Protein–RNA interactions for Protein: Q6P9L4

Usp49, Ubiquitin carboxyl-terminal hydrolase 49, mousemouse

Predictions only

Length 685 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp49Q6P9L4 Fzd5-202ENSMUST00000116133 2895 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Usp49Q6P9L4 Ppp1r3g-203ENSMUST00000225537 2389 ntAPPRIS P1 BASIC21.06■□□□□ 0.96
Usp49Q6P9L4 Gm26971-201ENSMUST00000182423 1072 ntBASIC21.06■□□□□ 0.96
Usp49Q6P9L4 Cct4-201ENSMUST00000020562 1634 ntTSL 5 BASIC21.06■□□□□ 0.96
Usp49Q6P9L4 Tmem62-201ENSMUST00000067582 2921 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Usp49Q6P9L4 Trmt61a-201ENSMUST00000084947 2433 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Usp49Q6P9L4 Dbr1-201ENSMUST00000066650 2261 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Usp49Q6P9L4 S1pr4-201ENSMUST00000053646 2386 ntAPPRIS P1 BASIC21.05■□□□□ 0.96
Usp49Q6P9L4 Kcng3-201ENSMUST00000051482 3356 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Usp49Q6P9L4 Nfix-201ENSMUST00000076715 1403 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
Usp49Q6P9L4 Pgs1-203ENSMUST00000132676 2863 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Usp49Q6P9L4 Gm13146-201ENSMUST00000118508 780 ntBASIC21.05■□□□□ 0.96
Usp49Q6P9L4 Cox6a1-201ENSMUST00000040154 571 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Usp49Q6P9L4 Pgrmc2-201ENSMUST00000058578 3007 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Usp49Q6P9L4 Sfr1-201ENSMUST00000099353 1583 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Usp49Q6P9L4 Ube2d2a-201ENSMUST00000167406 2393 ntAPPRIS P1 TSL 5 BASIC21.04■□□□□ 0.96
Usp49Q6P9L4 Cyyr1-204ENSMUST00000175700 1294 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
Usp49Q6P9L4 Gm45168-202ENSMUST00000206461 1069 ntTSL 5 BASIC21.04■□□□□ 0.96
Usp49Q6P9L4 Bmp6-201ENSMUST00000171970 3593 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Usp49Q6P9L4 Gm3164-201ENSMUST00000168866 1945 ntAPPRIS P1 TSL 5 BASIC21.04■□□□□ 0.96
Usp49Q6P9L4 Nkiras2-203ENSMUST00000107376 1727 ntAPPRIS P1 TSL 5 BASIC21.04■□□□□ 0.96
Usp49Q6P9L4 Clint1-202ENSMUST00000109261 3365 ntAPPRIS ALT2 TSL 5 BASIC21.03■□□□□ 0.96
Usp49Q6P9L4 Nudt10-201ENSMUST00000103006 1775 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Usp49Q6P9L4 Naa50-202ENSMUST00000063542 2136 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
Usp49Q6P9L4 Smarcd3-208ENSMUST00000195943 1712 ntTSL 5 BASIC21.03■□□□□ 0.96
Usp49Q6P9L4 Smarcd3-201ENSMUST00000030791 1735 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Usp49Q6P9L4 Dmtn-210ENSMUST00000228824 2377 ntBASIC21.03■□□□□ 0.96
Usp49Q6P9L4 Frmd4a-201ENSMUST00000075767 6761 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.96
Usp49Q6P9L4 Hp1bp3-205ENSMUST00000105827 5155 ntAPPRIS ALT2 TSL 5 BASIC21.02■□□□□ 0.96
Usp49Q6P9L4 Syndig1-202ENSMUST00000109935 2050 ntAPPRIS P1 TSL 5 BASIC21.02■□□□□ 0.96
Usp49Q6P9L4 Ypel3-201ENSMUST00000038614 973 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Usp49Q6P9L4 Grifin-201ENSMUST00000042993 613 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Usp49Q6P9L4 Cerk-201ENSMUST00000044332 4518 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Usp49Q6P9L4 Gm26995-201ENSMUST00000182216 1306 ntTSL 1 (best) BASIC21.02■□□□□ 0.95
