Protein–RNA interactions for Protein: P48381

Rfx3, Transcription factor RFX3, mousemouse

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx3P48381 Lrrfip1-201ENSMUST00000068116 2050 ntAPPRIS ALT2 TSL 5 BASIC16.91■□□□□ 0.3
Rfx3P48381 Galnt9-201ENSMUST00000040001 2883 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Rfx3P48381 Plin1-201ENSMUST00000032762 1916 ntAPPRIS P1 TSL 5 BASIC16.91■□□□□ 0.3
Rfx3P48381 Zfp771-201ENSMUST00000052509 1484 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Rfx3P48381 Sqstm1-202ENSMUST00000102774 2037 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Rfx3P48381 Shc2-201ENSMUST00000020564 3243 ntAPPRIS P1 TSL 5 BASIC16.91■□□□□ 0.3
Rfx3P48381 Gls-204ENSMUST00000114513 4966 ntAPPRIS P3 TSL 5 BASIC16.9■□□□□ 0.3
Rfx3P48381 Kcnip1-201ENSMUST00000065970 1749 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Rfx3P48381 Sra1-201ENSMUST00000001415 2061 ntAPPRIS P4 TSL 5 BASIC16.9■□□□□ 0.3
Rfx3P48381 E030030I06Rik-202ENSMUST00000179054 2081 ntAPPRIS P4 TSL 1 (best) BASIC16.9■□□□□ 0.3
Rfx3P48381 Hyal2-207ENSMUST00000195752 2062 ntAPPRIS P2 TSL 5 BASIC16.9■□□□□ 0.3
Rfx3P48381 Gpc6-204ENSMUST00000125435 2423 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
Rfx3P48381 Dock9-202ENSMUST00000100299 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
Rfx3P48381 Arhgap44-202ENSMUST00000093001 2256 ntTSL 2 BASIC16.9■□□□□ 0.3
Rfx3P48381 Ddx39b-203ENSMUST00000173731 2848 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Rfx3P48381 4930519P11Rik-201ENSMUST00000181369 501 ntAPPRIS P1 BASIC16.9■□□□□ 0.3
Rfx3P48381 AC137127.1-201ENSMUST00000213466 1078 ntBASIC16.9■□□□□ 0.3
Rfx3P48381 Erh-201ENSMUST00000021559 1293 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Rfx3P48381 Ss18l2-201ENSMUST00000035113 577 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Rfx3P48381 Syndig1-202ENSMUST00000109935 2050 ntAPPRIS P1 TSL 5 BASIC16.9■□□□□ 0.3
Rfx3P48381 Rpap3-201ENSMUST00000023104 2260 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Rfx3P48381 Kis2-201ENSMUST00000133214 1717 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
Rfx3P48381 Myo1b-203ENSMUST00000114537 4618 ntTSL 5 BASIC16.9■□□□□ 0.3
Rfx3P48381 Rassf8-203ENSMUST00000111704 5446 ntAPPRIS P1 TSL 5 BASIC16.9■□□□□ 0.3
Rfx3P48381 Ttc34-203ENSMUST00000207854 4733 ntAPPRIS ALT2 TSL 5 BASIC16.89■□□□□ 0.3
Rfx3P48381 Dmwd-202ENSMUST00000108479 2388 ntAPPRIS ALT2 TSL 5 BASIC16.89■□□□□ 0.3
Rfx3P48381 Gm38342-201ENSMUST00000195710 2980 ntBASIC16.89■□□□□ 0.3
Rfx3P48381 Gm5953-201ENSMUST00000220644 2616 ntBASIC16.89■□□□□ 0.29
Rfx3P48381 Wtap-205ENSMUST00000160781 2442 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
Rfx3P48381 Rnf112-201ENSMUST00000054927 3086 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
Rfx3P48381 Pgs1-203ENSMUST00000132676 2863 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Rfx3P48381 Blcap-202ENSMUST00000109528 2056 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Rfx3P48381 Anks1b-217ENSMUST00000182550 1868 ntTSL 5 BASIC16.89■□□□□ 0.29
