Protein–RNA interactions for Protein: Q62226

Shh, Sonic hedgehog protein, mousemouse

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ShhQ62226 AC135637.1-201ENSMUST00000227750 365 ntBASIC17.41■□□□□ 0.38
ShhQ62226 Rps23-201ENSMUST00000051955 937 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
ShhQ62226 Nkx2-1-202ENSMUST00000178477 2242 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
ShhQ62226 6820408C15Rik-201ENSMUST00000039961 1684 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
ShhQ62226 Tbc1d25-201ENSMUST00000039892 2648 ntAPPRIS P3 TSL 1 (best) BASIC17.41■□□□□ 0.38
ShhQ62226 Slc25a4-201ENSMUST00000034049 1925 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
ShhQ62226 Pllp-201ENSMUST00000034227 1926 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
ShhQ62226 Gsto2-201ENSMUST00000056159 1351 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
ShhQ62226 Klhdc3-202ENSMUST00000165007 1973 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
ShhQ62226 Mgat4b-201ENSMUST00000041725 2429 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
ShhQ62226 Sqstm1-202ENSMUST00000102774 2037 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
ShhQ62226 Cant1-205ENSMUST00000106289 1600 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
ShhQ62226 Rps6ka3-201ENSMUST00000033671 7244 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
ShhQ62226 Cpne2-201ENSMUST00000048653 2342 ntAPPRIS P2 TSL 1 (best) BASIC17.4■□□□□ 0.38
ShhQ62226 Tomm6-201ENSMUST00000113301 594 ntAPPRIS P1 TSL 2 BASIC17.4■□□□□ 0.38
ShhQ62226 Uncx-202ENSMUST00000174792 1196 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
ShhQ62226 Kcnc3-207ENSMUST00000209177 2960 ntAPPRIS ALT2 TSL 5 BASIC17.4■□□□□ 0.38
ShhQ62226 Nnat-201ENSMUST00000088484 458 ntTSL 2 BASIC17.4■□□□□ 0.38
ShhQ62226 Fgf3-201ENSMUST00000105898 2299 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
ShhQ62226 Dnpep-204ENSMUST00000185797 2510 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
ShhQ62226 Gm26708-203ENSMUST00000208236 1624 ntTSL 5 BASIC17.39■□□□□ 0.38
ShhQ62226 Gm10571-201ENSMUST00000097869 1638 ntBASIC17.39■□□□□ 0.38
ShhQ62226 Hoxa10-202ENSMUST00000125581 2565 ntTSL 1 (best) BASIC17.39■□□□□ 0.38
ShhQ62226 Tmem55b-205ENSMUST00000160835 2755 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.37
ShhQ62226 Plppr3-201ENSMUST00000092325 2766 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.37
ShhQ62226 Gon7-202ENSMUST00000179263 525 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
ShhQ62226 Gm10065-201ENSMUST00000076238 345 ntAPPRIS P1 BASIC17.39■□□□□ 0.37
ShhQ62226 Rtl8a-201ENSMUST00000088779 1195 ntAPPRIS P1 BASIC17.39■□□□□ 0.37
ShhQ62226 Lhx8-201ENSMUST00000177846 2076 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
ShhQ62226 Paxip1-201ENSMUST00000002291 5850 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
ShhQ62226 5730507C01Rik-201ENSMUST00000063216 2431 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.37
ShhQ62226 Itga9-201ENSMUST00000044165 7020 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
ShhQ62226 Sfrp5-201ENSMUST00000018966 1900 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
ShhQ62226 Mmp15-201ENSMUST00000034243 5135 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
ShhQ62226 Aire-203ENSMUST00000105396 1749 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
ShhQ62226 Aire-214ENSMUST00000154374 1712 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
ShhQ62226 Aire-215ENSMUST00000155021 1737 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
ShhQ62226 Ascl4-202ENSMUST00000170396 2016 ntAPPRIS P1 BASIC17.38■□□□□ 0.37
ShhQ62226 Mall-201ENSMUST00000028856 2006 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
ShhQ62226 Fgfr3-202ENSMUST00000087820 2630 ntAPPRIS ALT2 TSL 5 BASIC17.38■□□□□ 0.37
ShhQ62226 Celf6-203ENSMUST00000118549 2973 ntAPPRIS ALT2 TSL 5 BASIC17.38■□□□□ 0.37
ShhQ62226 Foxp1-220ENSMUST00000176565 3727 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
ShhQ62226 Nudt3-201ENSMUST00000025050 2193 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
ShhQ62226 Klhl2-201ENSMUST00000034017 3412 ntAPPRIS P2 TSL 1 (best) BASIC17.38■□□□□ 0.37
ShhQ62226 Sept7-201ENSMUST00000115272 2533 ntAPPRIS ALT1 TSL 5 BASIC17.38■□□□□ 0.37
ShhQ62226 Zfp560-202ENSMUST00000143992 608 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
ShhQ62226 Ndufa12-204ENSMUST00000179990 566 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
ShhQ62226 Msantd1-203ENSMUST00000202205 744 ntTSL 2 BASIC17.38■□□□□ 0.37
