Protein–RNA interactions for Protein: Q3U1J4

Ddb1, DNA damage-binding protein 1, mousemouse

Known RBP Predictions only

Length 1,140 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddb1Q3U1J4 Tbxa2r-202ENSMUST00000220312 1919 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.44
Ddb1Q3U1J4 Drd4-201ENSMUST00000026569 2799 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.44
Ddb1Q3U1J4 Ankdd1a-201ENSMUST00000061766 1443 ntAPPRIS ALT2 TSL 5 BASIC24.01■■□□□ 1.43
Ddb1Q3U1J4 Insc-208ENSMUST00000169913 2321 ntAPPRIS P1 TSL 5 BASIC24.01■■□□□ 1.43
Ddb1Q3U1J4 E030030I06Rik-202ENSMUST00000179054 2081 ntAPPRIS P4 TSL 1 (best) BASIC24.01■■□□□ 1.43
Ddb1Q3U1J4 Fam60a-202ENSMUST00000081956 2737 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.43
Ddb1Q3U1J4 Nkx2-2-203ENSMUST00000109970 1053 ntTSL 1 (best) BASIC24.01■■□□□ 1.43
Ddb1Q3U1J4 Zfp428-203ENSMUST00000177205 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC24.01■■□□□ 1.43
Ddb1Q3U1J4 Gm16042-201ENSMUST00000204813 1247 ntBASIC24.01■■□□□ 1.43
Ddb1Q3U1J4 Cib1-207ENSMUST00000206084 772 ntTSL 3 BASIC24.01■■□□□ 1.43
Ddb1Q3U1J4 Cib1-202ENSMUST00000071457 702 ntTSL 1 (best) BASIC24.01■■□□□ 1.43
Ddb1Q3U1J4 Pitx2-202ENSMUST00000042587 2271 ntAPPRIS ALT1 TSL 1 (best) BASIC24.01■■□□□ 1.43
Ddb1Q3U1J4 Nanp-201ENSMUST00000066640 1394 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.43
Ddb1Q3U1J4 Gm16386-201ENSMUST00000181397 1423 ntTSL 1 (best) BASIC24.01■■□□□ 1.43
Ddb1Q3U1J4 Kcnk15-202ENSMUST00000109396 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC24■■□□□ 1.43
Ddb1Q3U1J4 Acss2-203ENSMUST00000103142 2145 ntTSL 5 BASIC24■■□□□ 1.43
Ddb1Q3U1J4 Lsm1-203ENSMUST00000211168 343 ntTSL 3 BASIC24■■□□□ 1.43
Ddb1Q3U1J4 Fkbp3-201ENSMUST00000021332 1022 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.43
Ddb1Q3U1J4 Gm32151-201ENSMUST00000223521 915 ntTSL 5 BASIC24■■□□□ 1.43
Ddb1Q3U1J4 Thap3-201ENSMUST00000036680 1124 ntAPPRIS P3 TSL 1 (best) BASIC24■■□□□ 1.43
Ddb1Q3U1J4 Slc35d3-201ENSMUST00000059805 2630 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.43
Ddb1Q3U1J4 Fbxo44-201ENSMUST00000057907 1829 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.43
Ddb1Q3U1J4 Fam168b-203ENSMUST00000167518 5058 ntTSL 5 BASIC24■■□□□ 1.43
Ddb1Q3U1J4 Samd8-201ENSMUST00000022292 1574 ntAPPRIS P2 TSL 1 (best) BASIC23.99■■□□□ 1.43
Ddb1Q3U1J4 Efna4-201ENSMUST00000029674 1599 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
Ddb1Q3U1J4 Cotl1-201ENSMUST00000034285 1596 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
Ddb1Q3U1J4 Ttc7b-201ENSMUST00000062957 3446 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
Ddb1Q3U1J4 Inhbb-201ENSMUST00000038765 4255 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
Ddb1Q3U1J4 Tmem80-202ENSMUST00000126510 959 ntAPPRIS P1 TSL 5 BASIC23.99■■□□□ 1.43
Ddb1Q3U1J4 4930579K19Rik-202ENSMUST00000190541 632 ntTSL 2 BASIC23.99■■□□□ 1.43
Ddb1Q3U1J4 Mtag2-201ENSMUST00000058665 714 ntBASIC23.99■■□□□ 1.43
Ddb1Q3U1J4 Cdc42bpb-201ENSMUST00000041965 6714 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
