Protein–RNA interactions for Protein: Q62233

Six3, Homeobox protein SIX3, mousemouse

Predictions only

Length 333 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Six3Q62233 Pou2f2-206ENSMUST00000108418 1934 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
Six3Q62233 Txnrd2-203ENSMUST00000115606 1905 ntAPPRIS P2 TSL 1 (best) BASIC18.31■□□□□ 0.52
Six3Q62233 Acot7-201ENSMUST00000030779 1425 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
Six3Q62233 Pard3-219ENSMUST00000162309 5659 ntAPPRIS P3 TSL 1 (best) BASIC18.31■□□□□ 0.52
Six3Q62233 Prmt9-201ENSMUST00000056237 2781 ntAPPRIS P2 TSL 1 (best) BASIC18.3■□□□□ 0.52
Six3Q62233 Mdfi-201ENSMUST00000035375 1371 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Six3Q62233 Dapk1-207ENSMUST00000226059 5009 ntBASIC18.3■□□□□ 0.52
Six3Q62233 Rbm15b-201ENSMUST00000055843 6511 ntAPPRIS P1 BASIC18.3■□□□□ 0.52
Six3Q62233 Ism1-201ENSMUST00000099307 2944 ntTSL 5 BASIC18.3■□□□□ 0.52
Six3Q62233 Tmem185a-202ENSMUST00000114630 1307 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Six3Q62233 Pacsin3-203ENSMUST00000111349 1993 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Six3Q62233 Prdm8-201ENSMUST00000112959 4553 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Six3Q62233 Ppp1r3g-203ENSMUST00000225537 2389 ntAPPRIS P1 BASIC18.3■□□□□ 0.52
Six3Q62233 Spaca1-201ENSMUST00000029927 1197 ntAPPRIS P3 TSL 1 (best) BASIC18.3■□□□□ 0.52
Six3Q62233 Spaca1-202ENSMUST00000084734 1149 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
Six3Q62233 Peli2-201ENSMUST00000073150 5900 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Six3Q62233 Ripk2-201ENSMUST00000037035 2692 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Six3Q62233 Galnt9-201ENSMUST00000040001 2883 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Six3Q62233 Pex11b-202ENSMUST00000118557 2424 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Six3Q62233 Gm5953-201ENSMUST00000220644 2616 ntBASIC18.3■□□□□ 0.52
Six3Q62233 Klhl36-201ENSMUST00000034287 2181 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Six3Q62233 Sigmar1-202ENSMUST00000071561 1547 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
Six3Q62233 Sept4-206ENSMUST00000122067 1303 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
Six3Q62233 Btbd2-201ENSMUST00000003434 3026 ntAPPRIS P2 TSL 5 BASIC18.29■□□□□ 0.52
Six3Q62233 Snx20-201ENSMUST00000034087 1699 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Six3Q62233 Plk3-201ENSMUST00000076859 2378 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Six3Q62233 Gm44866-201ENSMUST00000208774 391 ntTSL 2 BASIC18.29■□□□□ 0.52
Six3Q62233 Epdr1-204ENSMUST00000221014 692 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
Six3Q62233 Ikzf1-202ENSMUST00000048122 911 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
Six3Q62233 Hoxc12-201ENSMUST00000055562 1031 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Six3Q62233 Trim58-201ENSMUST00000075084 2192 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Six3Q62233 Espn-205ENSMUST00000084114 1645 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
Six3Q62233 Kcnt1-203ENSMUST00000114172 5219 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
Six3Q62233 Epc2-201ENSMUST00000092123 4697 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Six3Q62233 Gfra1-208ENSMUST00000152507 1937 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
Six3Q62233 Gm3020-202ENSMUST00000167430 1933 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Six3Q62233 Gm10409-201ENSMUST00000170123 1933 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Six3Q62233 9430060I03Rik-201ENSMUST00000191563 1689 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Six3Q62233 Slc16a10-202ENSMUST00000213488 2325 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Six3Q62233 Fam78b-205ENSMUST00000165874 4986 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Six3Q62233 Irx5-201ENSMUST00000034184 2450 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Six3Q62233 Acvr1b-201ENSMUST00000000544 4413 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Six3Q62233 Tesk1-201ENSMUST00000060864 3947 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Six3Q62233 Snhg20-202ENSMUST00000149822 593 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Six3Q62233 AC114678.1-201ENSMUST00000219640 622 ntTSL 3 BASIC18.28■□□□□ 0.52
Six3Q62233 Hyi-201ENSMUST00000006562 910 ntAPPRIS P1 TSL 5 BASIC18.28■□□□□ 0.52
Six3Q62233 Kctd17-201ENSMUST00000089414 1180 ntAPPRIS ALT2 TSL 5 BASIC18.28■□□□□ 0.52
Six3Q62233 Tgif1-209ENSMUST00000166395 1714 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Six3Q62233 Swsap1-201ENSMUST00000053583 1838 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Six3Q62233 Ube2q2-201ENSMUST00000059555 3456 ntAPPRIS P3 TSL 1 (best) BASIC18.27■□□□□ 0.52
