Protein–RNA interactions for Protein: Q6P7W2

Shkbp1, SH3KBP1-binding protein 1, mousemouse

Predictions only

Length 704 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shkbp1Q6P7W2 Rhoq-201ENSMUST00000024956 4151 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Shkbp1Q6P7W2 Tsc22d1-214ENSMUST00000177207 1476 ntTSL 3 BASIC19.6■□□□□ 0.73
Shkbp1Q6P7W2 Gm26674-201ENSMUST00000180770 1446 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
Shkbp1Q6P7W2 Gm45472-201ENSMUST00000211295 1426 ntTSL 5 BASIC19.6■□□□□ 0.73
Shkbp1Q6P7W2 Mboat4-201ENSMUST00000095345 1836 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Shkbp1Q6P7W2 Trmt61a-202ENSMUST00000168338 2131 ntAPPRIS P1 TSL 5 BASIC19.6■□□□□ 0.73
Shkbp1Q6P7W2 Spns2-201ENSMUST00000045303 3241 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Shkbp1Q6P7W2 Eda-204ENSMUST00000113777 1056 ntTSL 5 BASIC19.6■□□□□ 0.73
Shkbp1Q6P7W2 1110065P20Rik-203ENSMUST00000137769 659 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
Shkbp1Q6P7W2 Gm21863-201ENSMUST00000179133 336 ntAPPRIS P1 BASIC19.6■□□□□ 0.73
Shkbp1Q6P7W2 Grp-201ENSMUST00000025395 862 ntAPPRIS P2 TSL 1 (best) BASIC19.6■□□□□ 0.73
Shkbp1Q6P7W2 Eda-201ENSMUST00000071453 1152 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
Shkbp1Q6P7W2 Nfe2-210ENSMUST00000156927 1608 ntAPPRIS P1 TSL 5 BASIC19.6■□□□□ 0.73
Shkbp1Q6P7W2 Mtg1-201ENSMUST00000036977 1595 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Shkbp1Q6P7W2 Glrx5-201ENSMUST00000021522 2925 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Shkbp1Q6P7W2 Kirrel3-202ENSMUST00000115148 2851 ntAPPRIS P3 TSL 5 BASIC19.6■□□□□ 0.73
Shkbp1Q6P7W2 Dtnb-210ENSMUST00000173199 2820 ntAPPRIS ALT2 TSL 5 BASIC19.6■□□□□ 0.73
Shkbp1Q6P7W2 Cers1-203ENSMUST00000165819 2728 ntAPPRIS P4 TSL 1 (best) BASIC19.6■□□□□ 0.73
Shkbp1Q6P7W2 Mgarp-202ENSMUST00000108046 1409 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
Shkbp1Q6P7W2 Plin1-201ENSMUST00000032762 1916 ntAPPRIS P1 TSL 5 BASIC19.59■□□□□ 0.73
Shkbp1Q6P7W2 Samd10-201ENSMUST00000060173 2164 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Shkbp1Q6P7W2 Cav2-201ENSMUST00000000058 2733 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Shkbp1Q6P7W2 Ssu72-202ENSMUST00000105595 874 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
Shkbp1Q6P7W2 D930007J09Rik-201ENSMUST00000057911 393 ntAPPRIS P1 BASIC19.59■□□□□ 0.73
Shkbp1Q6P7W2 Nrn1l-201ENSMUST00000060167 617 ntAPPRIS P3 TSL 1 (best) BASIC19.59■□□□□ 0.73
Shkbp1Q6P7W2 Acy3-201ENSMUST00000054030 1505 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Shkbp1Q6P7W2 Gm3667-201ENSMUST00000171906 2053 ntAPPRIS P1 TSL 5 BASIC19.59■□□□□ 0.73
Shkbp1Q6P7W2 Zcchc2-202ENSMUST00000119166 6368 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
Shkbp1Q6P7W2 Snx20-201ENSMUST00000034087 1699 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Shkbp1Q6P7W2 Nsfl1c-203ENSMUST00000103160 1369 ntTSL 5 BASIC19.58■□□□□ 0.73
Shkbp1Q6P7W2 C230037L18Rik-201ENSMUST00000136218 1886 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
Shkbp1Q6P7W2 Siah1b-201ENSMUST00000037928 1783 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
