Protein–RNA interactions for Protein: Q6P8W9

Hmgb4, High mobility group protein B4, mousemouse

Predictions only

Length 181 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb4Q6P8W9 Actrt3-201ENSMUST00000047630 1961 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
Hmgb4Q6P8W9 Ap4s1-201ENSMUST00000021338 1035 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
Hmgb4Q6P8W9 Auh-203ENSMUST00000119311 2627 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
Hmgb4Q6P8W9 E4f1-205ENSMUST00000226941 2642 ntAPPRIS ALT2 BASIC19.58■□□□□ 0.72
Hmgb4Q6P8W9 Wnt16-201ENSMUST00000031681 1663 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
Hmgb4Q6P8W9 Eif2b4-203ENSMUST00000166769 1878 ntTSL 5 BASIC19.58■□□□□ 0.72
Hmgb4Q6P8W9 Plekhh1-201ENSMUST00000039928 6439 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
Hmgb4Q6P8W9 Nexmif-201ENSMUST00000056502 5211 ntAPPRIS ALT2 TSL 1 (best) BASIC19.58■□□□□ 0.72
Hmgb4Q6P8W9 Caml-201ENSMUST00000021963 1382 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Hmgb4Q6P8W9 Dll3-201ENSMUST00000108315 2618 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Hmgb4Q6P8W9 Creb3l1-201ENSMUST00000028663 2603 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Hmgb4Q6P8W9 Golga7-201ENSMUST00000051094 1792 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Hmgb4Q6P8W9 Dnajb11-201ENSMUST00000004574 1927 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Hmgb4Q6P8W9 Polr1d-202ENSMUST00000110557 1137 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
Hmgb4Q6P8W9 Dsg2-203ENSMUST00000121837 953 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
Hmgb4Q6P8W9 2610035F20Rik-202ENSMUST00000177306 1149 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
Hmgb4Q6P8W9 Gm40460-201ENSMUST00000211591 735 ntAPPRIS P1 BASIC19.57■□□□□ 0.72
Hmgb4Q6P8W9 Nkx2-1-202ENSMUST00000178477 2242 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Hmgb4Q6P8W9 Gatad2a-202ENSMUST00000116463 3363 ntAPPRIS ALT2 TSL 1 (best) BASIC19.57■□□□□ 0.72
Hmgb4Q6P8W9 Ppm1n-201ENSMUST00000032560 1648 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Hmgb4Q6P8W9 AW047730-202ENSMUST00000181406 2579 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
Hmgb4Q6P8W9 Atp10a-201ENSMUST00000168747 5419 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Hmgb4Q6P8W9 Arhgef1-204ENSMUST00000117796 3508 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
Hmgb4Q6P8W9 Cpeb3-202ENSMUST00000123727 2411 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
Hmgb4Q6P8W9 Cd248-201ENSMUST00000070630 2560 ntAPPRIS P1 BASIC19.56■□□□□ 0.72
Hmgb4Q6P8W9 Fbxo22-204ENSMUST00000146201 2009 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
Hmgb4Q6P8W9 Dnaja4-201ENSMUST00000070070 3003 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Hmgb4Q6P8W9 Gm12527-201ENSMUST00000117967 564 ntBASIC19.56■□□□□ 0.72
Hmgb4Q6P8W9 Gm6211-202ENSMUST00000167849 925 ntBASIC19.56■□□□□ 0.72
Hmgb4Q6P8W9 Slc7a6os-201ENSMUST00000035925 1246 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Hmgb4Q6P8W9 Xk-201ENSMUST00000015486 5076 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Hmgb4Q6P8W9 Gas2-203ENSMUST00000107591 2232 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Hmgb4Q6P8W9 Foxj3-209ENSMUST00000162267 1391 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
