Protein–RNA interactions for Protein: P53668

Limk1, LIM domain kinase 1, mousemouse

Predictions only

Length 647 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Limk1P53668 Ssbp3-201ENSMUST00000030367 3195 ntAPPRIS P2 TSL 1 (best) BASIC18.35■□□□□ 0.53
Limk1P53668 Ptger3-202ENSMUST00000173533 2097 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
Limk1P53668 Pds5a-209ENSMUST00000201948 8934 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
Limk1P53668 Ppp1r16a-201ENSMUST00000037551 2692 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Limk1P53668 Mrps16-201ENSMUST00000061444 2572 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Limk1P53668 Dvl3-203ENSMUST00000171572 2493 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
Limk1P53668 Dbf4-201ENSMUST00000002368 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
Limk1P53668 Sirt1-201ENSMUST00000020257 3905 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
Limk1P53668 Krt76-201ENSMUST00000100179 2312 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Limk1P53668 Nkd1-203ENSMUST00000211113 1474 ntTSL 5 BASIC18.34■□□□□ 0.53
Limk1P53668 Senp6-201ENSMUST00000037484 5111 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
Limk1P53668 Map4k3-201ENSMUST00000025089 4225 ntAPPRIS P2 TSL 5 BASIC18.34■□□□□ 0.53
Limk1P53668 Gm45736-201ENSMUST00000210592 1352 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
Limk1P53668 Pigp-203ENSMUST00000113910 966 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
Limk1P53668 Gm15378-201ENSMUST00000121894 207 ntBASIC18.34■□□□□ 0.53
Limk1P53668 Tcta-202ENSMUST00000192886 1094 ntAPPRIS P1 TSL 2 BASIC18.34■□□□□ 0.53
Limk1P53668 Aga-203ENSMUST00000211424 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
Limk1P53668 Gm45822-201ENSMUST00000212231 259 ntTSL 3 BASIC18.34■□□□□ 0.53
Limk1P53668 Plpp1-202ENSMUST00000070951 1272 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
Limk1P53668 Chpt1-202ENSMUST00000073783 852 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
Limk1P53668 Brsk2-205ENSMUST00000172652 2501 ntTSL 5 BASIC18.34■□□□□ 0.53
Limk1P53668 Pus1-203ENSMUST00000086643 1868 ntAPPRIS P4 TSL 1 (best) BASIC18.34■□□□□ 0.53
Limk1P53668 Cdk8-201ENSMUST00000031640 2973 ntAPPRIS P1 TSL 2 BASIC18.34■□□□□ 0.53
Limk1P53668 Sox12-202ENSMUST00000182625 4453 ntAPPRIS P1 BASIC18.34■□□□□ 0.53
Limk1P53668 AA543186-201ENSMUST00000180841 1696 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
Limk1P53668 Rbmxl1-201ENSMUST00000049245 1695 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Limk1P53668 Zfp213-201ENSMUST00000095606 2672 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Limk1P53668 Hmx2-202ENSMUST00000183219 1546 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
Limk1P53668 Olfm2-204ENSMUST00000217198 2005 ntAPPRIS ALT2 TSL 3 BASIC18.33■□□□□ 0.53
Limk1P53668 Stau2-217ENSMUST00000162751 3030 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
Limk1P53668 Whrn-204ENSMUST00000095037 2419 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
Limk1P53668 Man2c1os-201ENSMUST00000125333 1910 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
Limk1P53668 Nrn1-203ENSMUST00000223611 1443 ntBASIC18.33■□□□□ 0.53
Limk1P53668 AC122428.2-201ENSMUST00000216321 1832 ntBASIC18.33■□□□□ 0.53
Limk1P53668 Gm21596-201ENSMUST00000178049 1316 ntBASIC18.33■□□□□ 0.53
Limk1P53668 Zfp467-208ENSMUST00000114564 626 ntTSL 2 BASIC18.33■□□□□ 0.52
Limk1P53668 Gm14321-201ENSMUST00000127441 632 ntTSL 3 BASIC18.33■□□□□ 0.52
Limk1P53668 Serf1-205ENSMUST00000152286 465 ntTSL 3 BASIC18.33■□□□□ 0.52
Limk1P53668 Ccl27a-219ENSMUST00000173865 657 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
Limk1P53668 D330020A13Rik-201ENSMUST00000181956 1069 ntAPPRIS P1 BASIC18.33■□□□□ 0.52
Limk1P53668 Siglecf-206ENSMUST00000206299 2149 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
Limk1P53668 Zfp787-204ENSMUST00000207628 576 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
Limk1P53668 Tbc1d7-201ENSMUST00000021797 1239 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Limk1P53668 Gm26709-202ENSMUST00000223049 819 ntTSL 5 BASIC18.33■□□□□ 0.52
Limk1P53668 Cnih2-201ENSMUST00000025805 1237 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Limk1P53668 Naxe-201ENSMUST00000029708 908 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Limk1P53668 Gsx2-201ENSMUST00000040477 1665 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Limk1P53668 Cdo1-201ENSMUST00000035804 1530 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Limk1P53668 Fam49b-207ENSMUST00000228226 1896 ntAPPRIS P1 BASIC18.33■□□□□ 0.52
