Protein–RNA interactions for Protein: Q9ESN2

Trim39, E3 ubiquitin-protein ligase TRIM39, mousemouse

Predictions only

Length 488 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim39Q9ESN2 Gm45062-201ENSMUST00000162564 5842 ntAPPRIS P1 TSL 2 BASIC8.29□□□□□ -1.08
Trim39Q9ESN2 Ttc39c-204ENSMUST00000169401 1950 ntAPPRIS ALT1 TSL 5 BASIC8.29□□□□□ -1.08
Trim39Q9ESN2 Gm29654-201ENSMUST00000186886 2169 ntTSL 1 (best) BASIC8.29□□□□□ -1.08
Trim39Q9ESN2 Gm28226-201ENSMUST00000186916 2169 ntTSL 5 BASIC8.29□□□□□ -1.08
Trim39Q9ESN2 Hnrnpc-209ENSMUST00000228198 2498 ntBASIC8.29□□□□□ -1.08
Trim39Q9ESN2 4921509C19Rik-201ENSMUST00000080132 2684 ntAPPRIS P1 TSL 1 (best) BASIC8.29□□□□□ -1.08
Trim39Q9ESN2 Zfp445-201ENSMUST00000056467 2961 ntAPPRIS P1 TSL 1 (best) BASIC8.29□□□□□ -1.08
Trim39Q9ESN2 Cdk6-202ENSMUST00000165117 11525 ntAPPRIS P1 TSL 1 (best) BASIC8.29□□□□□ -1.08
Trim39Q9ESN2 Ank3-202ENSMUST00000054167 5769 ntAPPRIS ALT2 TSL 5 BASIC8.29□□□□□ -1.08
Trim39Q9ESN2 Drp2-206ENSMUST00000153424 7135 ntAPPRIS P1 TSL 1 (best) BASIC8.29□□□□□ -1.08
Trim39Q9ESN2 Gcnt1-203ENSMUST00000174236 4606 ntAPPRIS P1 TSL 1 (best) BASIC8.29□□□□□ -1.08
Trim39Q9ESN2 Prss35-202ENSMUST00000179574 3211 ntAPPRIS P1 TSL 1 (best) BASIC8.29□□□□□ -1.08
Trim39Q9ESN2 AC155298.3-201ENSMUST00000225307 3220 ntBASIC8.29□□□□□ -1.08
Trim39Q9ESN2 5430401H09Rik-202ENSMUST00000218836 2620 ntTSL 1 (best) BASIC8.29□□□□□ -1.08
Trim39Q9ESN2 Celf2-221ENSMUST00000182706 2525 ntTSL 1 (best) BASIC8.29□□□□□ -1.08
Trim39Q9ESN2 AC154368.2-201ENSMUST00000222334 1724 ntBASIC8.29□□□□□ -1.08
Trim39Q9ESN2 4933406C10Rik-202ENSMUST00000181670 1633 ntTSL 1 (best) BASIC8.29□□□□□ -1.08
Trim39Q9ESN2 4931412I15Rik-201ENSMUST00000207844 1448 ntBASIC8.29□□□□□ -1.08
Trim39Q9ESN2 Gprc5d-201ENSMUST00000032327 1348 ntAPPRIS ALT2 TSL 1 (best) BASIC8.29□□□□□ -1.08
Trim39Q9ESN2 Ryr2-202ENSMUST00000170156 16813 ntAPPRIS ALT2 TSL 5 BASIC8.29□□□□□ -1.08
Trim39Q9ESN2 Ryr2-201ENSMUST00000021750 16814 ntAPPRIS P2 TSL 1 (best) BASIC8.29□□□□□ -1.08
Trim39Q9ESN2 Palb2-202ENSMUST00000098068 3750 ntAPPRIS P3 TSL 1 (best) BASIC8.28□□□□□ -1.08
Trim39Q9ESN2 Unc5c-204ENSMUST00000130636 3595 ntTSL 1 (best) BASIC8.28□□□□□ -1.08
Trim39Q9ESN2 Gucy1b3-204ENSMUST00000193597 3171 ntTSL 1 (best) BASIC8.28□□□□□ -1.08
Trim39Q9ESN2 Gm12108-201ENSMUST00000145338 2589 ntTSL 1 (best) BASIC8.28□□□□□ -1.08
Trim39Q9ESN2 Olfr1212-202ENSMUST00000215781 3636 ntAPPRIS P1 TSL 5 BASIC8.28□□□□□ -1.08
Trim39Q9ESN2 A730065G17Rik-201ENSMUST00000217082 3335 ntTSL 1 (best) BASIC8.28□□□□□ -1.08
