Protein–RNA interactions for Protein: Q61124

Cln3, Battenin, mousemouse

Predictions only

Length 438 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cln3Q61124 Sap18-201ENSMUST00000111267 660 ntTSL 2 BASIC20.69■□□□□ 0.9
Cln3Q61124 Tpm1-208ENSMUST00000113689 904 ntTSL 5 BASIC20.69■□□□□ 0.9
Cln3Q61124 Gm15378-201ENSMUST00000121894 207 ntBASIC20.69■□□□□ 0.9
Cln3Q61124 Smim10l1-204ENSMUST00000191462 574 ntTSL 3 BASIC20.69■□□□□ 0.9
Cln3Q61124 Plpp1-202ENSMUST00000070951 1272 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
Cln3Q61124 Taf4-201ENSMUST00000041618 4416 ntAPPRIS P2 TSL 1 (best) BASIC20.69■□□□□ 0.9
Cln3Q61124 Gtpbp2-201ENSMUST00000024748 2966 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Cln3Q61124 Gm38160-201ENSMUST00000193090 2499 ntBASIC20.68■□□□□ 0.9
Cln3Q61124 Nfe2-210ENSMUST00000156927 1608 ntAPPRIS P1 TSL 5 BASIC20.68■□□□□ 0.9
Cln3Q61124 Gm15565-201ENSMUST00000118890 427 ntBASIC20.68■□□□□ 0.9
Cln3Q61124 Gm13836-201ENSMUST00000121159 501 ntBASIC20.68■□□□□ 0.9
Cln3Q61124 Gm13158-201ENSMUST00000122007 736 ntBASIC20.68■□□□□ 0.9
Cln3Q61124 Zfp787-204ENSMUST00000207628 576 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
Cln3Q61124 Atp23-201ENSMUST00000026504 903 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
Cln3Q61124 Fxn-201ENSMUST00000081333 1114 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Cln3Q61124 Tmed3-201ENSMUST00000058488 1346 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Cln3Q61124 Tcp11-201ENSMUST00000042692 1984 ntAPPRIS P3 TSL 1 (best) BASIC20.68■□□□□ 0.9
Cln3Q61124 Hs3st4-201ENSMUST00000106437 3189 ntAPPRIS P1 TSL 3 BASIC20.67■□□□□ 0.9
Cln3Q61124 Cd24a-201ENSMUST00000058714 1816 ntAPPRIS P2 TSL 1 (best) BASIC20.67■□□□□ 0.9
Cln3Q61124 E4f1-205ENSMUST00000226941 2642 ntAPPRIS ALT2 BASIC20.67■□□□□ 0.9
Cln3Q61124 Zbed3-202ENSMUST00000221807 1945 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Cln3Q61124 Alad-202ENSMUST00000107444 1247 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Cln3Q61124 Atox1-201ENSMUST00000108857 541 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Cln3Q61124 Gm14321-201ENSMUST00000127441 632 ntTSL 3 BASIC20.67■□□□□ 0.9
Cln3Q61124 Tlx1os-201ENSMUST00000173437 620 ntTSL 3 BASIC20.67■□□□□ 0.9
Cln3Q61124 Gm26879-201ENSMUST00000181127 1176 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
Cln3Q61124 Gm29994-201ENSMUST00000195495 1193 ntBASIC20.67■□□□□ 0.9
Cln3Q61124 Aqp5-201ENSMUST00000088200 1376 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Cln3Q61124 Ppp1r14c-201ENSMUST00000043374 2617 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Cln3Q61124 Fev-202ENSMUST00000159232 928 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
Cln3Q61124 CT010444.2-201ENSMUST00000217877 1629 ntBASIC20.66■□□□□ 0.9
Cln3Q61124 Nfe2-201ENSMUST00000075192 1697 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Cln3Q61124 Kcnn4-202ENSMUST00000205428 1945 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Cln3Q61124 Fam20b-202ENSMUST00000122424 4532 ntAPPRIS P1 TSL 5 BASIC20.66■□□□□ 0.9
Cln3Q61124 Neurl4-211ENSMUST00000177138 4886 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
Cln3Q61124 Rbm38-204ENSMUST00000173393 2071 ntAPPRIS P1 TSL 5 BASIC20.65■□□□□ 0.9
Cln3Q61124 Slc11a1-211ENSMUST00000187516 1893 ntAPPRIS ALT2 TSL 5 BASIC20.65■□□□□ 0.9
Cln3Q61124 1810055G02Rik-201ENSMUST00000039048 1882 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Cln3Q61124 Hpca-202ENSMUST00000095807 1666 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Cln3Q61124 Espn-208ENSMUST00000105654 1566 ntTSL 5 BASIC20.65■□□□□ 0.9
Cln3Q61124 Rrp9-201ENSMUST00000047721 1586 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Cln3Q61124 Tm7sf2-202ENSMUST00000113543 1498 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
Cln3Q61124 Galk1-201ENSMUST00000021114 1406 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Cln3Q61124 Mir1199-201ENSMUST00000117015 119 ntBASIC20.65■□□□□ 0.9
Cln3Q61124 Gtf2a2-204ENSMUST00000119905 622 ntTSL 2 BASIC20.65■□□□□ 0.9
Cln3Q61124 Cpne1-217ENSMUST00000184265 871 ntTSL 5 BASIC20.65■□□□□ 0.9
Cln3Q61124 Gm37055-201ENSMUST00000191866 133 ntBASIC20.65■□□□□ 0.9
Cln3Q61124 Snapc3-202ENSMUST00000071544 942 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
Cln3Q61124 Map4k3-201ENSMUST00000025089 4225 ntAPPRIS P2 TSL 5 BASIC20.65■□□□□ 0.9
Cln3Q61124 Rap1a-201ENSMUST00000090678 2407 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Cln3Q61124 Ildr2-204ENSMUST00000192732 2263 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