ShhQ62226 1110004E09Rik-201ENSMUST00000023694 1143 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
ShhQ62226 BC107364-201ENSMUST00000093126 1159 ntAPPRIS P4 TSL 1 (best) BASIC17.38■□□□□ 0.37
ShhQ62226 Ubxn1-201ENSMUST00000096255 1041 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
ShhQ62226 Cops9-201ENSMUST00000097642 438 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
ShhQ62226 BC107364-202ENSMUST00000098841 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
ShhQ62226 Sigmar1-201ENSMUST00000059354 1640 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
ShhQ62226 Sept4-206ENSMUST00000122067 1303 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
ShhQ62226 Mast4-202ENSMUST00000164111 2350 ntTSL 2 BASIC17.37■□□□□ 0.37
ShhQ62226 Abhd13-202ENSMUST00000139793 5191 ntAPPRIS P1 TSL 2 BASIC17.37■□□□□ 0.37
ShhQ62226 D030056L22Rik-201ENSMUST00000055792 1631 ntAPPRIS P2 TSL 1 (best) BASIC17.37■□□□□ 0.37
ShhQ62226 Gm7290-201ENSMUST00000104990 617 ntBASIC17.37■□□□□ 0.37
ShhQ62226 Gm12918-201ENSMUST00000120234 636 ntBASIC17.37■□□□□ 0.37
ShhQ62226 Gm15710-201ENSMUST00000121821 636 ntBASIC17.37■□□□□ 0.37
ShhQ62226 Gm53-201ENSMUST00000129907 1172 ntTSL 2 BASIC17.37■□□□□ 0.37
ShhQ62226 1700101I19Rik-202ENSMUST00000186712 510 ntBASIC17.37■□□□□ 0.37
ShhQ62226 Gm5075-201ENSMUST00000196916 622 ntBASIC17.37■□□□□ 0.37
ShhQ62226 Gm20049-201ENSMUST00000219950 730 ntBASIC17.37■□□□□ 0.37
ShhQ62226 Rpl13-ps6-201ENSMUST00000079761 636 ntBASIC17.37■□□□□ 0.37
ShhQ62226 Rpl13-ps3-201ENSMUST00000079960 624 ntBASIC17.37■□□□□ 0.37
ShhQ62226 Wnt10b-201ENSMUST00000023732 2226 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
ShhQ62226 Cd24a-201ENSMUST00000058714 1816 ntAPPRIS P2 TSL 1 (best) BASIC17.37■□□□□ 0.37
ShhQ62226 Sncb-201ENSMUST00000036825 1351 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
ShhQ62226 Gm15751-201ENSMUST00000134552 1862 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
ShhQ62226 Tnpo2-207ENSMUST00000211601 2941 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
ShhQ62226 Hnrnpl-211ENSMUST00000174548 2679 ntAPPRIS P1 TSL 5 BASIC17.36■□□□□ 0.37
ShhQ62226 Ppm1h-201ENSMUST00000067918 6369 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
ShhQ62226 D830050J10Rik-202ENSMUST00000203858 1813 ntBASIC17.36■□□□□ 0.37
ShhQ62226 Foxk1-202ENSMUST00000198422 687 ntTSL 3 BASIC17.36■□□□□ 0.37
ShhQ62226 Gm40460-201ENSMUST00000211591 735 ntAPPRIS P1 BASIC17.36■□□□□ 0.37
ShhQ62226 Cyb561-201ENSMUST00000019734 2741 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
ShhQ62226 Eif4h-205ENSMUST00000202622 2726 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
ShhQ62226 Trim72-202ENSMUST00000106248 2134 ntAPPRIS P1 TSL 5 BASIC17.36■□□□□ 0.37
ShhQ62226 Baiap2l2-201ENSMUST00000165408 2100 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
ShhQ62226 A930001C03Rik-204ENSMUST00000154407 1402 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
ShhQ62226 Arhgap44-202ENSMUST00000093001 2256 ntTSL 2 BASIC17.36■□□□□ 0.37
ShhQ62226 Fam3c-203ENSMUST00000163963 1617 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
ShhQ62226 Agpat3-201ENSMUST00000001240 5980 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
ShhQ62226 Gm45640-201ENSMUST00000210665 1896 ntBASIC17.35■□□□□ 0.37
ShhQ62226 Phox2b-201ENSMUST00000012664 3013 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
ShhQ62226 Sra1-201ENSMUST00000001415 2061 ntAPPRIS P4 TSL 5 BASIC17.35■□□□□ 0.37
ShhQ62226 Kirrel-201ENSMUST00000041732 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
ShhQ62226 Coro1a-209ENSMUST00000173108 1170 ntTSL 5 BASIC17.35■□□□□ 0.37
ShhQ62226 AC130671.1-201ENSMUST00000227384 1237 ntBASIC17.35■□□□□ 0.37
ShhQ62226 1700067K01Rik-201ENSMUST00000060357 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
ShhQ62226 Rbfox3-202ENSMUST00000069343 1553 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
ShhQ62226 Sema6d-203ENSMUST00000077847 6444 ntTSL 5 BASIC17.35■□□□□ 0.37
ShhQ62226 Vgll2-202ENSMUST00000163017 1650 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
ShhQ62226 Dapk1-207ENSMUST00000226059 5009 ntBASIC17.35■□□□□ 0.37
ShhQ62226 Etnk1-203ENSMUST00000204947 1791 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
ShhQ62226 Cd82-201ENSMUST00000028644 1824 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
ShhQ62226 1700123O20Rik-201ENSMUST00000038539 1843 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
ShhQ62226 Gm32699-201ENSMUST00000221728 1988 ntBASIC17.35■□□□□ 0.37
Retrieved 100 of 76,532 protein–RNA pairs in 18.2 ms