Six3Q62233 Dennd2a-201ENSMUST00000036877 4468 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Six3Q62233 M5C1000I18Rik-202ENSMUST00000186205 1414 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
Six3Q62233 Anapc1-202ENSMUST00000110332 1214 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
Six3Q62233 Stau2-203ENSMUST00000115359 1151 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
Six3Q62233 Capn10-202ENSMUST00000117814 1268 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
Six3Q62233 Gng5-203ENSMUST00000119130 593 ntTSL 2 BASIC18.27■□□□□ 0.52
Six3Q62233 Prmt1-210ENSMUST00000208829 621 ntTSL 5 BASIC18.27■□□□□ 0.52
Six3Q62233 Insig2-201ENSMUST00000003818 2697 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Six3Q62233 Mapre3-202ENSMUST00000200692 1816 ntTSL 5 BASIC18.27■□□□□ 0.52
Six3Q62233 Capzb-204ENSMUST00000102508 1674 ntAPPRIS ALT1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Six3Q62233 0610038B21Rik-202ENSMUST00000184762 1524 ntBASIC18.27■□□□□ 0.51
Six3Q62233 Tmod1-201ENSMUST00000107773 3158 ntAPPRIS P1 TSL 5 BASIC18.27■□□□□ 0.51
Six3Q62233 Ppp3ca-201ENSMUST00000056758 2194 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
Six3Q62233 Psmd3-201ENSMUST00000017365 2148 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Six3Q62233 Arhgap23-203ENSMUST00000121799 5816 ntAPPRIS P1 TSL 5 BASIC18.26■□□□□ 0.51
Six3Q62233 Osbpl1a-203ENSMUST00000118313 2893 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
Six3Q62233 Rnf26-201ENSMUST00000056328 2724 ntAPPRIS P2 BASIC18.26■□□□□ 0.51
Six3Q62233 Cacul1-202ENSMUST00000111460 5561 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
Six3Q62233 Gsx2-201ENSMUST00000040477 1665 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Six3Q62233 Cdc34b-202ENSMUST00000188741 1252 ntBASIC18.26■□□□□ 0.51
Six3Q62233 Cdc34-201ENSMUST00000020550 1266 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Six3Q62233 Cdc34b-201ENSMUST00000021240 1233 ntAPPRIS P1 BASIC18.26■□□□□ 0.51
Six3Q62233 Acbd6-202ENSMUST00000080138 993 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
Six3Q62233 Ssx2ip-204ENSMUST00000106153 3446 ntAPPRIS P3 TSL 1 (best) BASIC18.26■□□□□ 0.51
Six3Q62233 Med14-201ENSMUST00000076016 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
Six3Q62233 Syncrip-205ENSMUST00000173801 2944 ntAPPRIS ALT1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Six3Q62233 Gpc6-204ENSMUST00000125435 2423 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
Six3Q62233 Cox18-202ENSMUST00000118816 1307 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
Six3Q62233 Eno1-202ENSMUST00000080926 2027 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Six3Q62233 Gm21992-201ENSMUST00000172000 1434 ntAPPRIS P1 TSL 2 BASIC18.25■□□□□ 0.51
Six3Q62233 Gm21992-206ENSMUST00000179909 1435 ntTSL 5 BASIC18.25■□□□□ 0.51
Six3Q62233 Mmp15-201ENSMUST00000034243 5135 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Six3Q62233 Spsb3-203ENSMUST00000117890 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
Six3Q62233 Shq1-201ENSMUST00000089245 1638 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
Six3Q62233 1810022K09Rik-201ENSMUST00000108365 559 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
Six3Q62233 Gfra4-205ENSMUST00000110239 810 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
Six3Q62233 Cnpy3-202ENSMUST00000121671 561 ntTSL 2 BASIC18.25■□□□□ 0.51
Six3Q62233 Gm38205-201ENSMUST00000192243 258 ntBASIC18.25■□□□□ 0.51
Six3Q62233 Gfra4-201ENSMUST00000028787 909 ntAPPRIS P3 TSL 1 (best) BASIC18.25■□□□□ 0.51
Six3Q62233 Smc6-201ENSMUST00000020931 5603 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Six3Q62233 Fam71b-201ENSMUST00000063166 2185 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Six3Q62233 Ogfod2-202ENSMUST00000119269 1474 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
Six3Q62233 Cd37-209ENSMUST00000211373 1428 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
Six3Q62233 Cdkl3-207ENSMUST00000109080 2749 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
Six3Q62233 Wnk2-204ENSMUST00000110096 6534 ntAPPRIS ALT2 TSL 5 BASIC18.24■□□□□ 0.51
Six3Q62233 Igsf8-202ENSMUST00000085912 2182 ntAPPRIS P1 TSL 5 BASIC18.24■□□□□ 0.51
Six3Q62233 Pgrmc2-201ENSMUST00000058578 3007 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Six3Q62233 Gm26689-201ENSMUST00000180927 1818 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
Six3Q62233 Gm26553-201ENSMUST00000181531 1818 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
Six3Q62233 Fbxo44-201ENSMUST00000057907 1829 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Retrieved 100 of 76,532 protein–RNA pairs in 23.8 ms