Protein–RNA interactions for Protein: Q04887

Sox9, Transcription factor SOX-9, mousemouse

Predictions only

Length 507 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sox9Q04887 Slc35f4-201ENSMUST00000074368 1931 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Sox9Q04887 Gm13559-201ENSMUST00000120476 863 ntBASIC19.43■□□□□ 0.7
Sox9Q04887 Gm5577-203ENSMUST00000153372 815 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
Sox9Q04887 Gm21814-202ENSMUST00000203277 873 ntBASIC19.43■□□□□ 0.7
Sox9Q04887 Nfu1-201ENSMUST00000032060 948 ntAPPRIS P3 TSL 1 (best) BASIC19.43■□□□□ 0.7
Sox9Q04887 Schip1-206ENSMUST00000182719 2156 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
Sox9Q04887 Otud5-203ENSMUST00000115666 2471 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
Sox9Q04887 Acsl3-203ENSMUST00000134566 2492 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
Sox9Q04887 Trp73os-201ENSMUST00000143429 2192 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
Sox9Q04887 Srsf10-203ENSMUST00000102544 2225 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
Sox9Q04887 Gm15138-201ENSMUST00000151778 379 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
Sox9Q04887 Gm20033-201ENSMUST00000180470 572 ntTSL 3 BASIC19.42■□□□□ 0.7
Sox9Q04887 Arhgef4-208ENSMUST00000211073 171 ntBASIC19.42■□□□□ 0.7
Sox9Q04887 Gm18101-201ENSMUST00000215769 548 ntBASIC19.42■□□□□ 0.7
Sox9Q04887 Uchl3-201ENSMUST00000002289 903 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Sox9Q04887 Mcrip2-201ENSMUST00000026828 816 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Sox9Q04887 Hsbp1-201ENSMUST00000034300 1208 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Sox9Q04887 3110070M22Rik-201ENSMUST00000099148 1123 ntAPPRIS P1 BASIC19.42■□□□□ 0.7
Sox9Q04887 Tbxa2r-202ENSMUST00000220312 1919 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Sox9Q04887 Gtpbp2-217ENSMUST00000172170 2587 ntTSL 5 BASIC19.42■□□□□ 0.7
Sox9Q04887 Pcgf6-201ENSMUST00000026032 2098 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Sox9Q04887 Eml2-202ENSMUST00000117338 2765 ntAPPRIS ALT2 TSL 5 BASIC19.42■□□□□ 0.7
Sox9Q04887 Bin1-201ENSMUST00000025239 2451 ntAPPRIS P3 TSL 2 BASIC19.42■□□□□ 0.7
Sox9Q04887 Tcerg1l-201ENSMUST00000160436 2565 ntAPPRIS P1 TSL 5 BASIC19.41■□□□□ 0.7
Sox9Q04887 AC165249.1-201ENSMUST00000220031 1599 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
Sox9Q04887 Hoxc11-201ENSMUST00000001701 2021 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Sox9Q04887 Brd1-203ENSMUST00000109381 4886 ntTSL 5 BASIC19.41■□□□□ 0.7
Sox9Q04887 Trpc1-201ENSMUST00000053785 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
Sox9Q04887 Mrpl9-202ENSMUST00000196143 1657 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
Sox9Q04887 Meis3-201ENSMUST00000002495 1731 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Sox9Q04887 Snrnp70-201ENSMUST00000074575 1735 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Sox9Q04887 Fam193b-201ENSMUST00000021957 4341 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Sox9Q04887 Espn-204ENSMUST00000080042 1402 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
Sox9Q04887 Rnaset2b-202ENSMUST00000179728 2448 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Sox9Q04887 Sox17-208ENSMUST00000195555 1977 ntTSL 5 BASIC19.41■□□□□ 0.7
Sox9Q04887 Magi2-201ENSMUST00000088516 4843 ntAPPRIS P2 TSL 5 BASIC19.4■□□□□ 0.7
Sox9Q04887 9430060I03Rik-201ENSMUST00000191563 1689 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
Sox9Q04887 Ccdc149-202ENSMUST00000198008 2470 ntTSL 5 BASIC19.4■□□□□ 0.7
Sox9Q04887 Zdhhc12-202ENSMUST00000102865 1165 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Sox9Q04887 Atp5g1-203ENSMUST00000107686 691 ntAPPRIS P1 TSL 3 BASIC19.4■□□□□ 0.7
Sox9Q04887 9130019P16Rik-201ENSMUST00000135612 1019 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
Sox9Q04887 Gm20635-201ENSMUST00000176473 1287 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
Sox9Q04887 Gm37939-201ENSMUST00000192309 447 ntTSL 5 BASIC19.4■□□□□ 0.7
Sox9Q04887 Gabarapl1-202ENSMUST00000204487 902 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
Sox9Q04887 Cib1-207ENSMUST00000206084 772 ntTSL 3 BASIC19.4■□□□□ 0.7
Sox9Q04887 Fkbp3-201ENSMUST00000021332 1022 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Sox9Q04887 Gfra4-202ENSMUST00000066958 783 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
Sox9Q04887 Cib1-202ENSMUST00000071457 702 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
Sox9Q04887 9130221H12Rik-201ENSMUST00000169914 1465 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
