Protein–RNA interactions for Protein: Q8CEI3

Ccdc28a, Coiled-coil domain-containing 28A, mousemouse

Predictions only

Length 192 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc28aQ8CEI3 Tmem196-202ENSMUST00000183694 845 ntTSL 3 BASIC19.76■□□□□ 0.75
Ccdc28aQ8CEI3 Smco4-203ENSMUST00000215907 994 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Ccdc28aQ8CEI3 Spcs1-204ENSMUST00000226782 949 ntBASIC19.76■□□□□ 0.75
Ccdc28aQ8CEI3 Usp36-202ENSMUST00000106296 5655 ntAPPRIS P1 TSL 5 BASIC19.76■□□□□ 0.75
Ccdc28aQ8CEI3 Mid1-203ENSMUST00000079443 2815 ntTSL 5 BASIC19.76■□□□□ 0.75
Ccdc28aQ8CEI3 Mgme1-203ENSMUST00000110028 2308 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Ccdc28aQ8CEI3 Runx2-204ENSMUST00000159943 2316 ntAPPRIS P3 TSL 1 (best) BASIC19.76■□□□□ 0.75
Ccdc28aQ8CEI3 Adgrl1-207ENSMUST00000141158 8181 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
Ccdc28aQ8CEI3 Hoxa11os-201ENSMUST00000134512 1839 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
Ccdc28aQ8CEI3 Gls-204ENSMUST00000114513 4966 ntAPPRIS P3 TSL 5 BASIC19.76■□□□□ 0.75
Ccdc28aQ8CEI3 Nsmf-205ENSMUST00000114386 2685 ntTSL 5 BASIC19.76■□□□□ 0.75
Ccdc28aQ8CEI3 Cdk19-201ENSMUST00000044672 5807 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Ccdc28aQ8CEI3 Paip2-203ENSMUST00000115735 1521 ntAPPRIS P1 TSL 5 BASIC19.76■□□□□ 0.75
Ccdc28aQ8CEI3 Kdelr3-201ENSMUST00000010974 1414 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Ccdc28aQ8CEI3 Ppp1r3g-203ENSMUST00000225537 2389 ntAPPRIS P1 BASIC19.76■□□□□ 0.75
Ccdc28aQ8CEI3 Gm10300-201ENSMUST00000094662 2296 ntAPPRIS P1 BASIC19.76■□□□□ 0.75
Ccdc28aQ8CEI3 Anks6-202ENSMUST00000107747 3980 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
Ccdc28aQ8CEI3 Osbpl1a-203ENSMUST00000118313 2893 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
Ccdc28aQ8CEI3 Lrfn1-201ENSMUST00000055110 1479 ntAPPRIS P3 TSL 5 BASIC19.75■□□□□ 0.75
Ccdc28aQ8CEI3 Gm7160-202ENSMUST00000188519 1027 ntBASIC19.75■□□□□ 0.75
Ccdc28aQ8CEI3 Ostc-201ENSMUST00000043937 1067 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Ccdc28aQ8CEI3 Prkci-201ENSMUST00000108249 4708 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Ccdc28aQ8CEI3 Ero1l-201ENSMUST00000022378 4418 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Ccdc28aQ8CEI3 Ripply3-201ENSMUST00000023660 1531 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Ccdc28aQ8CEI3 Dxo-201ENSMUST00000046244 1519 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Ccdc28aQ8CEI3 Creld1-201ENSMUST00000032422 2306 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Ccdc28aQ8CEI3 Kcnk1-202ENSMUST00000212831 1309 ntTSL 5 BASIC19.75■□□□□ 0.75
Ccdc28aQ8CEI3 Twist2-201ENSMUST00000007949 1329 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Ccdc28aQ8CEI3 Csnk1e-203ENSMUST00000122044 3174 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
Ccdc28aQ8CEI3 3830408C21Rik-206ENSMUST00000225489 1810 ntBASIC19.74■□□□□ 0.75
Ccdc28aQ8CEI3 Sec61a2-202ENSMUST00000102981 2448 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Ccdc28aQ8CEI3 Disc1-204ENSMUST00000115885 2408 ntAPPRIS ALT2 TSL 5 BASIC19.74■□□□□ 0.75
Ccdc28aQ8CEI3 Disc1-202ENSMUST00000075730 2408 ntAPPRIS P3 TSL 5 BASIC19.74■□□□□ 0.75
