Protein–RNA interactions for Protein: Q6Q899

Ddx58, Probable ATP-dependent RNA helicase DDX58, mousemouse

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx58Q6Q899 Esx1-201ENSMUST00000074698 1600 ntAPPRIS P2 TSL 1 (best) BASIC23.3■■□□□ 1.32
Ddx58Q6Q899 Wdr37-203ENSMUST00000164183 1780 ntTSL 1 (best) BASIC23.29■■□□□ 1.32
Ddx58Q6Q899 Nup153-201ENSMUST00000021803 6109 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
Ddx58Q6Q899 Nnat-210ENSMUST00000173839 1135 ntTSL 1 (best) BASIC23.29■■□□□ 1.32
Ddx58Q6Q899 2810405F15Rik-201ENSMUST00000195368 932 ntBASIC23.29■■□□□ 1.32
Ddx58Q6Q899 AC160393.1-201ENSMUST00000218378 1279 ntBASIC23.29■■□□□ 1.32
Ddx58Q6Q899 Prmt9-201ENSMUST00000056237 2781 ntAPPRIS P2 TSL 1 (best) BASIC23.29■■□□□ 1.32
Ddx58Q6Q899 Gabra5-201ENSMUST00000068456 2671 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
Ddx58Q6Q899 Rprm-201ENSMUST00000100089 1460 ntAPPRIS P1 BASIC23.29■■□□□ 1.32
Ddx58Q6Q899 Suz12-201ENSMUST00000017692 4373 ntAPPRIS P3 TSL 1 (best) BASIC23.29■■□□□ 1.32
Ddx58Q6Q899 Ndel1-203ENSMUST00000108672 1653 ntTSL 1 (best) BASIC23.28■■□□□ 1.32
Ddx58Q6Q899 Oxct2a-201ENSMUST00000102640 1760 ntAPPRIS P1 BASIC23.28■■□□□ 1.32
Ddx58Q6Q899 Eif2b4-212ENSMUST00000202758 1767 ntTSL 5 BASIC23.28■■□□□ 1.32
Ddx58Q6Q899 Iglon5-201ENSMUST00000107974 2622 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
Ddx58Q6Q899 Zfp629-207ENSMUST00000134446 670 ntTSL 1 (best) BASIC23.28■■□□□ 1.32
Ddx58Q6Q899 Gm16141-201ENSMUST00000152073 790 ntTSL 1 (best) BASIC23.28■■□□□ 1.32
Ddx58Q6Q899 1700101I19Rik-202ENSMUST00000186712 510 ntBASIC23.28■■□□□ 1.32
Ddx58Q6Q899 AC135637.1-201ENSMUST00000227750 365 ntBASIC23.28■■□□□ 1.32
Ddx58Q6Q899 Six5-201ENSMUST00000049454 3007 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
Ddx58Q6Q899 Syncrip-201ENSMUST00000069221 9450 ntAPPRIS P3 TSL 1 (best) BASIC23.28■■□□□ 1.32
Ddx58Q6Q899 Sept7-201ENSMUST00000115272 2533 ntAPPRIS ALT1 TSL 5 BASIC23.28■■□□□ 1.32
Ddx58Q6Q899 Cbfb-201ENSMUST00000052209 2883 ntAPPRIS P3 TSL 1 (best) BASIC23.28■■□□□ 1.32
Ddx58Q6Q899 Zfp821-206ENSMUST00000212964 2033 ntTSL 1 (best) BASIC23.28■■□□□ 1.32
Ddx58Q6Q899 Impdh2-201ENSMUST00000081111 1858 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
Ddx58Q6Q899 Sigmar1-202ENSMUST00000071561 1547 ntTSL 1 (best) BASIC23.28■■□□□ 1.32
Ddx58Q6Q899 Smad6-201ENSMUST00000041029 2971 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
Ddx58Q6Q899 Kalrn-208ENSMUST00000114961 6128 ntTSL 5 BASIC23.27■■□□□ 1.32
Ddx58Q6Q899 Pcmtd1-201ENSMUST00000061280 5232 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
Ddx58Q6Q899 Nfe2-210ENSMUST00000156927 1608 ntAPPRIS P1 TSL 5 BASIC23.27■■□□□ 1.32
Ddx58Q6Q899 Cln5-201ENSMUST00000022721 2445 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
Ddx58Q6Q899 Naxe-201ENSMUST00000029708 908 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
Ddx58Q6Q899 Rps16-201ENSMUST00000082134 1109 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
Ddx58Q6Q899 Cox18-201ENSMUST00000048363 1333 ntAPPRIS P3 TSL 1 (best) BASIC23.27■■□□□ 1.32