Rfx3P48381 Pdp1-206ENSMUST00000108302 2525 ntTSL 3 BASIC16.89■□□□□ 0.29
Rfx3P48381 Gm44832-201ENSMUST00000208849 2303 ntBASIC16.89■□□□□ 0.29
Rfx3P48381 Ost4-202ENSMUST00000132253 1144 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Rfx3P48381 Epb41l4aos-201ENSMUST00000146010 430 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
Rfx3P48381 Smad6-203ENSMUST00000179458 273 ntBASIC16.89■□□□□ 0.29
Rfx3P48381 Ctf1-204ENSMUST00000206506 784 ntTSL 2 BASIC16.89■□□□□ 0.29
Rfx3P48381 Vgf-204ENSMUST00000190827 2834 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Rfx3P48381 Faxc-201ENSMUST00000029908 2627 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Rfx3P48381 Rncr4-201ENSMUST00000194541 2234 ntBASIC16.89■□□□□ 0.29
Rfx3P48381 Ciapin1-201ENSMUST00000034233 1807 ntAPPRIS P1 TSL 5 BASIC16.89■□□□□ 0.29
Rfx3P48381 Sox12-201ENSMUST00000063332 4169 ntAPPRIS P1 TSL 2 BASIC16.89■□□□□ 0.29
Rfx3P48381 Prkg2-201ENSMUST00000031277 2618 ntTSL 5 BASIC16.88■□□□□ 0.29
Rfx3P48381 Schip1-206ENSMUST00000182719 2156 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
Rfx3P48381 Fiz1-202ENSMUST00000165320 2653 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Rfx3P48381 Ccdc84-201ENSMUST00000053286 1725 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Rfx3P48381 Gab1-202ENSMUST00000210676 4985 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
Rfx3P48381 Fblim1-202ENSMUST00000105784 3036 ntAPPRIS P1 TSL 5 BASIC16.88■□□□□ 0.29
Rfx3P48381 Kdm1a-202ENSMUST00000105847 3028 ntAPPRIS ALT2 TSL 5 BASIC16.88■□□□□ 0.29
Rfx3P48381 Trim72-201ENSMUST00000081042 1755 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Rfx3P48381 Plekhm2-202ENSMUST00000084203 4136 ntAPPRIS P3 TSL 5 BASIC16.88■□□□□ 0.29
Rfx3P48381 1700003E16Rik-202ENSMUST00000203203 2070 ntTSL 2 BASIC16.88■□□□□ 0.29
Rfx3P48381 Tmem185a-202ENSMUST00000114630 1307 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Rfx3P48381 Nadk2-201ENSMUST00000067760 3731 ntAPPRIS P5 TSL 5 BASIC16.88■□□□□ 0.29
Rfx3P48381 Fem1c-201ENSMUST00000036226 5726 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Rfx3P48381 Tcp11-201ENSMUST00000042692 1984 ntAPPRIS P3 TSL 1 (best) BASIC16.88■□□□□ 0.29
Rfx3P48381 Cpeb2-204ENSMUST00000166713 6846 ntAPPRIS ALT2 TSL 5 BASIC16.87■□□□□ 0.29
Rfx3P48381 Runx2-204ENSMUST00000159943 2316 ntAPPRIS P3 TSL 1 (best) BASIC16.87■□□□□ 0.29
Rfx3P48381 Tmem79-203ENSMUST00000107553 2053 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
Rfx3P48381 Xkr4-201ENSMUST00000070533 3634 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
Rfx3P48381 Cdca4-201ENSMUST00000062092 2425 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
Rfx3P48381 Aktip-201ENSMUST00000109609 1171 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
Rfx3P48381 Gm11421-201ENSMUST00000122124 294 ntBASIC16.87■□□□□ 0.29
Rfx3P48381 Gm43173-201ENSMUST00000202246 593 ntBASIC16.87■□□□□ 0.29
Rfx3P48381 Gtsf1-201ENSMUST00000023129 819 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