Ccdc28aQ8CEI3 Tgif1-209ENSMUST00000166395 1714 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
Ccdc28aQ8CEI3 Gab1-202ENSMUST00000210676 4985 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
Ccdc28aQ8CEI3 5330438D12Rik-201ENSMUST00000064101 2229 ntBASIC19.74■□□□□ 0.75
Ccdc28aQ8CEI3 Slc10a4-201ENSMUST00000031127 2106 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Ccdc28aQ8CEI3 Lca5l-201ENSMUST00000054855 2508 ntAPPRIS P2 TSL 1 (best) BASIC19.74■□□□□ 0.75
Ccdc28aQ8CEI3 Gm3020-202ENSMUST00000167430 1933 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Ccdc28aQ8CEI3 Gm10409-201ENSMUST00000170123 1933 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Ccdc28aQ8CEI3 Zfp78-205ENSMUST00000208030 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
Ccdc28aQ8CEI3 Map4k4-202ENSMUST00000168431 5632 ntAPPRIS ALT2 TSL 5 BASIC19.74■□□□□ 0.75
Ccdc28aQ8CEI3 Ptgfrn-201ENSMUST00000102694 5902 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Ccdc28aQ8CEI3 Foxj1-201ENSMUST00000036215 2623 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Ccdc28aQ8CEI3 Asap2-204ENSMUST00000101562 5552 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
Ccdc28aQ8CEI3 Rarb-207ENSMUST00000225921 2756 ntBASIC19.73■□□□□ 0.75
Ccdc28aQ8CEI3 Krcc1-203ENSMUST00000204436 1687 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Ccdc28aQ8CEI3 Snap91-201ENSMUST00000036347 4237 ntAPPRIS ALT2 TSL 5 BASIC19.73■□□□□ 0.75
Ccdc28aQ8CEI3 Hpn-202ENSMUST00000108102 1830 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
Ccdc28aQ8CEI3 Acot7-201ENSMUST00000030779 1425 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
Ccdc28aQ8CEI3 Agmat-201ENSMUST00000038161 1407 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Ccdc28aQ8CEI3 Adgrv1-211ENSMUST00000146749 1592 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
Ccdc28aQ8CEI3 Tagln-201ENSMUST00000034590 1595 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Ccdc28aQ8CEI3 Wtap-205ENSMUST00000160781 2442 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
Ccdc28aQ8CEI3 B430218F22Rik-201ENSMUST00000181168 1495 ntAPPRIS P1 BASIC19.73■□□□□ 0.75
Ccdc28aQ8CEI3 Rxra-201ENSMUST00000077257 4905 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Ccdc28aQ8CEI3 Schip1-201ENSMUST00000029346 2201 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
Ccdc28aQ8CEI3 Cyth2-202ENSMUST00000107729 2519 ntAPPRIS P2 TSL 1 (best) BASIC19.72■□□□□ 0.75
Ccdc28aQ8CEI3 Sigmar1-202ENSMUST00000071561 1547 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
Ccdc28aQ8CEI3 Gm26689-201ENSMUST00000180927 1818 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
Ccdc28aQ8CEI3 Gm26553-201ENSMUST00000181531 1818 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
Ccdc28aQ8CEI3 Cdca4-201ENSMUST00000062092 2425 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Ccdc28aQ8CEI3 Pip5k1c-202ENSMUST00000105327 2551 ntAPPRIS P3 TSL 1 (best) BASIC19.72■□□□□ 0.75
Ccdc28aQ8CEI3 H3f3a-207ENSMUST00000162814 724 ntAPPRIS P2 TSL 3 BASIC19.72■□□□□ 0.75
Ccdc28aQ8CEI3 4930519A11Rik-202ENSMUST00000221053 667 ntTSL 3 BASIC19.72■□□□□ 0.75
Ccdc28aQ8CEI3 Sox30-201ENSMUST00000049038 2997 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Ccdc28aQ8CEI3 Slc30a4-202ENSMUST00000099457 3170 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
