Protein–RNA interactions for Protein: Q5QNQ9

Col27a1, Collagen alpha-1(XXVII) chain, mousemouse

Predictions only

Length 1,845 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col27a1Q5QNQ9 Gm15375-201ENSMUST00000119510 849 ntBASIC18.39■□□□□ 0.53
Col27a1Q5QNQ9 Piga-208ENSMUST00000208697 947 ntTSL 5 BASIC18.39■□□□□ 0.53
Col27a1Q5QNQ9 Ly6h-202ENSMUST00000065417 985 ntAPPRIS ALT1 TSL 2 BASIC18.39■□□□□ 0.53
Col27a1Q5QNQ9 Gm7712-202ENSMUST00000222331 1510 ntBASIC18.39■□□□□ 0.53
Col27a1Q5QNQ9 Mindy2-202ENSMUST00000213380 2521 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
Col27a1Q5QNQ9 Igfbp2-201ENSMUST00000047328 1307 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Col27a1Q5QNQ9 Gm32051-202ENSMUST00000197905 2385 ntBASIC18.39■□□□□ 0.53
Col27a1Q5QNQ9 Ankrd33b-203ENSMUST00000110410 2070 ntAPPRIS P3 TSL 1 (best) BASIC18.38■□□□□ 0.53
Col27a1Q5QNQ9 Krt24-201ENSMUST00000017255 1847 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Col27a1Q5QNQ9 Yif1b-203ENSMUST00000108238 1126 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
Col27a1Q5QNQ9 4931413I07Rik-201ENSMUST00000173637 764 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
Col27a1Q5QNQ9 Gm28793-201ENSMUST00000190845 413 ntTSL 5 BASIC18.38■□□□□ 0.53
Col27a1Q5QNQ9 Gm42545-201ENSMUST00000202755 922 ntBASIC18.38■□□□□ 0.53
Col27a1Q5QNQ9 Grtp1-204ENSMUST00000209691 1030 ntTSL 5 BASIC18.38■□□□□ 0.53
Col27a1Q5QNQ9 Foxa2-201ENSMUST00000047315 2128 ntAPPRIS P3 TSL 1 (best) BASIC18.38■□□□□ 0.53
Col27a1Q5QNQ9 Zpbp2-202ENSMUST00000081033 1300 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
Col27a1Q5QNQ9 Trim3-202ENSMUST00000106789 2841 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Col27a1Q5QNQ9 Arpc5-202ENSMUST00000097536 1737 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
Col27a1Q5QNQ9 Galk1-201ENSMUST00000021114 1406 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Col27a1Q5QNQ9 Matk-204ENSMUST00000120265 1618 ntAPPRIS ALT2 TSL 5 BASIC18.37■□□□□ 0.53
Col27a1Q5QNQ9 Nfe2-210ENSMUST00000156927 1608 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
Col27a1Q5QNQ9 Tlcd2-202ENSMUST00000108435 1112 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
Col27a1Q5QNQ9 Nxt1-202ENSMUST00000109961 1116 ntAPPRIS P1 TSL 2 BASIC18.37■□□□□ 0.53
Col27a1Q5QNQ9 Nxt1-201ENSMUST00000047177 956 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Col27a1Q5QNQ9 Pitx2-201ENSMUST00000029657 1680 ntTSL 5 BASIC18.37■□□□□ 0.53
Col27a1Q5QNQ9 Ppm1j-201ENSMUST00000002298 1721 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Col27a1Q5QNQ9 Fip1l1-202ENSMUST00000113534 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
Col27a1Q5QNQ9 Wrnip1-201ENSMUST00000021832 2633 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Col27a1Q5QNQ9 Tm6sf2-202ENSMUST00000110160 1446 ntAPPRIS ALT1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Col27a1Q5QNQ9 Zmym3-207ENSMUST00000120201 1859 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
Col27a1Q5QNQ9 Kcnk15-202ENSMUST00000109396 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
Col27a1Q5QNQ9 Mmp28-204ENSMUST00000119346 1517 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
Col27a1Q5QNQ9 Rchy1-201ENSMUST00000031345 1967 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Col27a1Q5QNQ9 Aebp2-203ENSMUST00000095350 2575 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