Usp49Q6P9L4 Trim58-201ENSMUST00000075084 2192 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
Usp49Q6P9L4 Cpeb3-202ENSMUST00000123727 2411 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.95
Usp49Q6P9L4 Gm26689-201ENSMUST00000180927 1818 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
Usp49Q6P9L4 Gm26553-201ENSMUST00000181531 1818 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
Usp49Q6P9L4 Kctd15-201ENSMUST00000032709 2480 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Usp49Q6P9L4 Sos2-206ENSMUST00000183277 4512 ntAPPRIS ALT2 TSL 5 BASIC21.01■□□□□ 0.95
Usp49Q6P9L4 Alg1-202ENSMUST00000100196 1755 ntAPPRIS P2 TSL 1 (best) BASIC21.01■□□□□ 0.95
Usp49Q6P9L4 Ppp4r1l-ps-204ENSMUST00000140992 367 ntTSL 3 BASIC21.01■□□□□ 0.95
Usp49Q6P9L4 Vax2os-202ENSMUST00000150233 595 ntTSL 3 BASIC21.01■□□□□ 0.95
Usp49Q6P9L4 Dtwd2-201ENSMUST00000025383 2476 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Usp49Q6P9L4 Swsap1-201ENSMUST00000053583 1838 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Usp49Q6P9L4 Mcu-202ENSMUST00000020312 2872 ntAPPRIS P1 TSL 5 BASIC21.01■□□□□ 0.95
Usp49Q6P9L4 Klhdc9-201ENSMUST00000061878 1558 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Usp49Q6P9L4 Esx1-201ENSMUST00000074698 1600 ntAPPRIS P2 TSL 1 (best) BASIC21■□□□□ 0.95
Usp49Q6P9L4 Chka-201ENSMUST00000025760 2319 ntAPPRIS ALT2 TSL 5 BASIC21■□□□□ 0.95
Usp49Q6P9L4 Ccdc85c-202ENSMUST00000222310 4298 ntAPPRIS P2 TSL 5 BASIC21■□□□□ 0.95
Usp49Q6P9L4 Clint1-201ENSMUST00000109260 3311 ntAPPRIS P3 TSL 1 (best) BASIC21■□□□□ 0.95
Usp49Q6P9L4 Sh2b3-203ENSMUST00000118580 2393 ntAPPRIS ALT2 TSL 2 BASIC21■□□□□ 0.95
Usp49Q6P9L4 Tsc22d4-205ENSMUST00000110985 790 ntAPPRIS ALT2 TSL 2 BASIC21■□□□□ 0.95
Usp49Q6P9L4 2510002D24Rik-202ENSMUST00000123146 361 ntTSL 1 (best) BASIC21■□□□□ 0.95
Usp49Q6P9L4 Tmbim4-201ENSMUST00000020446 904 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Usp49Q6P9L4 Igf2bp2-201ENSMUST00000100052 3899 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Usp49Q6P9L4 Zfp821-206ENSMUST00000212964 2033 ntTSL 1 (best) BASIC21■□□□□ 0.95
Usp49Q6P9L4 Paics-201ENSMUST00000031160 2482 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Usp49Q6P9L4 Adap2-201ENSMUST00000021050 1785 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Usp49Q6P9L4 Znrf3-201ENSMUST00000109867 6311 ntAPPRIS P3 TSL 5 BASIC20.99■□□□□ 0.95
Usp49Q6P9L4 BC005561-201ENSMUST00000096452 5409 ntAPPRIS P1 TSL 2 BASIC20.99■□□□□ 0.95
Usp49Q6P9L4 Med14-201ENSMUST00000076016 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
Usp49Q6P9L4 Ppm1m-203ENSMUST00000140761 1846 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Usp49Q6P9L4 Pias2-202ENSMUST00000114777 4968 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
Usp49Q6P9L4 Syde1-201ENSMUST00000040580 3288 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Usp49Q6P9L4 6030445D17Rik-201ENSMUST00000084593 1728 ntAPPRIS P1 BASIC20.99■□□□□ 0.95