Ddx58Q6Q899 Kansl1-204ENSMUST00000106972 5427 ntAPPRIS ALT2 TSL 5 BASIC23.27■■□□□ 1.32
Ddx58Q6Q899 Neto2-205ENSMUST00000216286 2932 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
Ddx58Q6Q899 Bag5-201ENSMUST00000054636 2139 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
Ddx58Q6Q899 Inpp5a-203ENSMUST00000106098 2826 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
Ddx58Q6Q899 Hmgn2-204ENSMUST00000105893 973 ntTSL 3 BASIC23.26■■□□□ 1.31
Ddx58Q6Q899 AA465934-203ENSMUST00000177150 383 ntTSL 1 (best) BASIC23.26■■□□□ 1.31
Ddx58Q6Q899 Mbip-201ENSMUST00000021416 1512 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
Ddx58Q6Q899 Picalm-215ENSMUST00000209068 3511 ntAPPRIS ALT2 TSL 5 BASIC23.26■■□□□ 1.31
Ddx58Q6Q899 Nkd1-203ENSMUST00000211113 1474 ntTSL 5 BASIC23.25■■□□□ 1.31
Ddx58Q6Q899 Galnt16-204ENSMUST00000218943 2047 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
Ddx58Q6Q899 Spc25-202ENSMUST00000112320 1527 ntAPPRIS ALT2 TSL 1 (best) BASIC23.25■■□□□ 1.31
Ddx58Q6Q899 Mprip-204ENSMUST00000116371 8766 ntAPPRIS ALT2 TSL 1 (best) BASIC23.25■■□□□ 1.31
Ddx58Q6Q899 Bnip1-201ENSMUST00000015725 1085 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
Ddx58Q6Q899 Gm8520-201ENSMUST00000186517 868 ntBASIC23.25■■□□□ 1.31
Ddx58Q6Q899 Gm45822-201ENSMUST00000212231 259 ntTSL 3 BASIC23.25■■□□□ 1.31
Ddx58Q6Q899 Ttc32-202ENSMUST00000219470 1645 ntTSL 1 (best) BASIC23.25■■□□□ 1.31
Ddx58Q6Q899 Myd88-201ENSMUST00000035092 1960 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
Ddx58Q6Q899 Sncb-201ENSMUST00000036825 1351 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
Ddx58Q6Q899 B4gat1-201ENSMUST00000053705 2035 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
Ddx58Q6Q899 Cpne7-201ENSMUST00000037900 2398 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
Ddx58Q6Q899 Zbtb7c-202ENSMUST00000167921 2147 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
Ddx58Q6Q899 Gm26837-201ENSMUST00000180821 2110 ntTSL 5 BASIC23.24■■□□□ 1.31
Ddx58Q6Q899 3830408C21Rik-206ENSMUST00000225489 1810 ntBASIC23.24■■□□□ 1.31
Ddx58Q6Q899 Smox-209ENSMUST00000110189 1919 ntTSL 1 (best) BASIC23.24■■□□□ 1.31
Ddx58Q6Q899 Csnk1a1-210ENSMUST00000170862 2259 ntAPPRIS ALT1 TSL 5 BASIC23.24■■□□□ 1.31
Ddx58Q6Q899 Angptl6-201ENSMUST00000043726 1582 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
Ddx58Q6Q899 Rapgefl1-202ENSMUST00000107479 4855 ntAPPRIS P1 TSL 5 BASIC23.24■■□□□ 1.31
Ddx58Q6Q899 Trmt13-210ENSMUST00000198454 880 ntBASIC23.24■■□□□ 1.31
Ddx58Q6Q899 AC061963.1-203ENSMUST00000213473 453 ntTSL 3 BASIC23.24■■□□□ 1.31
Ddx58Q6Q899 Znrf4-201ENSMUST00000052211 1236 ntAPPRIS P1 BASIC23.24■■□□□ 1.31
Ddx58Q6Q899 Lgr4-201ENSMUST00000046548 5060 ntAPPRIS P1 TSL 2 BASIC23.24■■□□□ 1.31
Ddx58Q6Q899 Ppp2r5a-201ENSMUST00000067976 3088 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
Ddx58Q6Q899 Maz-203ENSMUST00000205568 2650 ntAPPRIS P1 TSL 5 BASIC23.23■■□□□ 1.31
Ddx58Q6Q899 Rpl27-202ENSMUST00000107249 732 ntAPPRIS P1 TSL 2 BASIC23.23■■□□□ 1.31