Cln3Q61124 Rab21-201ENSMUST00000020343 4602 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Cln3Q61124 Flot1-201ENSMUST00000001569 1825 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
Cln3Q61124 Clic1-201ENSMUST00000007257 1466 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Cln3Q61124 Klrg2-201ENSMUST00000096030 2276 ntAPPRIS P2 TSL 1 (best) BASIC20.64■□□□□ 0.89
Cln3Q61124 Polr1c-201ENSMUST00000087026 1314 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Cln3Q61124 Cfl1-201ENSMUST00000116560 1148 ntTSL 5 BASIC20.64■□□□□ 0.89
Cln3Q61124 Gm11927-201ENSMUST00000118472 759 ntBASIC20.64■□□□□ 0.89
Cln3Q61124 Gm16127-201ENSMUST00000131619 234 ntTSL 5 BASIC20.64■□□□□ 0.89
Cln3Q61124 Elof1-204ENSMUST00000214394 567 ntAPPRIS P1 TSL 2 BASIC20.64■□□□□ 0.89
Cln3Q61124 Wnt10b-205ENSMUST00000226846 1204 ntBASIC20.64■□□□□ 0.89
Cln3Q61124 Exosc3-201ENSMUST00000030003 1077 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Cln3Q61124 Kat2b-201ENSMUST00000000724 4653 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Cln3Q61124 Rundc3a-202ENSMUST00000107102 1837 ntAPPRIS ALT2 TSL 5 BASIC20.64■□□□□ 0.89
Cln3Q61124 Mtus2-205ENSMUST00000110515 1792 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Cln3Q61124 Map2k2-207ENSMUST00000143517 2405 ntAPPRIS P3 TSL 1 (best) BASIC20.64■□□□□ 0.89
Cln3Q61124 Brsk1-201ENSMUST00000048248 2996 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Cln3Q61124 Dcxr-202ENSMUST00000106148 830 ntTSL 2 BASIC20.63■□□□□ 0.89
Cln3Q61124 Atp5c1-203ENSMUST00000114897 1166 ntAPPRIS P2 TSL 1 (best) BASIC20.63■□□□□ 0.89
Cln3Q61124 2700033N17Rik-201ENSMUST00000140185 721 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
Cln3Q61124 Calu-208ENSMUST00000173694 611 ntTSL 5 BASIC20.63■□□□□ 0.89
Cln3Q61124 Kcnn4-203ENSMUST00000205626 461 ntTSL 5 BASIC20.63■□□□□ 0.89
Cln3Q61124 Arfip2-212ENSMUST00000209550 1141 ntAPPRIS ALT1 TSL 5 BASIC20.63■□□□□ 0.89
Cln3Q61124 Arfip2-214ENSMUST00000210911 938 ntTSL 5 BASIC20.63■□□□□ 0.89
Cln3Q61124 Lbx2-201ENSMUST00000041265 817 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Cln3Q61124 Snx20-201ENSMUST00000034087 1699 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Cln3Q61124 Fam193b-201ENSMUST00000021957 4341 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Cln3Q61124 B4gat1-201ENSMUST00000053705 2035 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Cln3Q61124 K230015D01Rik-201ENSMUST00000211969 1516 ntBASIC20.63■□□□□ 0.89
Cln3Q61124 Mdfi-202ENSMUST00000066368 1711 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Cln3Q61124 Ghrhr-202ENSMUST00000203241 1328 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
Cln3Q61124 Eml2-202ENSMUST00000117338 2765 ntAPPRIS ALT2 TSL 5 BASIC20.62■□□□□ 0.89
Cln3Q61124 Dnajb3-201ENSMUST00000119972 1051 ntAPPRIS P1 BASIC20.62■□□□□ 0.89
Cln3Q61124 D330020A13Rik-201ENSMUST00000181956 1069 ntAPPRIS P1 BASIC20.62■□□□□ 0.89
Cln3Q61124 Gm19610-201ENSMUST00000202894 408 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
Cln3Q61124 Gm45709-201ENSMUST00000213052 1075 ntTSL 5 BASIC20.62■□□□□ 0.89
Cln3Q61124 Mrps12-201ENSMUST00000056078 722 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Cln3Q61124 Bmyc-201ENSMUST00000061483 983 ntAPPRIS P1 BASIC20.62■□□□□ 0.89
Cln3Q61124 Sigmar1-201ENSMUST00000059354 1640 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Cln3Q61124 Txndc15-201ENSMUST00000021959 1527 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Cln3Q61124 Mgarp-202ENSMUST00000108046 1409 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
Cln3Q61124 Spc24-205ENSMUST00000217382 1696 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
Cln3Q61124 Plin1-201ENSMUST00000032762 1916 ntAPPRIS P1 TSL 5 BASIC20.61■□□□□ 0.89
Cln3Q61124 Ngb-201ENSMUST00000021420 1616 ntAPPRIS P3 TSL 1 (best) BASIC20.61■□□□□ 0.89
Cln3Q61124 Cradd-205ENSMUST00000220279 1613 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Cln3Q61124 Scamp4-202ENSMUST00000180350 1271 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Cln3Q61124 Pomc-204ENSMUST00000219543 1043 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Cln3Q61124 C430049E01Rik-201ENSMUST00000207913 1820 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Cln3Q61124 Gm3667-201ENSMUST00000171906 2053 ntAPPRIS P1 TSL 5 BASIC20.61■□□□□ 0.89
Cln3Q61124 Nol9-202ENSMUST00000103197 2271 ntAPPRIS P3 TSL 1 (best) BASIC20.61■□□□□ 0.89
Retrieved 100 of 76,532 protein–RNA pairs in 25.8 ms