 (best) BASIC17.95■□□□□ 0.46
Lsm1Q8VC85 Spaca1-202ENSMUST00000084734 1149 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
Lsm1Q8VC85 Magi2-203ENSMUST00000115267 4478 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
Lsm1Q8VC85 Fam71b-201ENSMUST00000063166 2185 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Lsm1Q8VC85 Tmem164-201ENSMUST00000087333 5149 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Lsm1Q8VC85 M5C1000I18Rik-202ENSMUST00000186205 1414 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
Lsm1Q8VC85 Wbp1-201ENSMUST00000032111 1419 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
Lsm1Q8VC85 Fbxo44-201ENSMUST00000057907 1829 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Lsm1Q8VC85 Gpr137-203ENSMUST00000099776 1569 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
Lsm1Q8VC85 Lhfp-201ENSMUST00000059562 2108 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Lsm1Q8VC85 Shisa7-203ENSMUST00000119433 3481 ntAPPRIS P2 TSL 1 (best) BASIC17.95■□□□□ 0.46
Lsm1Q8VC85 Capzb-204ENSMUST00000102508 1674 ntAPPRIS ALT1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Lsm1Q8VC85 Nsmf-204ENSMUST00000102931 2830 ntTSL 5 BASIC17.94■□□□□ 0.46
Lsm1Q8VC85 Tusc3-202ENSMUST00000169034 1262 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
Lsm1Q8VC85 Sox8-202ENSMUST00000173447 928 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
Lsm1Q8VC85 Gm26833-201ENSMUST00000180899 440 ntBASIC17.94■□□□□ 0.46
Lsm1Q8VC85 Gm45417-201ENSMUST00000209533 758 ntBASIC17.94■□□□□ 0.46
Lsm1Q8VC85 Gm40848-201ENSMUST00000221998 324 ntBASIC17.94■□□□□ 0.46
Lsm1Q8VC85 Rbp4-201ENSMUST00000025951 1243 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
Lsm1Q8VC85 Cisd1-201ENSMUST00000045887 1084 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Lsm1Q8VC85 Dennd3-201ENSMUST00000043414 5299 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Lsm1Q8VC85 Sec61a2-202ENSMUST00000102981 2448 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Lsm1Q8VC85 Foxj1-201ENSMUST00000036215 2623 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Lsm1Q8VC85 Gm26798-201ENSMUST00000181384 2837 ntTSL 5 BASIC17.94■□□□□ 0.46
Lsm1Q8VC85 Zc3hav1l-201ENSMUST00000058524 6536 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Lsm1Q8VC85 Echs1-201ENSMUST00000026538 1557 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Lsm1Q8VC85 Lhx1-204ENSMUST00000184646 1201 ntTSL 5 BASIC17.93■□□□□ 0.46
Lsm1Q8VC85 Rtn4rl2-201ENSMUST00000054514 1263 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Lsm1Q8VC85 Maff-201ENSMUST00000096350 1933 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Lsm1Q8VC85 Fam129b-201ENSMUST00000028135 3714 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Lsm1Q8VC85 Mgme1-203ENSMUST00000110028 2308 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Lsm1Q8VC85 AU019823-202ENSMUST00000145139 2805 ntTSL 2 BASIC17.93■□□□□ 0.46
Lsm1Q8VC85 Cdan1-202ENSMUST00000110701 6384 ntAPPRIS P2 TSL 5 BASIC17.93■□□□□ 0.46
Lsm1Q8VC85 Lrrc43-201ENSMUST00000094327 2046 ntAPPRIS P3 TSL 1 (best) BASIC17.93■□□□□ 0.46
Lsm1Q8VC85 Mfsd6-205ENSMUST00000156876 4932 ntAPPRIS P4 TSL 5 BASIC17.93■□□□□ 0.46
Lsm1Q8VC85 Mzt1-201ENSMUST00000042662 2240 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Lsm1Q8VC85 Mid1-203ENSMUST00000079443 2815 ntTSL 5 BASIC17.92■□□□□ 0.46