Ddb1Q3U1J4 Rpl18-ps2-201ENSMUST00000118863 567 ntBASIC23.98■■□□□ 1.43
Ddb1Q3U1J4 Gm11539-201ENSMUST00000119837 557 ntBASIC23.98■■□□□ 1.43
Ddb1Q3U1J4 Gm13436-201ENSMUST00000120418 567 ntBASIC23.98■■□□□ 1.43
Ddb1Q3U1J4 Dusp13-213ENSMUST00000184703 902 ntAPPRIS ALT1 TSL 5 BASIC23.98■■□□□ 1.43
Ddb1Q3U1J4 Grin2d-201ENSMUST00000002848 5431 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
Ddb1Q3U1J4 Guca1b-202ENSMUST00000145462 1556 ntTSL 2 BASIC23.98■■□□□ 1.43
Ddb1Q3U1J4 Anks3-201ENSMUST00000023157 2483 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
Ddb1Q3U1J4 Sphk1-203ENSMUST00000100201 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC23.97■■□□□ 1.43
Ddb1Q3U1J4 Fip1l1-202ENSMUST00000113534 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC23.97■■□□□ 1.43
Ddb1Q3U1J4 Siglecf-202ENSMUST00000121494 1572 ntAPPRIS ALT2 TSL 1 (best) BASIC23.97■■□□□ 1.43
Ddb1Q3U1J4 Gm19391-201ENSMUST00000196653 999 ntTSL 3 BASIC23.97■■□□□ 1.43
Ddb1Q3U1J4 Tpra1-223ENSMUST00000204765 1738 ntAPPRIS P1 TSL 1 (best) BASIC23.97■■□□□ 1.43
Ddb1Q3U1J4 Pus1-201ENSMUST00000031481 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC23.97■■□□□ 1.43
Ddb1Q3U1J4 Alg5-201ENSMUST00000044567 1471 ntAPPRIS P1 TSL 1 (best) BASIC23.97■■□□□ 1.43
Ddb1Q3U1J4 Pdgfa-201ENSMUST00000046901 1543 ntTSL 1 (best) BASIC23.96■■□□□ 1.43
Ddb1Q3U1J4 Fam229a-201ENSMUST00000106043 558 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
Ddb1Q3U1J4 Arl4aos-201ENSMUST00000135883 748 ntTSL 1 (best) BASIC23.96■■□□□ 1.43
Ddb1Q3U1J4 Bcl7c-205ENSMUST00000205977 891 ntTSL 2 BASIC23.96■■□□□ 1.43
Ddb1Q3U1J4 Bpnt1-202ENSMUST00000110965 1046 ntTSL 1 (best) BASIC23.95■■□□□ 1.42
Ddb1Q3U1J4 Prickle4-201ENSMUST00000113299 990 ntTSL 5 BASIC23.95■■□□□ 1.42
Ddb1Q3U1J4 Prickle4-202ENSMUST00000113300 1110 ntAPPRIS P1 TSL 5 BASIC23.95■■□□□ 1.42
Ddb1Q3U1J4 D3Ertd751e-205ENSMUST00000120167 773 ntAPPRIS ALT2 TSL 5 BASIC23.95■■□□□ 1.42
Ddb1Q3U1J4 Bola2-203ENSMUST00000130498 1266 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.42
Ddb1Q3U1J4 Gm7889-201ENSMUST00000185591 958 ntBASIC23.95■■□□□ 1.42
Ddb1Q3U1J4 AC156016.1-201ENSMUST00000227190 1035 ntBASIC23.95■■□□□ 1.42
Ddb1Q3U1J4 3110070M22Rik-201ENSMUST00000099148 1123 ntAPPRIS P1 BASIC23.95■■□□□ 1.42
Ddb1Q3U1J4 Rasgrf2-206ENSMUST00000216219 2115 ntTSL 5 BASIC23.95■■□□□ 1.42
Ddb1Q3U1J4 D16Ertd472e-202ENSMUST00000114219 1576 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.42
Ddb1Q3U1J4 St3gal4-201ENSMUST00000034537 2095 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.42
Ddb1Q3U1J4 Stoml1-201ENSMUST00000034883 1984 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
Ddb1Q3U1J4 Map3k15-201ENSMUST00000033665 4348 ntAPPRIS P1 TSL 5 BASIC23.94■■□□□ 1.42
Ddb1Q3U1J4 AC124581.1-201ENSMUST00000225416 1399 ntBASIC23.94■■□□□ 1.42
Ddb1Q3U1J4 Mpst-203ENSMUST00000169133 1309 ntAPPRIS P1 TSL 5 BASIC23.94■■□□□ 1.42
Ddb1Q3U1J4 A430033K04Rik-204ENSMUST00000200521 1110 ntTSL 1 (best) BASIC23.94■■□□□ 1.42