Ccdc28aQ8CEI3 Krtap5-2-202ENSMUST00000190456 1471 ntAPPRIS P2 BASIC19.72■□□□□ 0.75
Ccdc28aQ8CEI3 Rdh14-201ENSMUST00000020947 1480 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Ccdc28aQ8CEI3 Cckbr-201ENSMUST00000033189 2573 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Ccdc28aQ8CEI3 Ube2d-ps-204ENSMUST00000137510 1846 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
Ccdc28aQ8CEI3 Tyw5-209ENSMUST00000162686 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Ccdc28aQ8CEI3 Khdc3-201ENSMUST00000034737 1681 ntAPPRIS P3 TSL 1 (best) BASIC19.71■□□□□ 0.75
Ccdc28aQ8CEI3 Larp1-201ENSMUST00000071487 6614 ntAPPRIS ALT2 TSL 5 BASIC19.71■□□□□ 0.75
Ccdc28aQ8CEI3 Laptm4b-201ENSMUST00000022867 1902 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Ccdc28aQ8CEI3 Faxc-201ENSMUST00000029908 2627 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Ccdc28aQ8CEI3 Scrib-203ENSMUST00000109946 5545 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
Ccdc28aQ8CEI3 N4bp2os-203ENSMUST00000202673 699 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
Ccdc28aQ8CEI3 Aldoa-ps3-201ENSMUST00000217558 306 ntBASIC19.71■□□□□ 0.75
Ccdc28aQ8CEI3 Bcl2l10-201ENSMUST00000034709 1220 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Ccdc28aQ8CEI3 Rras-201ENSMUST00000044111 995 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Ccdc28aQ8CEI3 Hoxb7-201ENSMUST00000049352 1291 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Ccdc28aQ8CEI3 Spata33-201ENSMUST00000060133 491 ntAPPRIS P2 TSL 1 (best) BASIC19.71■□□□□ 0.75
Ccdc28aQ8CEI3 Anks1b-208ENSMUST00000182053 1649 ntTSL 5 BASIC19.71■□□□□ 0.75
Ccdc28aQ8CEI3 Hoxd4-202ENSMUST00000111980 1494 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Ccdc28aQ8CEI3 Man1c1-201ENSMUST00000038628 4285 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Ccdc28aQ8CEI3 Sobp-201ENSMUST00000040275 4980 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Ccdc28aQ8CEI3 Lrrc58-201ENSMUST00000078717 8604 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Ccdc28aQ8CEI3 Icmt-201ENSMUST00000048892 4919 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Ccdc28aQ8CEI3 D11Wsu47e-202ENSMUST00000106621 2062 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Ccdc28aQ8CEI3 Spint2-201ENSMUST00000098604 1384 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Ccdc28aQ8CEI3 AC122335.2-201ENSMUST00000213901 6181 ntBASIC19.7■□□□□ 0.74
Ccdc28aQ8CEI3 Kmt5b-216ENSMUST00000176926 1551 ntAPPRIS ALT2 TSL 5 BASIC19.7■□□□□ 0.74
Ccdc28aQ8CEI3 Ccdc102a-201ENSMUST00000077955 2304 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Ccdc28aQ8CEI3 Dleu2-203ENSMUST00000182259 1437 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
Ccdc28aQ8CEI3 Vps9d1-203ENSMUST00000122363 2952 ntAPPRIS P3 TSL 1 (best) BASIC19.7■□□□□ 0.74
Ccdc28aQ8CEI3 Tada2b-201ENSMUST00000031097 3791 ntAPPRIS P1 TSL 2 BASIC19.7■□□□□ 0.74
Ccdc28aQ8CEI3 0610010K14Rik-209ENSMUST00000108579 667 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
Ccdc28aQ8CEI3 2810001G20Rik-202ENSMUST00000146333 959 ntTSL 3 BASIC19.7■□□□□ 0.74
Ccdc28aQ8CEI3 Fbxo2-201ENSMUST00000047951 1288 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Retrieved 100 of 76,532 protein–RNA pairs in 23.6 ms