Lsm1Q8VC85 Dolk-201ENSMUST00000100219 2104 ntAPPRIS P1 BASIC17.92■□□□□ 0.46
Lsm1Q8VC85 Ankle1-201ENSMUST00000119976 2136 ntAPPRIS P3 TSL 1 (best) BASIC17.92■□□□□ 0.46
Lsm1Q8VC85 Blcap-201ENSMUST00000088494 2108 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Lsm1Q8VC85 Fam189a1-201ENSMUST00000119118 4801 ntAPPRIS P1 TSL 5 BASIC17.92■□□□□ 0.46
Lsm1Q8VC85 Espn-205ENSMUST00000084114 1645 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
Lsm1Q8VC85 Cmc4-201ENSMUST00000033543 992 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Lsm1Q8VC85 Naa30-205ENSMUST00000153488 4446 ntAPPRIS P2 TSL 1 (best) BASIC17.92■□□□□ 0.46
Lsm1Q8VC85 P2rx4-202ENSMUST00000081554 1887 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
Lsm1Q8VC85 0610038B21Rik-202ENSMUST00000184762 1524 ntBASIC17.92■□□□□ 0.46
Lsm1Q8VC85 6030445D17Rik-201ENSMUST00000084593 1728 ntAPPRIS P1 BASIC17.92■□□□□ 0.46
Lsm1Q8VC85 Dstn-201ENSMUST00000103172 1911 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Lsm1Q8VC85 Dpys-202ENSMUST00000110306 2110 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Lsm1Q8VC85 Ppp3ca-201ENSMUST00000056758 2194 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Lsm1Q8VC85 Tmem39b-201ENSMUST00000102588 1810 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Lsm1Q8VC85 Hpn-202ENSMUST00000108102 1830 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
Lsm1Q8VC85 Arfrp1-209ENSMUST00000170190 2483 ntTSL 5 BASIC17.91■□□□□ 0.46
Lsm1Q8VC85 Cdkl3-207ENSMUST00000109080 2749 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
Lsm1Q8VC85 Ssc4d-203ENSMUST00000111152 2745 ntAPPRIS P1 TSL 5 BASIC17.91■□□□□ 0.46
Lsm1Q8VC85 Cyth2-202ENSMUST00000107729 2519 ntAPPRIS P2 TSL 1 (best) BASIC17.91■□□□□ 0.46
Lsm1Q8VC85 2200002D01Rik-201ENSMUST00000032808 1466 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Lsm1Q8VC85 Cdh4-203ENSMUST00000108911 1208 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
Lsm1Q8VC85 Gm27032-201ENSMUST00000183124 1116 ntBASIC17.91■□□□□ 0.46
Lsm1Q8VC85 Prmt1-210ENSMUST00000208829 621 ntTSL 5 BASIC17.91■□□□□ 0.46
Lsm1Q8VC85 AC114678.1-201ENSMUST00000219640 622 ntTSL 3 BASIC17.91■□□□□ 0.46
Lsm1Q8VC85 Grk6-206ENSMUST00000224995 2971 ntBASIC17.91■□□□□ 0.46
Lsm1Q8VC85 Cdo1-201ENSMUST00000035804 1530 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Lsm1Q8VC85 Sirt1-202ENSMUST00000105442 3740 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
Lsm1Q8VC85 Tmem121b-201ENSMUST00000178687 4869 ntAPPRIS P1 BASIC17.91■□□□□ 0.46
Lsm1Q8VC85 4930560O18Rik-201ENSMUST00000207051 1595 ntBASIC17.91■□□□□ 0.46
Lsm1Q8VC85 Map6-206ENSMUST00000208605 2275 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
Lsm1Q8VC85 Atrn-201ENSMUST00000028781 8745 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Lsm1Q8VC85 Pigw-201ENSMUST00000067058 2675 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Lsm1Q8VC85 Tcf7-202ENSMUST00000109071 1742 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Lsm1Q8VC85 Gcgr-201ENSMUST00000026119 1957 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Lsm1Q8VC85 Snx16-202ENSMUST00000099223 2512 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
Retrieved 100 of 76,532 protein–RNA pairs in 45.3 ms