Sox9Q04887 Vmn1r17-205ENSMUST00000228342 2230 ntAPPRIS P2 BASIC19.4■□□□□ 0.7
Sox9Q04887 Atf5-202ENSMUST00000107893 1735 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
Sox9Q04887 Gse1-203ENSMUST00000120493 4610 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.7
Sox9Q04887 Wipi2-202ENSMUST00000110778 1959 ntAPPRIS P1 TSL 5 BASIC19.39■□□□□ 0.7
Sox9Q04887 Cdkl3-202ENSMUST00000063321 2008 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
Sox9Q04887 Picalm-212ENSMUST00000208730 3427 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
Sox9Q04887 Rpl18-ps2-201ENSMUST00000118863 567 ntBASIC19.39■□□□□ 0.69
Sox9Q04887 Gm11539-201ENSMUST00000119837 557 ntBASIC19.39■□□□□ 0.69
Sox9Q04887 Gm13436-201ENSMUST00000120418 567 ntBASIC19.39■□□□□ 0.69
Sox9Q04887 Zmynd19-202ENSMUST00000148042 1103 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
Sox9Q04887 Rcbtb2-217ENSMUST00000167401 868 ntTSL 5 BASIC19.39■□□□□ 0.69
Sox9Q04887 Stard6-203ENSMUST00000168249 1167 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Sox9Q04887 4930465K10Rik-201ENSMUST00000056675 1238 ntBASIC19.39■□□□□ 0.69
Sox9Q04887 A330009N23Rik-201ENSMUST00000180639 1392 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
Sox9Q04887 Cnrip1-201ENSMUST00000058159 1654 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Sox9Q04887 Gm43672-201ENSMUST00000199072 1731 ntBASIC19.39■□□□□ 0.69
Sox9Q04887 5033417F24Rik-201ENSMUST00000181575 1787 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
Sox9Q04887 Zfp36l1-202ENSMUST00000165114 1934 ntAPPRIS P1 TSL 5 BASIC19.39■□□□□ 0.69
Sox9Q04887 2700081O15Rik-202ENSMUST00000159348 4989 ntAPPRIS P1 TSL 5 BASIC19.39■□□□□ 0.69
Sox9Q04887 Sec22c-202ENSMUST00000111560 2669 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Sox9Q04887 Kcnc3-201ENSMUST00000107906 5062 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
Sox9Q04887 Gm7889-201ENSMUST00000185591 958 ntBASIC19.38■□□□□ 0.69
Sox9Q04887 Trappc6a-201ENSMUST00000002112 785 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Sox9Q04887 Efcc1-201ENSMUST00000032132 2729 ntAPPRIS ALT2 TSL 5 BASIC19.38■□□□□ 0.69
Sox9Q04887 Ergic3-202ENSMUST00000088650 1349 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
Sox9Q04887 Wtap-204ENSMUST00000159986 3187 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
Sox9Q04887 Zfp3-201ENSMUST00000060444 2061 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Sox9Q04887 Dtnb-210ENSMUST00000173199 2820 ntAPPRIS ALT2 TSL 5 BASIC19.37■□□□□ 0.69
Sox9Q04887 4930405A21Rik-202ENSMUST00000139042 994 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
Sox9Q04887 Prss16-204ENSMUST00000150547 1159 ntTSL 3 BASIC19.37■□□□□ 0.69
Sox9Q04887 Gm28793-201ENSMUST00000190845 413 ntTSL 5 BASIC19.37■□□□□ 0.69
Sox9Q04887 Gadd45b-203ENSMUST00000220246 732 ntTSL 2 BASIC19.37■□□□□ 0.69
Sox9Q04887 Banf1-201ENSMUST00000025762 735 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Sox9Q04887 Cst3-201ENSMUST00000028938 860 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Sox9Q04887 Hist1h2aj-201ENSMUST00000091710 352 ntBASIC19.37■□□□□ 0.69
Sox9Q04887 Gm10125-201ENSMUST00000074702 2286 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
Sox9Q04887 Nkx2-1-202ENSMUST00000178477 2242 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Sox9Q04887 Sost-201ENSMUST00000001534 2066 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Sox9Q04887 Map4k3-201ENSMUST00000025089 4225 ntAPPRIS P2 TSL 5 BASIC19.36■□□□□ 0.69
Sox9Q04887 Cbln2-201ENSMUST00000068423 2475 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Sox9Q04887 Zmym3-202ENSMUST00000117637 1593 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
Sox9Q04887 Mpst-203ENSMUST00000169133 1309 ntAPPRIS P1 TSL 5 BASIC19.36■□□□□ 0.69
Sox9Q04887 Nkx2-2-203ENSMUST00000109970 1053 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
Sox9Q04887 Scamp4-202ENSMUST00000180350 1271 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Sox9Q04887 Gm4316-202ENSMUST00000212490 1115 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
Sox9Q04887 AC140264.2-202ENSMUST00000218746 817 ntBASIC19.36■□□□□ 0.69
Sox9Q04887 Gm4969-202ENSMUST00000141380 1892 ntAPPRIS P1 TSL 5 BASIC19.36■□□□□ 0.69
Sox9Q04887 Osbpl2-201ENSMUST00000040668 2805 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Sox9Q04887 Grina-201ENSMUST00000023225 1693 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Sox9Q04887 Prkab1-201ENSMUST00000031486 2089 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Sox9Q04887 Maf-202ENSMUST00000109104 6360 ntAPPRIS P2 BASIC19.35■□□□□ 0.69
Retrieved 100 of 76,532 protein–RNA pairs in 23.9 ms