Rfx3P48381 Fgfr3-202ENSMUST00000087820 2630 ntAPPRIS ALT2 TSL 5 BASIC16.87■□□□□ 0.29
Rfx3P48381 Zfp746-203ENSMUST00000203609 3648 ntAPPRIS ALT2 TSL 5 BASIC16.87■□□□□ 0.29
Rfx3P48381 Crh-201ENSMUST00000061294 1320 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
Rfx3P48381 Mtmr1-201ENSMUST00000015358 4634 ntAPPRIS P2 TSL 1 (best) BASIC16.87■□□□□ 0.29
Rfx3P48381 Crlf2-203ENSMUST00000200284 1405 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
Rfx3P48381 Schip1-201ENSMUST00000029346 2201 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
Rfx3P48381 Kcne1l-201ENSMUST00000134825 1543 ntAPPRIS P1 BASIC16.86■□□□□ 0.29
Rfx3P48381 Pcf11-201ENSMUST00000119954 5995 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
Rfx3P48381 Dnpep-204ENSMUST00000185797 2510 ntAPPRIS ALT2 TSL 1 (best) BASIC16.86■□□□□ 0.29
Rfx3P48381 Cetn4-205ENSMUST00000140956 2981 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
Rfx3P48381 Psmg4-202ENSMUST00000147632 555 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
Rfx3P48381 Sox8-202ENSMUST00000173447 928 ntAPPRIS ALT2 TSL 1 (best) BASIC16.86■□□□□ 0.29
Rfx3P48381 Gm45417-201ENSMUST00000209533 758 ntBASIC16.86■□□□□ 0.29
Rfx3P48381 Gp1bb-201ENSMUST00000051160 645 ntAPPRIS P3 BASIC16.86■□□□□ 0.29
Rfx3P48381 Aire-203ENSMUST00000105396 1749 ntAPPRIS ALT2 TSL 1 (best) BASIC16.86■□□□□ 0.29
Rfx3P48381 Wnt8a-201ENSMUST00000012426 1746 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
Rfx3P48381 Aire-214ENSMUST00000154374 1712 ntAPPRIS ALT2 TSL 1 (best) BASIC16.86■□□□□ 0.29
Rfx3P48381 Aire-215ENSMUST00000155021 1737 ntAPPRIS ALT2 TSL 1 (best) BASIC16.86■□□□□ 0.29
Rfx3P48381 Mchr1-201ENSMUST00000166855 2188 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
Rfx3P48381 Sbf1-201ENSMUST00000123791 6190 ntAPPRIS P3 TSL 1 (best) BASIC16.86■□□□□ 0.29
Rfx3P48381 Gabpb1-203ENSMUST00000103226 1338 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
Rfx3P48381 Smap1-201ENSMUST00000027339 2289 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
Rfx3P48381 Klc3-203ENSMUST00000108458 1823 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
Rfx3P48381 Trim44-201ENSMUST00000102573 5612 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
Rfx3P48381 Gm45141-201ENSMUST00000206502 1888 ntBASIC16.86■□□□□ 0.29
Rfx3P48381 Mid1-203ENSMUST00000079443 2815 ntTSL 5 BASIC16.86■□□□□ 0.29
Rfx3P48381 Znrf1-205ENSMUST00000172856 4600 ntAPPRIS P1 TSL 5 BASIC16.85■□□□□ 0.29
Rfx3P48381 Shisa4-201ENSMUST00000041240 1763 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
Rfx3P48381 Larp1b-202ENSMUST00000048490 2354 ntAPPRIS P2 TSL 1 (best) BASIC16.85■□□□□ 0.29
Rfx3P48381 Dtwd2-201ENSMUST00000025383 2476 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
Rfx3P48381 Ppp1r12b-203ENSMUST00000112163 828 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
Rfx3P48381 Gm6139-201ENSMUST00000079261 882 ntBASIC16.85■□□□□ 0.29
Rfx3P48381 Pllp-201ENSMUST00000034227 1926 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
Retrieved 100 of 76,532 protein–RNA pairs in 27.4 ms