Shkbp1Q6P7W2 Gfer-201ENSMUST00000046839 1775 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
Shkbp1Q6P7W2 Hs3st4-201ENSMUST00000106437 3189 ntAPPRIS P1 TSL 3 BASIC19.58■□□□□ 0.73
Shkbp1Q6P7W2 Smad4-201ENSMUST00000025393 3384 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
Shkbp1Q6P7W2 Aprt-204ENSMUST00000212093 723 ntTSL 2 BASIC19.58■□□□□ 0.72
Shkbp1Q6P7W2 AC140264.2-202ENSMUST00000218746 817 ntBASIC19.58■□□□□ 0.72
Shkbp1Q6P7W2 Fkbp11-201ENSMUST00000003445 731 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
Shkbp1Q6P7W2 Wdr33-202ENSMUST00000082319 1152 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
Shkbp1Q6P7W2 Map2k1-201ENSMUST00000005066 2436 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
Shkbp1Q6P7W2 Eml2-202ENSMUST00000117338 2765 ntAPPRIS ALT2 TSL 5 BASIC19.58■□□□□ 0.72
Shkbp1Q6P7W2 Ccdc34-201ENSMUST00000028580 2070 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
Shkbp1Q6P7W2 Ascl4-202ENSMUST00000170396 2016 ntAPPRIS P1 BASIC19.58■□□□□ 0.72
Shkbp1Q6P7W2 Ahsa2-201ENSMUST00000020529 3023 ntAPPRIS P3 TSL 1 (best) BASIC19.57■□□□□ 0.72
Shkbp1Q6P7W2 Rnpep-201ENSMUST00000074357 2171 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
Shkbp1Q6P7W2 Hmga1-202ENSMUST00000117254 1328 ntAPPRIS P3 TSL 2 BASIC19.57■□□□□ 0.72
Shkbp1Q6P7W2 Krt79-201ENSMUST00000023799 2097 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Shkbp1Q6P7W2 Rab43-203ENSMUST00000078647 4605 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Shkbp1Q6P7W2 Rpl36al-202ENSMUST00000110619 1276 ntAPPRIS P1 BASIC19.57■□□□□ 0.72
Shkbp1Q6P7W2 Sdr39u1-201ENSMUST00000111325 1255 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Shkbp1Q6P7W2 Gm17035-201ENSMUST00000170557 419 ntTSL 3 BASIC19.57■□□□□ 0.72
Shkbp1Q6P7W2 Prss21-201ENSMUST00000024928 1094 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Shkbp1Q6P7W2 Aprt-201ENSMUST00000006764 849 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Shkbp1Q6P7W2 Mknk2-205ENSMUST00000200082 3439 ntAPPRIS P2 TSL 1 (best) BASIC19.57■□□□□ 0.72
Shkbp1Q6P7W2 B4gat1-201ENSMUST00000053705 2035 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Shkbp1Q6P7W2 Fbxl17-201ENSMUST00000024761 4925 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Shkbp1Q6P7W2 Runx2-210ENSMUST00000162373 1565 ntAPPRIS ALT2 TSL 5 BASIC19.57■□□□□ 0.72
Shkbp1Q6P7W2 Hsf1-205ENSMUST00000227478 2084 ntAPPRIS P1 BASIC19.56■□□□□ 0.72
Shkbp1Q6P7W2 Tcf7l1-202ENSMUST00000114053 1888 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
Shkbp1Q6P7W2 Stard10-211ENSMUST00000210192 1258 ntAPPRIS P1 TSL 5 BASIC19.56■□□□□ 0.72
Shkbp1Q6P7W2 Tmem91-201ENSMUST00000079439 877 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Shkbp1Q6P7W2 Txnrd2-203ENSMUST00000115606 1905 ntAPPRIS P2 TSL 1 (best) BASIC19.56■□□□□ 0.72
Shkbp1Q6P7W2 Chn2-201ENSMUST00000046856 2418 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Shkbp1Q6P7W2 Sstr1-201ENSMUST00000044299 2014 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Shkbp1Q6P7W2 Lrg1-201ENSMUST00000041357 1351 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Shkbp1Q6P7W2 2200002D01Rik-201ENSMUST00000032808 1466 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Shkbp1Q6P7W2 Pigp-203ENSMUST00000113910 966 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