Limk1P53668 Ddost-201ENSMUST00000030538 2120 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Limk1P53668 Uba5-201ENSMUST00000035166 2404 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Limk1P53668 H2afx-201ENSMUST00000052686 1384 ntAPPRIS P1 BASIC18.32■□□□□ 0.52
Limk1P53668 Tnks2-201ENSMUST00000025729 6481 ntAPPRIS P1 TSL 5 BASIC18.32■□□□□ 0.52
Limk1P53668 Col23a1-201ENSMUST00000102765 5658 ntAPPRIS P1 TSL 5 BASIC18.32■□□□□ 0.52
Limk1P53668 Atp5c1-203ENSMUST00000114897 1166 ntAPPRIS P2 TSL 1 (best) BASIC18.32■□□□□ 0.52
Limk1P53668 Arrdc4-202ENSMUST00000118110 1129 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
Limk1P53668 Prlh-201ENSMUST00000166281 276 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Limk1P53668 2510002D24Rik-204ENSMUST00000191388 995 ntTSL 5 BASIC18.32■□□□□ 0.52
Limk1P53668 Fgfr1op2-202ENSMUST00000058245 918 ntTSL 2 BASIC18.32■□□□□ 0.52
Limk1P53668 Rab3il1-201ENSMUST00000113161 2225 ntAPPRIS P3 TSL 5 BASIC18.32■□□□□ 0.52
Limk1P53668 Tax1bp3-201ENSMUST00000040687 1523 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Limk1P53668 Pbx1-206ENSMUST00000176790 1828 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
Limk1P53668 Ak2-202ENSMUST00000102604 1781 ntAPPRIS ALT1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Limk1P53668 4933428G20Rik-201ENSMUST00000056955 1425 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Limk1P53668 Abhd8-201ENSMUST00000008094 1978 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Limk1P53668 Dcbld1-203ENSMUST00000218582 2795 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
Limk1P53668 Lgr4-202ENSMUST00000111037 4988 ntTSL 5 BASIC18.31■□□□□ 0.52
Limk1P53668 Gm26837-201ENSMUST00000180821 2110 ntTSL 5 BASIC18.31■□□□□ 0.52
Limk1P53668 Smim10l2a-201ENSMUST00000068106 2393 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Limk1P53668 Tmem64-201ENSMUST00000062684 4670 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Limk1P53668 Grin2c-202ENSMUST00000106554 4895 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
Limk1P53668 A730015C16Rik-201ENSMUST00000164855 1221 ntAPPRIS P1 BASIC18.31■□□□□ 0.52
Limk1P53668 Cpne1-217ENSMUST00000184265 871 ntTSL 5 BASIC18.31■□□□□ 0.52
Limk1P53668 H2afz-201ENSMUST00000041045 1069 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Limk1P53668 Paox-202ENSMUST00000097967 1024 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
Limk1P53668 Ddx39b-201ENSMUST00000068056 1739 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Limk1P53668 Dlg3-201ENSMUST00000000901 4885 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
Limk1P53668 Glrb-201ENSMUST00000029654 3029 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Limk1P53668 Pelo-201ENSMUST00000109226 1600 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Limk1P53668 Usp2-202ENSMUST00000065461 2057 ntAPPRIS P2 TSL 1 (best) BASIC18.3■□□□□ 0.52
Limk1P53668 Pacsin2-201ENSMUST00000056177 2795 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Limk1P53668 Ccdc107-202ENSMUST00000107922 865 ntAPPRIS ALT2 TSL 2 BASIC18.3■□□□□ 0.52
Limk1P53668 Il17re-205ENSMUST00000203661 2118 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
Limk1P53668 AC061963.1-203ENSMUST00000213473 453 ntTSL 3 BASIC18.3■□□□□ 0.52
Limk1P53668 AC153881.2-201ENSMUST00000214877 204 ntBASIC18.3■□□□□ 0.52
Limk1P53668 AC154266.1-201ENSMUST00000223190 503 ntBASIC18.3■□□□□ 0.52
Limk1P53668 Grp-201ENSMUST00000025395 862 ntAPPRIS P2 TSL 1 (best) BASIC18.3■□□□□ 0.52
Limk1P53668 Crybb1-201ENSMUST00000031286 882 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Limk1P53668 Cox8a-201ENSMUST00000039758 545 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Limk1P53668 Fgf2os-201ENSMUST00000153785 1441 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
Limk1P53668 Asph-217ENSMUST00000146441 2576 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
Limk1P53668 Aire-203ENSMUST00000105396 1749 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
Limk1P53668 Aire-214ENSMUST00000154374 1712 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
Limk1P53668 Aire-215ENSMUST00000155021 1737 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
Limk1P53668 Mdfi-202ENSMUST00000066368 1711 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Limk1P53668 Fam83d-201ENSMUST00000029183 2266 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Limk1P53668 Slc35d3-201ENSMUST00000059805 2630 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Limk1P53668 Selenos-201ENSMUST00000101801 1191 ntAPPRIS P2 TSL 1 (best) BASIC18.29■□□□□ 0.52
Limk1P53668 2510002D24Rik-201ENSMUST00000055413 1281 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Limk1P53668 Gm7579-201ENSMUST00000097943 732 ntAPPRIS P1 BASIC18.29■□□□□ 0.52
Retrieved 100 of 76,532 protein–RNA pairs in 17.1 ms