Usp49Q6P9L4 Echs1-201ENSMUST00000026538 1557 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Usp49Q6P9L4 Ralgapa1-204ENSMUST00000219432 6631 ntTSL 5 BASIC20.99■□□□□ 0.95
Usp49Q6P9L4 Rfc5-202ENSMUST00000111953 772 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
Usp49Q6P9L4 Kctd17-206ENSMUST00000162517 901 ntAPPRIS P4 TSL 1 (best) BASIC20.99■□□□□ 0.95
Usp49Q6P9L4 Kctd17-209ENSMUST00000166142 826 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
Usp49Q6P9L4 Gon7-202ENSMUST00000179263 525 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
Usp49Q6P9L4 Gm8495-201ENSMUST00000188740 694 ntBASIC20.99■□□□□ 0.95
Usp49Q6P9L4 Msantd1-203ENSMUST00000202205 744 ntTSL 2 BASIC20.99■□□□□ 0.95
Usp49Q6P9L4 Nudt14-202ENSMUST00000221397 1241 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Usp49Q6P9L4 Galnt9-201ENSMUST00000040001 2883 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Usp49Q6P9L4 Sec61a2-202ENSMUST00000102981 2448 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Usp49Q6P9L4 Pparg-202ENSMUST00000171644 2125 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Usp49Q6P9L4 Gm10167-201ENSMUST00000150411 1479 ntBASIC20.99■□□□□ 0.95
Usp49Q6P9L4 Fev-201ENSMUST00000068631 1490 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Usp49Q6P9L4 Olfr94-201ENSMUST00000055324 1304 ntAPPRIS P2 BASIC20.99■□□□□ 0.95
Usp49Q6P9L4 Map6-202ENSMUST00000107100 2335 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
Usp49Q6P9L4 Map7d2-203ENSMUST00000112471 3670 ntAPPRIS P3 TSL 5 BASIC20.99■□□□□ 0.95
Usp49Q6P9L4 Insig2-201ENSMUST00000003818 2697 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Usp49Q6P9L4 Lhx2-203ENSMUST00000143783 1696 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
Usp49Q6P9L4 Gdf15-202ENSMUST00000110103 1380 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Usp49Q6P9L4 Zbtb11os1-201ENSMUST00000186480 1350 ntBASIC20.98■□□□□ 0.95
Usp49Q6P9L4 AC165249.1-201ENSMUST00000220031 1599 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
Usp49Q6P9L4 Nt5c3b-204ENSMUST00000107398 1635 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
Usp49Q6P9L4 Gm13234-201ENSMUST00000120010 747 ntBASIC20.98■□□□□ 0.95
Usp49Q6P9L4 Apoe-205ENSMUST00000173739 1221 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Usp49Q6P9L4 Apoe-209ENSMUST00000174355 1104 ntAPPRIS P1 TSL 5 BASIC20.98■□□□□ 0.95
Usp49Q6P9L4 1700012B09Rik-204ENSMUST00000191047 654 ntAPPRIS ALT2 TSL 3 BASIC20.98■□□□□ 0.95
Usp49Q6P9L4 Apoe-201ENSMUST00000003066 1128 ntAPPRIS P1 TSL 5 BASIC20.98■□□□□ 0.95
Usp49Q6P9L4 Arl6ip4-201ENSMUST00000031351 1192 ntAPPRIS P2 TSL 1 (best) BASIC20.98■□□□□ 0.95
Usp49Q6P9L4 P2rx4-202ENSMUST00000081554 1887 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
Usp49Q6P9L4 Socs6-203ENSMUST00000125362 2814 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Usp49Q6P9L4 Gm29394-202ENSMUST00000176935 1326 ntAPPRIS P5 TSL 2 BASIC20.98■□□□□ 0.95
Usp49Q6P9L4 Kat14-201ENSMUST00000028911 3801 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Usp49Q6P9L4 Marc2-201ENSMUST00000068725 1917 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Retrieved 100 of 76,532 protein–RNA pairs in 19.6 ms