Shkbp1Q6P7W2 Gm15847-201ENSMUST00000121417 1065 ntBASIC19.55■□□□□ 0.72
Shkbp1Q6P7W2 Mir6982-201ENSMUST00000184354 68 ntBASIC19.55■□□□□ 0.72
Shkbp1Q6P7W2 1700003E16Rik-201ENSMUST00000032106 2020 ntAPPRIS P1 TSL 5 BASIC19.54■□□□□ 0.72
Shkbp1Q6P7W2 Lmtk3-202ENSMUST00000120005 4997 ntAPPRIS P2 TSL 1 (best) BASIC19.54■□□□□ 0.72
Shkbp1Q6P7W2 AC126028.2-201ENSMUST00000228100 1833 ntBASIC19.54■□□□□ 0.72
Shkbp1Q6P7W2 Speg-203ENSMUST00000113588 1078 ntTSL 5 BASIC19.54■□□□□ 0.72
Shkbp1Q6P7W2 Gm10698-201ENSMUST00000182663 604 ntBASIC19.54■□□□□ 0.72
Shkbp1Q6P7W2 Rwdd1-201ENSMUST00000019917 1090 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Shkbp1Q6P7W2 Nfu1-201ENSMUST00000032060 948 ntAPPRIS P3 TSL 1 (best) BASIC19.54■□□□□ 0.72
Shkbp1Q6P7W2 H2-Eb1-201ENSMUST00000074557 1184 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Shkbp1Q6P7W2 Cfap206-202ENSMUST00000108136 1688 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
Shkbp1Q6P7W2 Txndc15-201ENSMUST00000021959 1527 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Shkbp1Q6P7W2 Mdfi-201ENSMUST00000035375 1371 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Shkbp1Q6P7W2 Paqr3-201ENSMUST00000069453 1375 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Shkbp1Q6P7W2 Jak2-201ENSMUST00000025705 4947 ntAPPRIS P1 TSL 5 BASIC19.54■□□□□ 0.72
Shkbp1Q6P7W2 B130046B21Rik-201ENSMUST00000181510 2216 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
Shkbp1Q6P7W2 Spc24-205ENSMUST00000217382 1696 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
Shkbp1Q6P7W2 Galk1-201ENSMUST00000021114 1406 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Shkbp1Q6P7W2 Nags-201ENSMUST00000055409 2028 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Shkbp1Q6P7W2 Vstm2b-201ENSMUST00000044705 2627 ntAPPRIS P1 TSL 5 BASIC19.53■□□□□ 0.72
Shkbp1Q6P7W2 Mir7071-201ENSMUST00000184847 69 ntBASIC19.53■□□□□ 0.72
Shkbp1Q6P7W2 Gm18666-201ENSMUST00000190039 958 ntBASIC19.53■□□□□ 0.72
Shkbp1Q6P7W2 Tpgs1-201ENSMUST00000020552 1143 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Shkbp1Q6P7W2 Gm44899-201ENSMUST00000207451 391 ntTSL 3 BASIC19.53■□□□□ 0.72
Shkbp1Q6P7W2 Zfp692-201ENSMUST00000049353 1860 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Shkbp1Q6P7W2 Picalm-215ENSMUST00000209068 3511 ntAPPRIS ALT2 TSL 5 BASIC19.53■□□□□ 0.72
Shkbp1Q6P7W2 Serpinh1-202ENSMUST00000169437 2274 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Shkbp1Q6P7W2 Cnnm1-201ENSMUST00000165311 5037 ntAPPRIS P2 TSL 1 (best) BASIC19.52■□□□□ 0.72
Shkbp1Q6P7W2 Mrpl9-202ENSMUST00000196143 1657 ntAPPRIS ALT2 TSL 1 (best) BASIC19.52■□□□□ 0.72
Shkbp1Q6P7W2 Arid3c-202ENSMUST00000150809 1327 ntAPPRIS ALT2 TSL 1 (best) BASIC19.52■□□□□ 0.72
Shkbp1Q6P7W2 Nrn1-203ENSMUST00000223611 1443 ntBASIC19.52■□□□□ 0.72
Shkbp1Q6P7W2 Pacsin2-201ENSMUST00000056177 2795 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
Shkbp1Q6P7W2 Tex30-204ENSMUST00000128190 1275 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
Retrieved 100 of 76,532 protein–RNA pairs in 19.4 ms