Protein–RNA interactions for Protein: O88609

Lmx1b, LIM homeobox transcription factor 1-beta, mousemouse

Predictions only

Length 395 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lmx1bO88609 Ascl1-201ENSMUST00000020243 2481 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Lmx1bO88609 Sfrp5-201ENSMUST00000018966 1900 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Lmx1bO88609 Bnc2-214ENSMUST00000176612 3963 ntTSL 5 BASIC16.94■□□□□ 0.3
Lmx1bO88609 Mapre3-202ENSMUST00000200692 1816 ntTSL 5 BASIC16.94■□□□□ 0.3
Lmx1bO88609 Kansl1-205ENSMUST00000106977 5510 ntAPPRIS P2 TSL 1 (best) BASIC16.94■□□□□ 0.3
Lmx1bO88609 St3gal4-201ENSMUST00000034537 2095 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Lmx1bO88609 Cdk4-201ENSMUST00000006911 2053 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Lmx1bO88609 Ube2b-202ENSMUST00000109086 585 ntAPPRIS P1 TSL 2 BASIC16.94■□□□□ 0.3
Lmx1bO88609 Tspan2os-201ENSMUST00000146624 590 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
Lmx1bO88609 Gm3807-201ENSMUST00000193520 1168 ntBASIC16.94■□□□□ 0.3
Lmx1bO88609 BC107364-201ENSMUST00000093126 1159 ntAPPRIS P4 TSL 1 (best) BASIC16.94■□□□□ 0.3
Lmx1bO88609 BC107364-202ENSMUST00000098841 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
Lmx1bO88609 Cerk-201ENSMUST00000044332 4518 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Lmx1bO88609 Wnt10b-203ENSMUST00000226610 2217 ntAPPRIS P1 BASIC16.94■□□□□ 0.3
Lmx1bO88609 Nkx2-3-201ENSMUST00000057178 2112 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Lmx1bO88609 Sbspon-201ENSMUST00000040695 2748 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Lmx1bO88609 H19-202ENSMUST00000136359 2286 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
Lmx1bO88609 Nsmf-206ENSMUST00000114388 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
Lmx1bO88609 Pdzd3-201ENSMUST00000034618 2193 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Lmx1bO88609 Ube4b-202ENSMUST00000103212 5626 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Lmx1bO88609 Pias2-202ENSMUST00000114777 4968 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
Lmx1bO88609 Rab20-201ENSMUST00000033900 1392 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Lmx1bO88609 Ypel3-204ENSMUST00000106359 469 ntTSL 5 BASIC16.93■□□□□ 0.3
Lmx1bO88609 Mcl1-202ENSMUST00000178686 858 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
Lmx1bO88609 Gm5408-201ENSMUST00000197998 747 ntBASIC16.93■□□□□ 0.3
Lmx1bO88609 Hoxc12-201ENSMUST00000055562 1031 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Lmx1bO88609 Gm4968-201ENSMUST00000071458 858 ntBASIC16.93■□□□□ 0.3
Lmx1bO88609 Runx1-203ENSMUST00000168195 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
Lmx1bO88609 Ppt2-204ENSMUST00000168391 1342 ntAPPRIS P1 TSL 5 BASIC16.93■□□□□ 0.3
Lmx1bO88609 Sptssa-201ENSMUST00000056228 1346 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Lmx1bO88609 Nrm-201ENSMUST00000074259 1466 ntAPPRIS P2 TSL 1 (best) BASIC16.93■□□□□ 0.3
Lmx1bO88609 AW047730-202ENSMUST00000181406 2579 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
Lmx1bO88609 Fzd2-201ENSMUST00000057893 3663 ntAPPRIS P1 BASIC16.92■□□□□ 0.3
Lmx1bO88609 Cfap36-201ENSMUST00000020754 1664 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Lmx1bO88609 Gm7290-201ENSMUST00000104990 617 ntBASIC16.92■□□□□ 0.3
Lmx1bO88609 2610528J11Rik-202ENSMUST00000106367 736 ntAPPRIS P1 TSL 2 BASIC16.92■□□□□ 0.3
Lmx1bO88609 Gm12918-201ENSMUST00000120234 636 ntBASIC16.92■□□□□ 0.3
Lmx1bO88609 Gm15710-201ENSMUST00000121821 636 ntBASIC16.92■□□□□ 0.3
Lmx1bO88609 Gm5075-201ENSMUST00000196916 622 ntBASIC16.92■□□□□ 0.3
Lmx1bO88609 Park7-201ENSMUST00000030805 908 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Lmx1bO88609 Rpl13-ps6-201ENSMUST00000079761 636 ntBASIC16.92■□□□□ 0.3
Lmx1bO88609 Rpl13-ps3-201ENSMUST00000079960 624 ntBASIC16.92■□□□□ 0.3
Lmx1bO88609 Pank2-204ENSMUST00000150843 4266 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Lmx1bO88609 Gm43859-201ENSMUST00000200075 1412 ntBASIC16.92■□□□□ 0.3
Lmx1bO88609 Aifm2-201ENSMUST00000067857 1442 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Lmx1bO88609 Mtmr9-201ENSMUST00000058679 2570 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Lmx1bO88609 Wnt8a-201ENSMUST00000012426 1746 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Lmx1bO88609 Sco1-202ENSMUST00000108690 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
Lmx1bO88609 Rhoa-201ENSMUST00000007959 2197 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Lmx1bO88609 Lefty1-201ENSMUST00000037361 1620 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Lmx1bO88609 Ssbp2-202ENSMUST00000042122 1633 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