Trim39Q9ESN2 D030045P18Rik-201ENSMUST00000213245 1892 ntTSL 1 (best) BASIC8.28□□□□□ -1.08
Trim39Q9ESN2 Wdhd1-204ENSMUST00000187531 4260 ntAPPRIS P5 TSL 5 BASIC8.28□□□□□ -1.08
Trim39Q9ESN2 Gm43679-201ENSMUST00000197051 3677 ntBASIC8.28□□□□□ -1.08
Trim39Q9ESN2 AC107757.2-201ENSMUST00000226370 1466 ntBASIC8.28□□□□□ -1.08
Trim39Q9ESN2 CT025639.1-201ENSMUST00000223906 1375 ntBASIC8.28□□□□□ -1.08
Trim39Q9ESN2 Frmpd4-202ENSMUST00000112146 8153 ntAPPRIS ALT2 TSL 1 (best) BASIC8.28□□□□□ -1.08
Trim39Q9ESN2 Sectm1a-202ENSMUST00000100126 680 ntAPPRIS ALT2 TSL 1 (best) BASIC8.28□□□□□ -1.08
Trim39Q9ESN2 Gm10398-201ENSMUST00000100826 397 ntTSL 1 (best) BASIC8.28□□□□□ -1.08
Trim39Q9ESN2 Rita1-202ENSMUST00000111884 733 ntTSL 2 BASIC8.28□□□□□ -1.08
Trim39Q9ESN2 Gm7331-201ENSMUST00000118642 387 ntBASIC8.28□□□□□ -1.08
Trim39Q9ESN2 Gm4342-201ENSMUST00000118982 367 ntBASIC8.28□□□□□ -1.08
Trim39Q9ESN2 Gm11991-201ENSMUST00000119652 1074 ntBASIC8.28□□□□□ -1.08
Trim39Q9ESN2 Gm9435-201ENSMUST00000120379 877 ntBASIC8.28□□□□□ -1.08
Trim39Q9ESN2 Gm13217-201ENSMUST00000120466 953 ntBASIC8.28□□□□□ -1.08
Trim39Q9ESN2 Gm5394-201ENSMUST00000121935 975 ntBASIC8.28□□□□□ -1.08
Trim39Q9ESN2 Gm4996-201ENSMUST00000122042 784 ntBASIC8.28□□□□□ -1.08
Trim39Q9ESN2 Gm12551-201ENSMUST00000122073 726 ntBASIC8.28□□□□□ -1.08
Trim39Q9ESN2 Gm22481-201ENSMUST00000122562 192 ntBASIC8.28□□□□□ -1.08
Trim39Q9ESN2 Gm12796-201ENSMUST00000131864 344 ntTSL 1 (best) BASIC8.28□□□□□ -1.08
Trim39Q9ESN2 Snhg12-206ENSMUST00000153474 606 ntTSL 2 BASIC8.28□□□□□ -1.08
Trim39Q9ESN2 Gm25413-201ENSMUST00000158544 312 ntBASIC8.28□□□□□ -1.08
Trim39Q9ESN2 Gm17450-201ENSMUST00000164671 426 ntBASIC8.28□□□□□ -1.08
Trim39Q9ESN2 Uba52-208ENSMUST00000165126 387 ntAPPRIS P1 TSL 1 (best) BASIC8.28□□□□□ -1.08
Trim39Q9ESN2 Gm21962-201ENSMUST00000166899 1017 ntAPPRIS P1 BASIC8.28□□□□□ -1.08
Trim39Q9ESN2 Gm17750-201ENSMUST00000182477 529 ntTSL 1 (best) BASIC8.28□□□□□ -1.08
Trim39Q9ESN2 Ly6e-207ENSMUST00000187606 735 ntAPPRIS P1 TSL 2 BASIC8.28□□□□□ -1.08
Trim39Q9ESN2 Scgb1b8-ps-201ENSMUST00000189652 249 ntBASIC8.28□□□□□ -1.08
Trim39Q9ESN2 Gm28342-201ENSMUST00000190308 589 ntTSL 3 BASIC8.28□□□□□ -1.08
Trim39Q9ESN2 1700063D05Rik-203ENSMUST00000191461 666 ntTSL 2 BASIC8.28□□□□□ -1.08
Trim39Q9ESN2 4930433B08Rik-201ENSMUST00000192010 644 ntTSL 1 (best) BASIC8.28□□□□□ -1.08
Trim39Q9ESN2 Gm26930-201ENSMUST00000194874 1244 ntBASIC8.28□□□□□ -1.08
Trim39Q9ESN2 Gm37486-201ENSMUST00000195663 405 ntBASIC8.28□□□□□ -1.08
Trim39Q9ESN2 Obox4-ps24-201ENSMUST00000197686 540 ntBASIC8.28□□□□□ -1.08