Hmgb4Q6P8W9 Kirrel-201ENSMUST00000041732 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
Hmgb4Q6P8W9 Myef2-209ENSMUST00000152367 2071 ntAPPRIS P4 TSL 1 (best) BASIC19.55■□□□□ 0.72
Hmgb4Q6P8W9 Kcnip2-209ENSMUST00000162528 2395 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
Hmgb4Q6P8W9 Mycl-202ENSMUST00000106252 3293 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Hmgb4Q6P8W9 Arl6ip4-202ENSMUST00000122394 982 ntAPPRIS ALT2 TSL 5 BASIC19.55■□□□□ 0.72
Hmgb4Q6P8W9 Lypla1-208ENSMUST00000150971 877 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
Hmgb4Q6P8W9 Snx12-204ENSMUST00000156473 1114 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
Hmgb4Q6P8W9 Gm10153-202ENSMUST00000210290 963 ntAPPRIS P1 BASIC19.55■□□□□ 0.72
Hmgb4Q6P8W9 Cpne2-201ENSMUST00000048653 2342 ntAPPRIS P2 TSL 1 (best) BASIC19.55■□□□□ 0.72
Hmgb4Q6P8W9 Clk3-201ENSMUST00000065330 2496 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Hmgb4Q6P8W9 Ttc32-201ENSMUST00000085741 1000 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Hmgb4Q6P8W9 Stk11-201ENSMUST00000003152 2566 ntAPPRIS P3 TSL 1 (best) BASIC19.55■□□□□ 0.72
Hmgb4Q6P8W9 6820408C15Rik-201ENSMUST00000039961 1684 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Hmgb4Q6P8W9 Slc35f4-201ENSMUST00000074368 1931 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Hmgb4Q6P8W9 Adamts18-201ENSMUST00000093113 5642 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Hmgb4Q6P8W9 Baiap2l2-201ENSMUST00000165408 2100 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Hmgb4Q6P8W9 Hist1h4c-201ENSMUST00000102967 820 ntAPPRIS P1 BASIC19.54■□□□□ 0.72
Hmgb4Q6P8W9 2610528J11Rik-202ENSMUST00000106367 736 ntAPPRIS P1 TSL 2 BASIC19.54■□□□□ 0.72
Hmgb4Q6P8W9 Tomm6-201ENSMUST00000113301 594 ntAPPRIS P1 TSL 2 BASIC19.54■□□□□ 0.72
Hmgb4Q6P8W9 Josd2-204ENSMUST00000118628 864 ntAPPRIS P1 TSL 2 BASIC19.54■□□□□ 0.72
Hmgb4Q6P8W9 Gm11691-201ENSMUST00000130963 658 ntTSL 2 BASIC19.54■□□□□ 0.72
Hmgb4Q6P8W9 Immp2l-203ENSMUST00000134965 977 ntAPPRIS P1 TSL 5 BASIC19.54■□□□□ 0.72
Hmgb4Q6P8W9 2300009A05Rik-201ENSMUST00000168665 595 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Hmgb4Q6P8W9 C430014B12Rik-202ENSMUST00000186858 657 ntTSL 2 BASIC19.54■□□□□ 0.72
Hmgb4Q6P8W9 Josd2-201ENSMUST00000035844 930 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Hmgb4Q6P8W9 Cracr2b-201ENSMUST00000053670 1698 ntAPPRIS P2 TSL 1 (best) BASIC19.54■□□□□ 0.72
Hmgb4Q6P8W9 Tuba3a-201ENSMUST00000088246 1509 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Hmgb4Q6P8W9 Ube4b-202ENSMUST00000103212 5626 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Hmgb4Q6P8W9 Gga2-201ENSMUST00000033160 4915 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Hmgb4Q6P8W9 Flot2-203ENSMUST00000100784 2699 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
Hmgb4Q6P8W9 Daxx-202ENSMUST00000170075 2673 ntAPPRIS P2 TSL 1 (best) BASIC19.53■□□□□ 0.72
Hmgb4Q6P8W9 Mgll-203ENSMUST00000113582 1034 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
Hmgb4Q6P8W9 Vkorc1-202ENSMUST00000119922 387 ntTSL 3 BASIC19.53■□□□□ 0.72