Lmx1bO88609 Tuba3a-201ENSMUST00000088246 1509 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Lmx1bO88609 Atrn-201ENSMUST00000028781 8745 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Lmx1bO88609 Ppp1r21-201ENSMUST00000038551 3141 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Lmx1bO88609 1700028I16Rik-201ENSMUST00000076984 1048 ntTSL 5 BASIC16.91■□□□□ 0.3
Lmx1bO88609 Eif4h-205ENSMUST00000202622 2726 ntAPPRIS P3 TSL 1 (best) BASIC16.91■□□□□ 0.3
Lmx1bO88609 Slc25a4-201ENSMUST00000034049 1925 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Lmx1bO88609 Nectin3-201ENSMUST00000023334 3062 ntAPPRIS P4 TSL 1 (best) BASIC16.91■□□□□ 0.3
Lmx1bO88609 Sigmar1-201ENSMUST00000059354 1640 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Lmx1bO88609 Klhdc3-202ENSMUST00000165007 1973 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Lmx1bO88609 Mrpl3-205ENSMUST00000149243 2309 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
Lmx1bO88609 Hmx2-202ENSMUST00000183219 1546 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Lmx1bO88609 Anapc5-208ENSMUST00000197719 2383 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
Lmx1bO88609 Gas2-203ENSMUST00000107591 2232 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Lmx1bO88609 Eefsec-206ENSMUST00000205179 2208 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
Lmx1bO88609 Exoc5-206ENSMUST00000161504 2582 ntTSL 5 BASIC16.9■□□□□ 0.3
Lmx1bO88609 Caml-201ENSMUST00000021963 1382 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Lmx1bO88609 Gm3667-201ENSMUST00000171906 2053 ntAPPRIS P1 TSL 5 BASIC16.9■□□□□ 0.3
Lmx1bO88609 Coq9-201ENSMUST00000034234 1789 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Lmx1bO88609 Cyp4f13-201ENSMUST00000075253 1752 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Lmx1bO88609 Rchy1-204ENSMUST00000169948 1417 ntTSL 3 BASIC16.9■□□□□ 0.3
Lmx1bO88609 Spg7-209ENSMUST00000149248 2896 ntAPPRIS P2 TSL 1 (best) BASIC16.9■□□□□ 0.3
Lmx1bO88609 Gm26708-203ENSMUST00000208236 1624 ntTSL 5 BASIC16.9■□□□□ 0.3
Lmx1bO88609 Tlcd1-201ENSMUST00000092880 2700 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
Lmx1bO88609 Etv2-201ENSMUST00000108147 1048 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Lmx1bO88609 Mgll-203ENSMUST00000113582 1034 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
Lmx1bO88609 Ptbp3-204ENSMUST00000140925 606 ntTSL 3 BASIC16.9■□□□□ 0.3
Lmx1bO88609 Boll-203ENSMUST00000159398 658 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
Lmx1bO88609 Tpsg1-204ENSMUST00000160920 867 ntTSL 3 BASIC16.9■□□□□ 0.3
Lmx1bO88609 Gm6211-202ENSMUST00000167849 925 ntBASIC16.9■□□□□ 0.3
Lmx1bO88609 Gm27032-201ENSMUST00000183124 1116 ntBASIC16.9■□□□□ 0.3
Lmx1bO88609 Slc7a6os-201ENSMUST00000035925 1246 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Lmx1bO88609 9530068E07Rik-202ENSMUST00000109057 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
Lmx1bO88609 Paics-203ENSMUST00000120912 2345 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Lmx1bO88609 Metrn-202ENSMUST00000165838 1363 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.3
Lmx1bO88609 Arid3c-204ENSMUST00000171251 1751 ntAPPRIS P3 TSL 5 BASIC16.89■□□□□ 0.3
Lmx1bO88609 Creb3l1-201ENSMUST00000028663 2603 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Lmx1bO88609 Acot8-202ENSMUST00000103094 1152 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Lmx1bO88609 Gm10653-202ENSMUST00000139570 835 ntBASIC16.89■□□□□ 0.29
Lmx1bO88609 Gm16764-202ENSMUST00000148931 433 ntTSL 5 BASIC16.89■□□□□ 0.29
Lmx1bO88609 Gm17041-201ENSMUST00000163196 479 ntTSL 3 BASIC16.89■□□□□ 0.29
Lmx1bO88609 2300009A05Rik-201ENSMUST00000168665 595 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Lmx1bO88609 1700067K01Rik-203ENSMUST00000172548 986 ntAPPRIS P2 TSL 1 (best) BASIC16.89■□□□□ 0.29
Lmx1bO88609 Acot8-201ENSMUST00000017451 1055 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
Lmx1bO88609 Ndufa12-204ENSMUST00000179990 566 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
Lmx1bO88609 Psenen-201ENSMUST00000043898 708 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Lmx1bO88609 Vgll2-201ENSMUST00000058347 966 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
Lmx1bO88609 Qpct-201ENSMUST00000040789 1924 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Lmx1bO88609 Gm5112-201ENSMUST00000204407 2368 ntBASIC16.89■□□□□ 0.29
Lmx1bO88609 Smtnl2-201ENSMUST00000050226 2624 ntAPPRIS P2 TSL 1 (best) BASIC16.89■□□□□ 0.29
Retrieved 100 of 76,532 protein–RNA pairs in 33.8 ms