Col27a1Q5QNQ9 Zfp821-201ENSMUST00000034163 2127 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Col27a1Q5QNQ9 Tlk2-202ENSMUST00000092537 2743 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
Col27a1Q5QNQ9 Insl6-201ENSMUST00000052380 708 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Col27a1Q5QNQ9 Gtf3a-201ENSMUST00000132102 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
Col27a1Q5QNQ9 Gm9934-201ENSMUST00000098303 2077 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
Col27a1Q5QNQ9 Fbxo44-201ENSMUST00000057907 1829 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Col27a1Q5QNQ9 Tbxa2r-202ENSMUST00000220312 1919 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Col27a1Q5QNQ9 Slc10a3-201ENSMUST00000037967 2023 ntAPPRIS P2 TSL 1 (best) BASIC18.36■□□□□ 0.53
Col27a1Q5QNQ9 Dbndd2-204ENSMUST00000109350 1055 ntAPPRIS P1 TSL 2 BASIC18.36■□□□□ 0.53
Col27a1Q5QNQ9 Tpsg1-201ENSMUST00000024999 1186 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Col27a1Q5QNQ9 Slc35b3-209ENSMUST00000225432 2216 ntAPPRIS P3 BASIC18.36■□□□□ 0.53
Col27a1Q5QNQ9 Ergic3-201ENSMUST00000006035 1377 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Col27a1Q5QNQ9 Zfp821-206ENSMUST00000212964 2033 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
Col27a1Q5QNQ9 Gm19391-201ENSMUST00000196653 999 ntTSL 3 BASIC18.35■□□□□ 0.53
Col27a1Q5QNQ9 Stx3-208ENSMUST00000211641 1018 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
Col27a1Q5QNQ9 Fkbp11-201ENSMUST00000003445 731 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Col27a1Q5QNQ9 Syngr1-202ENSMUST00000009728 819 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
Col27a1Q5QNQ9 Espn-206ENSMUST00000103196 1323 ntTSL 5 BASIC18.35■□□□□ 0.53
Col27a1Q5QNQ9 Pdcd2-205ENSMUST00000154293 1924 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
Col27a1Q5QNQ9 Slbp-201ENSMUST00000057551 1906 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
Col27a1Q5QNQ9 Dlg1-203ENSMUST00000100001 4711 ntAPPRIS ALT2 TSL 5 BASIC18.35■□□□□ 0.53
Col27a1Q5QNQ9 Cklf-208ENSMUST00000212433 1304 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
Col27a1Q5QNQ9 Gtf3a-204ENSMUST00000146511 1298 ntAPPRIS P5 TSL 1 (best) BASIC18.35■□□□□ 0.53
Col27a1Q5QNQ9 AC107452.1-201ENSMUST00000227963 481 ntBASIC18.35■□□□□ 0.53
Col27a1Q5QNQ9 Tm2d1-201ENSMUST00000030292 952 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
Col27a1Q5QNQ9 Pfdn4-201ENSMUST00000063682 935 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Col27a1Q5QNQ9 Cacnb1-203ENSMUST00000103144 2236 ntTSL 5 BASIC18.34■□□□□ 0.53
Col27a1Q5QNQ9 Gm10489-201ENSMUST00000180511 1466 ntTSL 2 BASIC18.34■□□□□ 0.53
Col27a1Q5QNQ9 Iars2-202ENSMUST00000110974 2431 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
Col27a1Q5QNQ9 Pitx2-202ENSMUST00000042587 2271 ntAPPRIS ALT1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Col27a1Q5QNQ9 Gm10138-203ENSMUST00000206952 366 ntBASIC18.34■□□□□ 0.53
Col27a1Q5QNQ9 Prss40-201ENSMUST00000047840 1275 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Col27a1Q5QNQ9 Kcnn4-201ENSMUST00000171904 1990 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Col27a1Q5QNQ9 Tmem86a-201ENSMUST00000010451 1831 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Col27a1Q5QNQ9 Foxp1-225ENSMUST00000177229 1848 ntAPPRIS ALT2 TSL 5 BASIC18.34■□□□□ 0.53
