Protein–RNA interactions for Protein: O88696

Clpp, ATP-dependent Clp protease proteolytic subunit, mitochondrial, mousemouse

Predictions only

Length 272 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ClppO88696 Cetn3-201ENSMUST00000022009 1226 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
ClppO88696 Vax2-201ENSMUST00000037807 1242 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
ClppO88696 Bcl10-201ENSMUST00000029842 1949 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
ClppO88696 Mplkip-201ENSMUST00000049744 2672 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
ClppO88696 Suz12-206ENSMUST00000163272 4303 ntAPPRIS ALT2 TSL 5 BASIC18.21■□□□□ 0.51
ClppO88696 1700123O20Rik-201ENSMUST00000038539 1843 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
ClppO88696 Il17re-203ENSMUST00000101065 1973 ntTSL 1 (best) BASIC18.21■□□□□ 0.5
ClppO88696 Sept7-202ENSMUST00000165594 2516 ntAPPRIS P2 TSL 5 BASIC18.2■□□□□ 0.5
ClppO88696 Pelo-201ENSMUST00000109226 1600 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
ClppO88696 Ubl3-202ENSMUST00000164904 2001 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
ClppO88696 Dao-201ENSMUST00000086599 1525 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
ClppO88696 Kctd15-201ENSMUST00000032709 2480 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
ClppO88696 Neurog1-201ENSMUST00000058475 1686 ntAPPRIS P1 BASIC18.2■□□□□ 0.5
ClppO88696 Map1lc3b-203ENSMUST00000181521 775 ntTSL 3 BASIC18.2■□□□□ 0.5
ClppO88696 Spcs1-201ENSMUST00000186131 1005 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
ClppO88696 CT010467.1-202ENSMUST00000205406 714 ntBASIC18.2■□□□□ 0.5
ClppO88696 Rtl8b-201ENSMUST00000088778 1232 ntAPPRIS P1 BASIC18.2■□□□□ 0.5
ClppO88696 Map3k10-202ENSMUST00000108341 3403 ntAPPRIS ALT2 TSL 5 BASIC18.2■□□□□ 0.5
ClppO88696 Gm38399-201ENSMUST00000112103 1645 ntTSL 2 BASIC18.2■□□□□ 0.5
ClppO88696 Panx2-203ENSMUST00000162424 3391 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
ClppO88696 Kmt5b-216ENSMUST00000176926 1551 ntAPPRIS ALT2 TSL 5 BASIC18.19■□□□□ 0.5
ClppO88696 Lhx1-204ENSMUST00000184646 1201 ntTSL 5 BASIC18.19■□□□□ 0.5
ClppO88696 Fam228b-205ENSMUST00000218575 1281 ntAPPRIS ALT2 TSL 2 BASIC18.19■□□□□ 0.5
ClppO88696 Nudt14-202ENSMUST00000221397 1241 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
ClppO88696 Dnlz-201ENSMUST00000028295 2916 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
ClppO88696 Areg-201ENSMUST00000031325 1215 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
ClppO88696 Snrpc-201ENSMUST00000071006 870 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
ClppO88696 Cyp4f14-202ENSMUST00000179434 2207 ntAPPRIS P1 TSL 5 BASIC18.19■□□□□ 0.5
ClppO88696 Cyp4f14-201ENSMUST00000054174 2207 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
ClppO88696 Ankrd33b-203ENSMUST00000110410 2070 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
ClppO88696 Plekhm2-202ENSMUST00000084203 4136 ntAPPRIS P3 TSL 5 BASIC18.19■□□□□ 0.5
ClppO88696 Ppt2-204ENSMUST00000168391 1342 ntAPPRIS P1 TSL 5 BASIC18.19■□□□□ 0.5
ClppO88696 Snx4-201ENSMUST00000023502 2442 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
ClppO88696 Ism1-201ENSMUST00000099307 2944 ntTSL 5 BASIC18.19■□□□□ 0.5
ClppO88696 Nexmif-201ENSMUST00000056502 5211 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
ClppO88696 Vgf-201ENSMUST00000041543 2553 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
ClppO88696 Sfmbt2-204ENSMUST00000114864 1901 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
ClppO88696 Sstr4-201ENSMUST00000109962 1424 ntAPPRIS P1 BASIC18.18■□□□□ 0.5
ClppO88696 H2-Q7-201ENSMUST00000071951 1406 ntAPPRIS P2 TSL 1 (best) BASIC18.18■□□□□ 0.5
ClppO88696 H2-Q7-203ENSMUST00000078205 1419 ntTSL 5 BASIC18.18■□□□□ 0.5
ClppO88696 Gm13534-201ENSMUST00000121169 513 ntBASIC18.18■□□□□ 0.5
ClppO88696 Gm12669-201ENSMUST00000122162 1009 ntBASIC18.18■□□□□ 0.5
ClppO88696 Gm11691-201ENSMUST00000130963 658 ntTSL 2 BASIC18.18■□□□□ 0.5
ClppO88696 Clk3-201ENSMUST00000065330 2496 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
ClppO88696 Zfp771-201ENSMUST00000052509 1484 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
ClppO88696 Rcl1-201ENSMUST00000064393 1803 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
ClppO88696 Gm16933-201ENSMUST00000141741 2169 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
ClppO88696 Hoxa5-201ENSMUST00000048794 1877 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
ClppO88696 Stau2-217ENSMUST00000162751 3030 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
