Protein–RNA interactions for Protein: P97386

Lig3, DNA ligase 3, mousemouse

Predictions only

Length 1,015 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lig3P97386 Rwdd1-201ENSMUST00000019917 1090 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Lig3P97386 Rab7-206ENSMUST00000203674 424 ntTSL 5 BASIC20.31■□□□□ 0.84
Lig3P97386 Gm10065-201ENSMUST00000076238 345 ntAPPRIS P1 BASIC20.31■□□□□ 0.84
Lig3P97386 Rtl8a-201ENSMUST00000088779 1195 ntAPPRIS P1 BASIC20.31■□□□□ 0.84
Lig3P97386 Ubxn1-201ENSMUST00000096255 1041 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Lig3P97386 Hpdl-201ENSMUST00000055436 1804 ntAPPRIS P1 BASIC20.31■□□□□ 0.84
Lig3P97386 Arfrp1-209ENSMUST00000170190 2483 ntTSL 5 BASIC20.31■□□□□ 0.84
Lig3P97386 Gfi1-201ENSMUST00000031205 2860 ntAPPRIS P3 TSL 1 (best) BASIC20.31■□□□□ 0.84
Lig3P97386 Hoxb3os-201ENSMUST00000131275 2315 ntTSL 3 BASIC20.31■□□□□ 0.84
Lig3P97386 Rbm7-201ENSMUST00000170000 1773 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Lig3P97386 Fam105a-202ENSMUST00000226145 2950 ntAPPRIS P1 BASIC20.31■□□□□ 0.84
Lig3P97386 Foxa3-201ENSMUST00000036018 2037 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Lig3P97386 Pxdc1-202ENSMUST00000053459 2684 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Lig3P97386 Cep170b-202ENSMUST00000101018 6641 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Lig3P97386 Gm26795-201ENSMUST00000180993 1952 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
Lig3P97386 5031439G07Rik-201ENSMUST00000047144 6845 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Lig3P97386 Nphp3-201ENSMUST00000035167 5899 ntAPPRIS P2 TSL 1 (best) BASIC20.3■□□□□ 0.84
Lig3P97386 Gm43859-201ENSMUST00000200075 1412 ntBASIC20.3■□□□□ 0.84
Lig3P97386 Bspry-202ENSMUST00000107449 2167 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
Lig3P97386 Rhobtb3-201ENSMUST00000022078 4980 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Lig3P97386 Gm13148-201ENSMUST00000118892 745 ntBASIC20.3■□□□□ 0.84
Lig3P97386 Map1lc3b-203ENSMUST00000181521 775 ntTSL 3 BASIC20.3■□□□□ 0.84
Lig3P97386 Msantd1-203ENSMUST00000202205 744 ntTSL 2 BASIC20.3■□□□□ 0.84
Lig3P97386 D1Ertd622e-204ENSMUST00000153115 3495 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Lig3P97386 Luc7l2-201ENSMUST00000057692 2702 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Lig3P97386 2310022A10Rik-201ENSMUST00000067386 2701 ntAPPRIS P2 TSL 1 (best) BASIC20.3■□□□□ 0.84
Lig3P97386 Tmem250-ps-201ENSMUST00000133808 2483 ntTSL 2 BASIC20.3■□□□□ 0.84
Lig3P97386 Cryzl1-203ENSMUST00000117644 1727 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
Lig3P97386 Tmprss5-205ENSMUST00000170246 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
Lig3P97386 Cachd1-201ENSMUST00000030257 5765 ntAPPRIS P2 TSL 1 (best) BASIC20.3■□□□□ 0.84
Lig3P97386 Sptbn4-207ENSMUST00000172269 8737 ntAPPRIS ALT2 TSL 2 BASIC20.29■□□□□ 0.84
Lig3P97386 Pard3-219ENSMUST00000162309 5659 ntAPPRIS P3 TSL 1 (best) BASIC20.29■□□□□ 0.84
Lig3P97386 Lbp-202ENSMUST00000109491 1322 ntTSL 2 BASIC20.29■□□□□ 0.84
Lig3P97386 Shisa5-202ENSMUST00000112059 1910 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
Lig3P97386 1700067K01Rik-203ENSMUST00000172548 986 ntAPPRIS P2 TSL 1 (best) BASIC20.29■□□□□ 0.84
Lig3P97386 Gon7-202ENSMUST00000179263 525 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
Lig3P97386 AC135963.1-201ENSMUST00000211640 717 ntBASIC20.29■□□□□ 0.84
Lig3P97386 AC135637.1-201ENSMUST00000227750 365 ntBASIC20.29■□□□□ 0.84
Lig3P97386 Tnnt2-201ENSMUST00000027671 1064 ntAPPRIS ALT2 TSL 5 BASIC20.29■□□□□ 0.84
Lig3P97386 A230083G16Rik-201ENSMUST00000069553 991 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
Lig3P97386 BC107364-201ENSMUST00000093126 1159 ntAPPRIS P4 TSL 1 (best) BASIC20.29■□□□□ 0.84
Lig3P97386 BC107364-202ENSMUST00000098841 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
Lig3P97386 Pde7a-202ENSMUST00000099195 6298 ntAPPRIS ALT1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Lig3P97386 Hcn2-201ENSMUST00000020581 3089 ntAPPRIS P1 TSL 5 BASIC20.29■□□□□ 0.84
Lig3P97386 Neto2-205ENSMUST00000216286 2932 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Lig3P97386 Gas2-203ENSMUST00000107591 2232 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Lig3P97386 Zfp706-201ENSMUST00000078976 4417 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Lig3P97386 Itgb5-202ENSMUST00000115028 3090 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Lig3P97386 Stn1-201ENSMUST00000049369 1992 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Lig3P97386 Dtx4-201ENSMUST00000045521 5765 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Lig3P97386 Nsun2-202ENSMUST00000109699 2834 ntAPPRIS P2 TSL 1 (best) BASIC20.28■□□□□ 0.84