Ddx58Q6Q899 Gm44549-201ENSMUST00000208351 577 ntBASIC23.23■■□□□ 1.31
Ddx58Q6Q899 Meis3-205ENSMUST00000176506 1839 ntTSL 1 (best) BASIC23.23■■□□□ 1.31
Ddx58Q6Q899 Lbp-202ENSMUST00000109491 1322 ntTSL 2 BASIC23.23■■□□□ 1.31
Ddx58Q6Q899 Strn3-201ENSMUST00000013130 3046 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
Ddx58Q6Q899 1700028E10Rik-201ENSMUST00000181114 2034 ntTSL 1 (best) BASIC23.23■■□□□ 1.31
Ddx58Q6Q899 Rapgef1-201ENSMUST00000091146 6212 ntAPPRIS ALT2 TSL 1 (best) BASIC23.23■■□□□ 1.31
Ddx58Q6Q899 Fcmr-201ENSMUST00000038829 1600 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
Ddx58Q6Q899 Man2c1os-201ENSMUST00000125333 1910 ntTSL 1 (best) BASIC23.22■■□□□ 1.31
Ddx58Q6Q899 Trim72-202ENSMUST00000106248 2134 ntAPPRIS P1 TSL 5 BASIC23.22■■□□□ 1.31
Ddx58Q6Q899 Gm6270-201ENSMUST00000132731 559 ntTSL 5 BASIC23.22■■□□□ 1.31
Ddx58Q6Q899 Alcam-206ENSMUST00000168071 878 ntTSL 1 (best) BASIC23.22■■□□□ 1.31
Ddx58Q6Q899 Stard6-203ENSMUST00000168249 1167 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
Ddx58Q6Q899 Cracr2b-207ENSMUST00000170879 1158 ntAPPRIS ALT2 TSL 5 BASIC23.22■■□□□ 1.31
Ddx58Q6Q899 Mrps10-201ENSMUST00000060752 1109 ntTSL 5 BASIC23.22■■□□□ 1.31
Ddx58Q6Q899 Lgals7-201ENSMUST00000081457 754 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
Ddx58Q6Q899 Klk9-201ENSMUST00000005891 1476 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
Ddx58Q6Q899 Grsf1-201ENSMUST00000078945 2538 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
Ddx58Q6Q899 Txndc15-201ENSMUST00000021959 1527 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
Ddx58Q6Q899 Slc12a2-201ENSMUST00000115366 6520 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
Ddx58Q6Q899 Hcn4-201ENSMUST00000034889 6118 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
Ddx58Q6Q899 Notumos-201ENSMUST00000151998 2659 ntBASIC23.21■■□□□ 1.31
Ddx58Q6Q899 Gm12896-201ENSMUST00000118430 226 ntBASIC23.21■■□□□ 1.31
Ddx58Q6Q899 Zfp560-202ENSMUST00000143992 608 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
Ddx58Q6Q899 Snx12-204ENSMUST00000156473 1114 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
Ddx58Q6Q899 Gm20390-201ENSMUST00000170303 991 ntAPPRIS P1 TSL 5 BASIC23.21■■□□□ 1.31
Ddx58Q6Q899 Gm22240-201ENSMUST00000175225 82 ntBASIC23.21■■□□□ 1.31
Ddx58Q6Q899 Gm44878-201ENSMUST00000205812 1295 ntBASIC23.21■■□□□ 1.31
Ddx58Q6Q899 Tnnt2-201ENSMUST00000027671 1064 ntAPPRIS ALT2 TSL 5 BASIC23.21■■□□□ 1.31
Ddx58Q6Q899 Fkbp11-201ENSMUST00000003445 731 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
Ddx58Q6Q899 Ndel1-201ENSMUST00000018880 2382 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
Ddx58Q6Q899 Cbfb-204ENSMUST00000109395 2709 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
Ddx58Q6Q899 Numbl-201ENSMUST00000079258 2760 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
Ddx58Q6Q899 Cwh43-202ENSMUST00000065543 2316 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
Retrieved 100 of 76,532 protein–RNA pairs in 50.6 ms