Protein–RNA interactions for Protein: Q3U319

Rnf40, E3 ubiquitin-protein ligase BRE1B, mousemouse

Predictions only

Length 1,001 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rnf40Q3U319 Rsph6a-201ENSMUST00000035521 2354 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Rnf40Q3U319 Ostm1-201ENSMUST00000040718 3006 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Rnf40Q3U319 Zbtb9-201ENSMUST00000120016 2798 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Rnf40Q3U319 Fam172a-202ENSMUST00000099358 2242 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
Rnf40Q3U319 Tsc22d1-203ENSMUST00000101618 1043 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
Rnf40Q3U319 Gm16464-201ENSMUST00000117815 1095 ntBASIC19.42■□□□□ 0.7
Rnf40Q3U319 Ybx2-205ENSMUST00000149194 1235 ntTSL 5 BASIC19.42■□□□□ 0.7
Rnf40Q3U319 AC161180.1-201ENSMUST00000223439 933 ntAPPRIS P1 BASIC19.42■□□□□ 0.7
Rnf40Q3U319 Gnas-222ENSMUST00000180362 1645 ntTSL 5 BASIC19.42■□□□□ 0.7
Rnf40Q3U319 Fuz-201ENSMUST00000071207 1698 ntAPPRIS P2 TSL 1 (best) BASIC19.42■□□□□ 0.7
Rnf40Q3U319 Trim68-201ENSMUST00000082175 2388 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Rnf40Q3U319 Icmt-201ENSMUST00000048892 4919 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Rnf40Q3U319 Slc16a3-201ENSMUST00000070653 2272 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Rnf40Q3U319 Csnk1a1-206ENSMUST00000165721 2323 ntAPPRIS ALT1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Rnf40Q3U319 Actl6a-201ENSMUST00000029214 2010 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Rnf40Q3U319 Tomm40-201ENSMUST00000032555 1646 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Rnf40Q3U319 Zfp346-203ENSMUST00000159278 1253 ntAPPRIS ALT2 TSL 5 BASIC19.41■□□□□ 0.7
Rnf40Q3U319 Mpped1-208ENSMUST00000163723 1064 ntTSL 5 BASIC19.41■□□□□ 0.7
Rnf40Q3U319 Tarbp1-201ENSMUST00000170518 6383 ntAPPRIS P1 TSL 5 BASIC19.41■□□□□ 0.7
Rnf40Q3U319 Psmd3-201ENSMUST00000017365 2148 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Rnf40Q3U319 Cnih2-201ENSMUST00000025805 1237 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Rnf40Q3U319 H1fx-201ENSMUST00000056403 1217 ntAPPRIS P1 BASIC19.41■□□□□ 0.7
Rnf40Q3U319 Lzts2-201ENSMUST00000039016 2825 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Rnf40Q3U319 Prdm8-201ENSMUST00000112959 4553 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Rnf40Q3U319 Rmnd1-201ENSMUST00000042251 3139 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Rnf40Q3U319 Map7-201ENSMUST00000020173 4252 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
Rnf40Q3U319 Osgin2-201ENSMUST00000037198 2658 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Rnf40Q3U319 Espn-203ENSMUST00000070018 1618 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
Rnf40Q3U319 Gm29514-202ENSMUST00000186665 2214 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
Rnf40Q3U319 Fam131a-202ENSMUST00000118919 2262 ntTSL 5 BASIC19.4■□□□□ 0.7
Rnf40Q3U319 Pdxdc1-202ENSMUST00000115802 2466 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
Rnf40Q3U319 Wipf1-201ENSMUST00000094681 4728 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Rnf40Q3U319 Matn4-202ENSMUST00000103104 2243 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Rnf40Q3U319 Appl2-201ENSMUST00000020500 3020 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Rnf40Q3U319 Fgf4-201ENSMUST00000060336 3030 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Rnf40Q3U319 Vapa-201ENSMUST00000024897 1640 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Rnf40Q3U319 Mfhas1-201ENSMUST00000037666 6408 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
Rnf40Q3U319 Epn1-207ENSMUST00000208634 2127 ntAPPRIS ALT2 TSL 5 BASIC19.39■□□□□ 0.69
Rnf40Q3U319 6030419C18Rik-201ENSMUST00000085658 2139 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Rnf40Q3U319 Prdm6-203ENSMUST00000115399 2227 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
Rnf40Q3U319 Coq8b-202ENSMUST00000108378 2276 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Rnf40Q3U319 Dlgap1-206ENSMUST00000133717 2355 ntAPPRIS ALT2 TSL 5 BASIC19.39■□□□□ 0.69
Rnf40Q3U319 Cited4-201ENSMUST00000094814 1249 ntAPPRIS P1 BASIC19.39■□□□□ 0.69
Rnf40Q3U319 Lmo2-208ENSMUST00000170926 1529 ntAPPRIS P1 TSL 2 BASIC19.39■□□□□ 0.69
Rnf40Q3U319 Smarca4-202ENSMUST00000098948 6376 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
Rnf40Q3U319 Krcc1-203ENSMUST00000204436 1687 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Rnf40Q3U319 Rem1-201ENSMUST00000000369 1663 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Rnf40Q3U319 Mcl1-201ENSMUST00000037947 3418 ntAPPRIS P2 TSL 1 (best) BASIC19.39■□□□□ 0.69
Rnf40Q3U319 Smim15-205ENSMUST00000225972 2097 ntAPPRIS P1 BASIC19.39■□□□□ 0.69