Lig3P97386 Srsf4-202ENSMUST00000053819 2257 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Lig3P97386 Gm10300-201ENSMUST00000094662 2296 ntAPPRIS P1 BASIC20.28■□□□□ 0.84
Lig3P97386 Atrn-201ENSMUST00000028781 8745 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Lig3P97386 Gm7290-201ENSMUST00000104990 617 ntBASIC20.28■□□□□ 0.84
Lig3P97386 Gm12918-201ENSMUST00000120234 636 ntBASIC20.28■□□□□ 0.84
Lig3P97386 Gm15710-201ENSMUST00000121821 636 ntBASIC20.28■□□□□ 0.84
Lig3P97386 Zfp560-202ENSMUST00000143992 608 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
Lig3P97386 Mir6982-201ENSMUST00000184354 68 ntBASIC20.28■□□□□ 0.84
Lig3P97386 1700101I19Rik-202ENSMUST00000186712 510 ntBASIC20.28■□□□□ 0.84
Lig3P97386 Rab6b-202ENSMUST00000189134 716 ntTSL 3 BASIC20.28■□□□□ 0.84
Lig3P97386 Gm5075-201ENSMUST00000196916 622 ntBASIC20.28■□□□□ 0.84
Lig3P97386 Gm20049-201ENSMUST00000219950 730 ntBASIC20.28■□□□□ 0.84
Lig3P97386 Rpl13-ps6-201ENSMUST00000079761 636 ntBASIC20.28■□□□□ 0.84
Lig3P97386 Rpl13-ps3-201ENSMUST00000079960 624 ntBASIC20.28■□□□□ 0.84
Lig3P97386 Slc9a2-203ENSMUST00000192345 2507 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
Lig3P97386 Otud5-203ENSMUST00000115666 2471 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
Lig3P97386 Pank2-204ENSMUST00000150843 4266 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Lig3P97386 Rhov-201ENSMUST00000037360 1703 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Lig3P97386 Faxc-201ENSMUST00000029908 2627 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Lig3P97386 Ildr2-204ENSMUST00000192732 2263 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
Lig3P97386 Ndufa12-204ENSMUST00000179990 566 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
Lig3P97386 Prmt1-210ENSMUST00000208829 621 ntTSL 5 BASIC20.27■□□□□ 0.84
Lig3P97386 Ankrd9-201ENSMUST00000043459 1706 ntAPPRIS P2 TSL 1 (best) BASIC20.27■□□□□ 0.83
Lig3P97386 Pcnp-202ENSMUST00000114444 2295 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
Lig3P97386 Fkbp9-201ENSMUST00000031795 3009 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
Lig3P97386 Arfrp1-203ENSMUST00000127988 2447 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Lig3P97386 Lacc1-201ENSMUST00000062789 2444 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Lig3P97386 Traf3-203ENSMUST00000117269 6972 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
Lig3P97386 Eomes-202ENSMUST00000111763 2869 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
Lig3P97386 Gm53-201ENSMUST00000129907 1172 ntTSL 2 BASIC20.26■□□□□ 0.83
Lig3P97386 1110046J04Rik-201ENSMUST00000147622 397 ntTSL 3 BASIC20.26■□□□□ 0.83
Lig3P97386 Coro1a-209ENSMUST00000173108 1170 ntTSL 5 BASIC20.26■□□□□ 0.83
Lig3P97386 Ube2a-208ENSMUST00000202812 719 ntTSL 2 BASIC20.26■□□□□ 0.83
Lig3P97386 Gm40460-201ENSMUST00000211591 735 ntAPPRIS P1 BASIC20.26■□□□□ 0.83
Lig3P97386 Def6-201ENSMUST00000002327 2277 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Lig3P97386 Ankrd33b-202ENSMUST00000076942 1641 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
Lig3P97386 Gm43909-201ENSMUST00000203443 1876 ntBASIC20.26■□□□□ 0.83
Lig3P97386 Sumf1-201ENSMUST00000032191 2593 ntAPPRIS P2 TSL 1 (best) BASIC20.26■□□□□ 0.83
Lig3P97386 Golph3-205ENSMUST00000228671 2842 ntBASIC20.26■□□□□ 0.83
Lig3P97386 Dedd2-201ENSMUST00000058702 1828 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Lig3P97386 Fgfr1-215ENSMUST00000179592 5041 ntTSL 5 BASIC20.25■□□□□ 0.83
Lig3P97386 Anapc5-205ENSMUST00000197074 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
Lig3P97386 Anapc5-212ENSMUST00000199406 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
Lig3P97386 Sncb-201ENSMUST00000036825 1351 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Lig3P97386 Jade1-202ENSMUST00000163764 5584 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
Lig3P97386 Zfp637-201ENSMUST00000112858 650 ntTSL 2 BASIC20.25■□□□□ 0.83
Lig3P97386 Zfp637-203ENSMUST00000112860 1231 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
Lig3P97386 2610035F20Rik-202ENSMUST00000177306 1149 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
Lig3P97386 1110004E09Rik-201ENSMUST00000023694 1143 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Retrieved 100 of 76,532 protein–RNA pairs in 30.5 ms