Hmgb4Q6P8W9 Cck-204ENSMUST00000216138 799 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
Hmgb4Q6P8W9 Tmem54-201ENSMUST00000030575 1064 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
Hmgb4Q6P8W9 Zmym3-207ENSMUST00000120201 1859 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
Hmgb4Q6P8W9 Schip1-206ENSMUST00000182719 2156 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
Hmgb4Q6P8W9 Pou2f2-206ENSMUST00000108418 1934 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
Hmgb4Q6P8W9 Gm20100-201ENSMUST00000209418 2272 ntBASIC19.53■□□□□ 0.72
Hmgb4Q6P8W9 Sptssa-201ENSMUST00000056228 1346 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
Hmgb4Q6P8W9 Unc50-201ENSMUST00000027285 1414 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
Hmgb4Q6P8W9 Ppp1r21-201ENSMUST00000038551 3141 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
Hmgb4Q6P8W9 Hoxb3os-201ENSMUST00000131275 2315 ntTSL 3 BASIC19.52■□□□□ 0.72
Hmgb4Q6P8W9 Rbmxl1-202ENSMUST00000211719 1622 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
Hmgb4Q6P8W9 Gpatch2-201ENSMUST00000044812 1639 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
Hmgb4Q6P8W9 Tnfaip8-208ENSMUST00000148989 1002 ntAPPRIS P1 TSL 2 BASIC19.52■□□□□ 0.72
Hmgb4Q6P8W9 Cers2-201ENSMUST00000015858 2216 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
Hmgb4Q6P8W9 Cfap36-201ENSMUST00000020754 1664 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
Hmgb4Q6P8W9 Ehmt2-203ENSMUST00000097342 3934 ntAPPRIS ALT2 TSL 1 (best) BASIC19.52■□□□□ 0.71
Hmgb4Q6P8W9 Mrps23-203ENSMUST00000118784 1404 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
Hmgb4Q6P8W9 Ier2-201ENSMUST00000060427 1522 ntAPPRIS P1 BASIC19.51■□□□□ 0.71
Hmgb4Q6P8W9 Metap1-201ENSMUST00000029804 2686 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Hmgb4Q6P8W9 AU022751-201ENSMUST00000101698 1838 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
Hmgb4Q6P8W9 Phospho1-201ENSMUST00000054173 1910 ntAPPRIS P1 TSL 2 BASIC19.51■□□□□ 0.71
Hmgb4Q6P8W9 Nrm-201ENSMUST00000074259 1466 ntAPPRIS P2 TSL 1 (best) BASIC19.51■□□□□ 0.71
Hmgb4Q6P8W9 Zfp653-201ENSMUST00000043922 2108 ntAPPRIS P3 TSL 1 (best) BASIC19.51■□□□□ 0.71
Hmgb4Q6P8W9 1700095J03Rik-201ENSMUST00000143715 1808 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
Hmgb4Q6P8W9 Cep57-209ENSMUST00000148086 2467 ntAPPRIS ALT2 TSL 1 (best) BASIC19.5■□□□□ 0.71
Hmgb4Q6P8W9 Ttc39a-203ENSMUST00000106619 1778 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
Hmgb4Q6P8W9 Gssos2-201ENSMUST00000130859 727 ntTSL 3 BASIC19.5■□□□□ 0.71
Hmgb4Q6P8W9 Gm20760-201ENSMUST00000179197 648 ntBASIC19.5■□□□□ 0.71
Hmgb4Q6P8W9 Gm10065-201ENSMUST00000076238 345 ntAPPRIS P1 BASIC19.5■□□□□ 0.71
Hmgb4Q6P8W9 Zfp746-203ENSMUST00000203609 3648 ntAPPRIS ALT2 TSL 5 BASIC19.5■□□□□ 0.71
Hmgb4Q6P8W9 Mapre3-202ENSMUST00000200692 1816 ntTSL 5 BASIC19.5■□□□□ 0.71
Hmgb4Q6P8W9 Smtnl2-201ENSMUST00000050226 2624 ntAPPRIS P2 TSL 1 (best) BASIC19.5■□□□□ 0.71
Hmgb4Q6P8W9 Tmem185a-201ENSMUST00000101506 2429 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
Hmgb4Q6P8W9 Cyp2r1-207ENSMUST00000211506 1887 ntTSL 5 BASIC19.5■□□□□ 0.71
Retrieved 100 of 76,532 protein–RNA pairs in 18 ms