Rnf40Q3U319 Fam104a-201ENSMUST00000120194 2619 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Rnf40Q3U319 Chst1-201ENSMUST00000065797 2680 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Rnf40Q3U319 Hps4-201ENSMUST00000035279 2836 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Rnf40Q3U319 Rps6ka1-202ENSMUST00000105894 3135 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Rnf40Q3U319 Tnk1-202ENSMUST00000108626 1798 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
Rnf40Q3U319 Apbb1-214ENSMUST00000189378 2878 ntAPPRIS ALT1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Rnf40Q3U319 Gm10399-202ENSMUST00000202768 748 ntBASIC19.38■□□□□ 0.69
Rnf40Q3U319 Metap1-201ENSMUST00000029804 2686 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Rnf40Q3U319 Atp11a-202ENSMUST00000091237 7443 ntAPPRIS P3 TSL 1 (best) BASIC19.38■□□□□ 0.69
Rnf40Q3U319 Rasgrp2-224ENSMUST00000167240 2192 ntAPPRIS P1 TSL 5 BASIC19.37■□□□□ 0.69
Rnf40Q3U319 Lysmd4-209ENSMUST00000208998 2110 ntAPPRIS P2 TSL 1 (best) BASIC19.37■□□□□ 0.69
Rnf40Q3U319 Fam46c-201ENSMUST00000061455 5640 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Rnf40Q3U319 Cdc14b-203ENSMUST00000109770 3052 ntAPPRIS P3 TSL 1 (best) BASIC19.37■□□□□ 0.69
Rnf40Q3U319 Fbxl3-201ENSMUST00000022720 4309 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Rnf40Q3U319 Gm43530-201ENSMUST00000195920 274 ntBASIC19.37■□□□□ 0.69
Rnf40Q3U319 Dctpp1-201ENSMUST00000035276 676 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Rnf40Q3U319 Map3k10-201ENSMUST00000036453 3682 ntAPPRIS P2 TSL 1 (best) BASIC19.37■□□□□ 0.69
Rnf40Q3U319 Eif2b5-201ENSMUST00000003320 3186 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Rnf40Q3U319 Rnf26-208ENSMUST00000185479 2964 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Rnf40Q3U319 Msl1-204ENSMUST00000107487 2836 ntAPPRIS ALT2 TSL 2 BASIC19.37■□□□□ 0.69
Rnf40Q3U319 Il4i1-202ENSMUST00000118125 2275 ntAPPRIS ALT2 TSL 2 BASIC19.36■□□□□ 0.69
Rnf40Q3U319 Icam5-201ENSMUST00000019616 2947 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Rnf40Q3U319 Atrnl1-201ENSMUST00000077282 6581 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Rnf40Q3U319 A430057M04Rik-202ENSMUST00000170150 2176 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
Rnf40Q3U319 Rrbp1-202ENSMUST00000037875 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
Rnf40Q3U319 Rcn1-201ENSMUST00000006128 2720 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Rnf40Q3U319 Gm10420-201ENSMUST00000121713 882 ntBASIC19.36■□□□□ 0.69
Rnf40Q3U319 Efna3-203ENSMUST00000200436 742 ntAPPRIS ALT2 TSL 5 BASIC19.36■□□□□ 0.69
Rnf40Q3U319 A930017K11Rik-201ENSMUST00000162431 2539 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Rnf40Q3U319 Sobp-201ENSMUST00000040275 4980 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Rnf40Q3U319 Fcho2-208ENSMUST00000224992 2964 ntBASIC19.36■□□□□ 0.69
Rnf40Q3U319 Hnrnpul2-201ENSMUST00000096753 5726 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Rnf40Q3U319 Sgsm1-204ENSMUST00000112325 2274 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
Rnf40Q3U319 Mroh5-201ENSMUST00000071419 2766 ntAPPRIS P2 TSL 1 (best) BASIC19.36■□□□□ 0.69
Rnf40Q3U319 Ppm1b-202ENSMUST00000112304 3262 ntAPPRIS P3 TSL 1 (best) BASIC19.36■□□□□ 0.69
Rnf40Q3U319 Chmp6-201ENSMUST00000026434 1557 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Rnf40Q3U319 Rap2a-201ENSMUST00000062117 4191 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Rnf40Q3U319 Vamp4-204ENSMUST00000135241 1461 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Rnf40Q3U319 Ppp2r5d-201ENSMUST00000002839 2926 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Rnf40Q3U319 Tmem127-201ENSMUST00000035871 4811 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Rnf40Q3U319 Fam216a-201ENSMUST00000031419 1388 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Rnf40Q3U319 Gm26689-201ENSMUST00000180927 1818 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
Rnf40Q3U319 Gm26553-201ENSMUST00000181531 1818 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
Rnf40Q3U319 Fam71b-201ENSMUST00000063166 2185 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Rnf40Q3U319 Zfp703-201ENSMUST00000127097 587 ntTSL 2 BASIC19.35■□□□□ 0.69
Rnf40Q3U319 Aldoa-214ENSMUST00000207534 741 ntAPPRIS P1 TSL 5 BASIC19.35■□□□□ 0.69
Rnf40Q3U319 Xxylt1-201ENSMUST00000055389 2987 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Rnf40Q3U319 Msx2-201ENSMUST00000021922 2453 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Rnf40Q3U319 Zcchc6-207ENSMUST00000225576 2499 ntBASIC19.35■□□□□ 0.69
Rnf40Q3U319 Actl6b-205ENSMUST00000139395 1592 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Rnf40Q3U319 Rassf8-203ENSMUST00000111704 5446 ntAPPRIS P1 TSL 5 BASIC19.35■□□□□ 0.69
Retrieved 100 of 76,532 protein–RNA pairs in 23.7 ms