ClppO88696 Bmpr1a-201ENSMUST00000049005 5956 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
ClppO88696 Irx4-202ENSMUST00000176684 2384 ntAPPRIS P1 TSL 5 BASIC18.17■□□□□ 0.5
ClppO88696 Uckl1os-201ENSMUST00000122831 2018 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
ClppO88696 Tmem245-202ENSMUST00000107609 2643 ntAPPRIS P2 TSL 5 BASIC18.17■□□□□ 0.5
ClppO88696 Lifr-202ENSMUST00000164529 2844 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
ClppO88696 Rpusd3-202ENSMUST00000113092 1269 ntAPPRIS P2 TSL 1 (best) BASIC18.17■□□□□ 0.5
ClppO88696 Gm12441-201ENSMUST00000121806 588 ntBASIC18.17■□□□□ 0.5
ClppO88696 Ece2-202ENSMUST00000122306 2495 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
ClppO88696 Mgat5b-201ENSMUST00000103027 4258 ntAPPRIS P1 TSL 5 BASIC18.17■□□□□ 0.5
ClppO88696 Fgfrl1-202ENSMUST00000112560 2318 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
ClppO88696 Tcp11-203ENSMUST00000114836 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
ClppO88696 Pdpk1-205ENSMUST00000115411 1724 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
ClppO88696 Gm11762-201ENSMUST00000135630 1705 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
ClppO88696 Nudt11-201ENSMUST00000103007 3036 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
ClppO88696 Ntn5-201ENSMUST00000107742 1574 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
ClppO88696 Mzt1-201ENSMUST00000042662 2240 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
ClppO88696 Gm16505-202ENSMUST00000220976 1626 ntTSL 5 BASIC18.16■□□□□ 0.5
ClppO88696 Snap91-203ENSMUST00000074501 2577 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
ClppO88696 BC017158-201ENSMUST00000033044 2627 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
ClppO88696 Ypel3-204ENSMUST00000106359 469 ntTSL 5 BASIC18.16■□□□□ 0.5
ClppO88696 Zfp637-201ENSMUST00000112858 650 ntTSL 2 BASIC18.16■□□□□ 0.5
ClppO88696 Zfp637-203ENSMUST00000112860 1231 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
ClppO88696 Gm27011-201ENSMUST00000182352 972 ntBASIC18.16■□□□□ 0.5
ClppO88696 Gm38205-201ENSMUST00000192243 258 ntBASIC18.16■□□□□ 0.5
ClppO88696 Foxk1-202ENSMUST00000198422 687 ntTSL 3 BASIC18.16■□□□□ 0.5
ClppO88696 AC175538.2-202ENSMUST00000224997 1057 ntAPPRIS P1 BASIC18.16■□□□□ 0.5
ClppO88696 Tmem230-206ENSMUST00000180286 1531 ntAPPRIS P1 TSL 2 BASIC18.16■□□□□ 0.5
ClppO88696 Zmym3-202ENSMUST00000117637 1593 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
ClppO88696 Slc39a7-203ENSMUST00000169397 2107 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
ClppO88696 3830408C21Rik-205ENSMUST00000225426 1898 ntBASIC18.16■□□□□ 0.5
ClppO88696 Gm10655-201ENSMUST00000098658 1397 ntBASIC18.16■□□□□ 0.5
ClppO88696 Tmem121b-201ENSMUST00000178687 4869 ntAPPRIS P1 BASIC18.15■□□□□ 0.5
ClppO88696 Mtfr1l-201ENSMUST00000102550 2025 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
ClppO88696 Atf6b-201ENSMUST00000015605 2566 ntAPPRIS P2 TSL 1 (best) BASIC18.15■□□□□ 0.5
ClppO88696 Ppp3ca-202ENSMUST00000070198 4758 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
ClppO88696 Rbm39-202ENSMUST00000109584 667 ntTSL 5 BASIC18.15■□□□□ 0.5
ClppO88696 AC167978.1-201ENSMUST00000182488 456 ntTSL 3 BASIC18.15■□□□□ 0.5
ClppO88696 Gm3807-201ENSMUST00000193520 1168 ntBASIC18.15■□□□□ 0.5
ClppO88696 Gm26774-201ENSMUST00000181534 2401 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
ClppO88696 Acvrl1-202ENSMUST00000117984 1852 ntAPPRIS P1 TSL 5 BASIC18.15■□□□□ 0.5
ClppO88696 Spsb3-203ENSMUST00000117890 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
ClppO88696 Fjx1-201ENSMUST00000099678 3134 ntAPPRIS P1 BASIC18.15■□□□□ 0.5
ClppO88696 Cdkn3-203ENSMUST00000227149 1952 ntBASIC18.15■□□□□ 0.5
ClppO88696 Fkbp1a-201ENSMUST00000044011 1658 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
ClppO88696 Col23a1-201ENSMUST00000102765 5658 ntAPPRIS P1 TSL 5 BASIC18.15■□□□□ 0.5
ClppO88696 Pcgf6-201ENSMUST00000026032 2098 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
ClppO88696 Hes1-201ENSMUST00000023171 1468 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
ClppO88696 Gm5784-201ENSMUST00000179344 2478 ntBASIC18.14■□□□□ 0.5
ClppO88696 Mael-201ENSMUST00000038782 1546 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
ClppO88696 Catsper2-201ENSMUST00000038073 2247 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
ClppO88696 Ipmk-201ENSMUST00000079252 5447 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.49
Retrieved 100 of 76,532 protein–RNA pairs in 19 ms