Col27a1Q5QNQ9 Gnas-208ENSMUST00000109087 1716 ntAPPRIS P4 TSL 1 (best) BASIC18.34■□□□□ 0.53
Col27a1Q5QNQ9 Agpat5-201ENSMUST00000033847 2841 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
Col27a1Q5QNQ9 Slc35d3-201ENSMUST00000059805 2630 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
Col27a1Q5QNQ9 Ntng1-204ENSMUST00000106571 1446 ntTSL 5 BASIC18.33■□□□□ 0.53
Col27a1Q5QNQ9 Ntng1-210ENSMUST00000138953 1443 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
Col27a1Q5QNQ9 Gm9774-202ENSMUST00000192538 1392 ntAPPRIS P1 BASIC18.33■□□□□ 0.53
Col27a1Q5QNQ9 P2rx2-201ENSMUST00000058016 1895 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.53
Col27a1Q5QNQ9 Epo-203ENSMUST00000111039 706 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.53
Col27a1Q5QNQ9 Khdc3-204ENSMUST00000173734 1228 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.53
Col27a1Q5QNQ9 Ddah2-204ENSMUST00000174493 1254 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
Col27a1Q5QNQ9 Cyp2u1-203ENSMUST00000200236 1716 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
Col27a1Q5QNQ9 Exoc3l2-201ENSMUST00000011407 2200 ntTSL 5 BASIC18.33■□□□□ 0.52
Col27a1Q5QNQ9 Slc39a7-203ENSMUST00000169397 2107 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.52
Col27a1Q5QNQ9 Tfap2e-201ENSMUST00000048194 2085 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Col27a1Q5QNQ9 E030044B06Rik-201ENSMUST00000181195 1266 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
Col27a1Q5QNQ9 Stard3nl-208ENSMUST00000200323 1128 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
Col27a1Q5QNQ9 Gm36736-201ENSMUST00000206060 646 ntTSL 3 BASIC18.33■□□□□ 0.52
Col27a1Q5QNQ9 Catsper2-201ENSMUST00000038073 2247 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Col27a1Q5QNQ9 Fam57a-201ENSMUST00000094014 2130 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Col27a1Q5QNQ9 Ctage5-203ENSMUST00000170992 2785 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
Col27a1Q5QNQ9 Acot7-201ENSMUST00000030779 1425 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
Col27a1Q5QNQ9 Auh-201ENSMUST00000021913 1320 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Col27a1Q5QNQ9 Hat1-202ENSMUST00000112122 1899 ntAPPRIS ALT2 TSL 5 BASIC18.32■□□□□ 0.52
Col27a1Q5QNQ9 Arnt-204ENSMUST00000107160 783 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
Col27a1Q5QNQ9 Ndufb11-201ENSMUST00000116621 908 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Col27a1Q5QNQ9 Cldn18-203ENSMUST00000131922 860 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
Col27a1Q5QNQ9 Gm16192-201ENSMUST00000148357 937 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
Col27a1Q5QNQ9 Ccdc125-202ENSMUST00000170347 1216 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
Col27a1Q5QNQ9 Hint2-201ENSMUST00000030192 610 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Col27a1Q5QNQ9 Atoh8-201ENSMUST00000042646 2355 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Col27a1Q5QNQ9 Impdh1-201ENSMUST00000078155 2437 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Retrieved 100 of 76,532 protein–RNA pairs in 24.4 ms