Ddb1Q3U1J4 Mrpl28-201ENSMUST00000025014 1048 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
Ddb1Q3U1J4 Pfdn6-201ENSMUST00000025163 807 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
Ddb1Q3U1J4 A430033K04Rik-201ENSMUST00000032590 1109 ntTSL 5 BASIC23.94■■□□□ 1.42
Ddb1Q3U1J4 Esx1-201ENSMUST00000074698 1600 ntAPPRIS P2 TSL 1 (best) BASIC23.94■■□□□ 1.42
Ddb1Q3U1J4 Gramd1a-202ENSMUST00000085636 2543 ntAPPRIS ALT2 TSL 5 BASIC23.93■■□□□ 1.42
Ddb1Q3U1J4 Acot7-201ENSMUST00000030779 1425 ntAPPRIS ALT2 TSL 1 (best) BASIC23.93■■□□□ 1.42
Ddb1Q3U1J4 Nbl1-201ENSMUST00000042844 1793 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
Ddb1Q3U1J4 Iscu-202ENSMUST00000112311 1395 ntTSL 2 BASIC23.93■■□□□ 1.42
Ddb1Q3U1J4 Klhl15-205ENSMUST00000113916 2363 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
Ddb1Q3U1J4 B430319F04Rik-201ENSMUST00000209731 2669 ntBASIC23.93■■□□□ 1.42
Ddb1Q3U1J4 Wdr74-202ENSMUST00000210512 1078 ntTSL 1 (best) BASIC23.93■■□□□ 1.42
Ddb1Q3U1J4 Tollip-202ENSMUST00000055819 1100 ntTSL 1 (best) BASIC23.93■■□□□ 1.42
Ddb1Q3U1J4 Ppp3ca-201ENSMUST00000056758 2194 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
Ddb1Q3U1J4 Stau2-201ENSMUST00000027052 2763 ntTSL 1 (best) BASIC23.93■■□□□ 1.42
Ddb1Q3U1J4 Clic1-201ENSMUST00000007257 1466 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
Ddb1Q3U1J4 Trim14-201ENSMUST00000046897 1429 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
Ddb1Q3U1J4 Snx15-201ENSMUST00000025702 1635 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
Ddb1Q3U1J4 Fam193b-201ENSMUST00000021957 4341 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
Ddb1Q3U1J4 Ubl4a-206ENSMUST00000155676 2442 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
Ddb1Q3U1J4 1700025A08Rik-201ENSMUST00000200753 609 ntBASIC23.92■■□□□ 1.42
Ddb1Q3U1J4 Gm42882-201ENSMUST00000201788 506 ntTSL 3 BASIC23.92■■□□□ 1.42
Ddb1Q3U1J4 Zcchc13-201ENSMUST00000033692 1085 ntAPPRIS P1 BASIC23.92■■□□□ 1.42
Ddb1Q3U1J4 Bricd5-201ENSMUST00000054946 997 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
Ddb1Q3U1J4 Cldn24-201ENSMUST00000079639 663 ntAPPRIS P1 BASIC23.92■■□□□ 1.42
Ddb1Q3U1J4 Birc5-201ENSMUST00000081387 947 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
Ddb1Q3U1J4 3110053B16Rik-202ENSMUST00000140360 2004 ntTSL 1 (best) BASIC23.91■■□□□ 1.42
Ddb1Q3U1J4 Gpr137-203ENSMUST00000099776 1569 ntTSL 1 (best) BASIC23.91■■□□□ 1.42
Ddb1Q3U1J4 Actr5-201ENSMUST00000045644 2402 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
Ddb1Q3U1J4 D11Wsu47e-201ENSMUST00000042227 2196 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
Ddb1Q3U1J4 Uba2-201ENSMUST00000102746 2579 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
Ddb1Q3U1J4 Naa10-205ENSMUST00000114390 797 ntTSL 5 BASIC23.91■■□□□ 1.42
Ddb1Q3U1J4 Mir142hg-201ENSMUST00000123700 269 ntTSL 1 (best) BASIC23.91■■□□□ 1.42
Ddb1Q3U1J4 Gm6728-201ENSMUST00000178117 1065 ntBASIC23.91■■□□□ 1.42
Ddb1Q3U1J4 Gadd45b-203ENSMUST00000220246 732 ntTSL 2 BASIC23.91■■□□□ 1.42
Retrieved 100 of 76,532 protein–RNA pairs in 18.9 ms