Trim39Q9ESN2 Gm7824-201ENSMUST00000198301 532 ntBASIC8.28□□□□□ -1.08
Trim39Q9ESN2 Gm43005-201ENSMUST00000199015 648 ntBASIC8.28□□□□□ -1.08
Trim39Q9ESN2 Crip1-205ENSMUST00000199089 509 ntTSL 3 BASIC8.28□□□□□ -1.08
Trim39Q9ESN2 Gm34664-202ENSMUST00000207661 1032 ntTSL 5 BASIC8.28□□□□□ -1.08
Trim39Q9ESN2 Cd209a-204ENSMUST00000208960 844 ntAPPRIS ALT2 TSL 5 BASIC8.28□□□□□ -1.08
Trim39Q9ESN2 Gm45382-201ENSMUST00000210607 151 ntBASIC8.28□□□□□ -1.08
Trim39Q9ESN2 Flt3l-210ENSMUST00000211246 852 ntAPPRIS ALT2 TSL 1 (best) BASIC8.28□□□□□ -1.08
Trim39Q9ESN2 Gm45788-201ENSMUST00000212210 584 ntTSL 3 BASIC8.28□□□□□ -1.08
Trim39Q9ESN2 Gm3953-201ENSMUST00000213963 789 ntBASIC8.28□□□□□ -1.08
Trim39Q9ESN2 C030006N10Rik-201ENSMUST00000219077 517 ntBASIC8.28□□□□□ -1.08
Trim39Q9ESN2 Glipr1l3-201ENSMUST00000220085 892 ntAPPRIS P1 TSL 5 BASIC8.28□□□□□ -1.08
Trim39Q9ESN2 AC116465.1-201ENSMUST00000220324 235 ntBASIC8.28□□□□□ -1.08
Trim39Q9ESN2 AC154347.2-201ENSMUST00000221223 715 ntTSL 3 BASIC8.28□□□□□ -1.08
Trim39Q9ESN2 AC107369.2-201ENSMUST00000226154 916 ntBASIC8.28□□□□□ -1.08
Trim39Q9ESN2 Olfr685-201ENSMUST00000051355 1088 ntAPPRIS P2 BASIC8.28□□□□□ -1.08
Trim39Q9ESN2 4931417E11Rik-201ENSMUST00000070163 1095 ntAPPRIS P1 BASIC8.28□□□□□ -1.08
Trim39Q9ESN2 Defa21-201ENSMUST00000076754 418 ntAPPRIS P1 TSL 1 (best) BASIC8.28□□□□□ -1.08
Trim39Q9ESN2 Psme1-201ENSMUST00000089619 711 ntTSL 5 BASIC8.28□□□□□ -1.08
Trim39Q9ESN2 Nps-201ENSMUST00000097983 840 ntAPPRIS P1 TSL 5 BASIC8.28□□□□□ -1.08
Trim39Q9ESN2 Defa22-201ENSMUST00000098897 419 ntAPPRIS P1 TSL 1 (best) BASIC8.28□□□□□ -1.08
Trim39Q9ESN2 Gapt-202ENSMUST00000224534 2016 ntAPPRIS P1 BASIC8.28□□□□□ -1.08
Trim39Q9ESN2 Vegfd-201ENSMUST00000033751 2049 ntAPPRIS P1 TSL 1 (best) BASIC8.28□□□□□ -1.08
Trim39Q9ESN2 Gm4349-201ENSMUST00000181809 2559 ntTSL 1 (best) BASIC8.28□□□□□ -1.08
Trim39Q9ESN2 Gm35934-201ENSMUST00000213002 2494 ntTSL 5 BASIC8.28□□□□□ -1.08
Trim39Q9ESN2 Olfr374-202ENSMUST00000210435 8718 ntAPPRIS P1 TSL 2 BASIC8.28□□□□□ -1.08
Trim39Q9ESN2 Thnsl1-202ENSMUST00000102951 1707 ntTSL 1 (best) BASIC8.28□□□□□ -1.08
Trim39Q9ESN2 Gm14139-201ENSMUST00000109926 1728 ntAPPRIS P1 TSL 2 BASIC8.28□□□□□ -1.08
Trim39Q9ESN2 Vwa3b-203ENSMUST00000117172 1636 ntAPPRIS P5 TSL 2 BASIC8.28□□□□□ -1.08
Trim39Q9ESN2 Gm37366-201ENSMUST00000194487 2297 ntBASIC8.28□□□□□ -1.08
Trim39Q9ESN2 Txnip-202ENSMUST00000074519 2827 ntAPPRIS ALT2 TSL 1 (best) BASIC8.28□□□□□ -1.08
Trim39Q9ESN2 Ltn1-201ENSMUST00000039449 7737 ntAPPRIS P1 TSL 1 (best) BASIC8.28□□□□□ -1.08
Trim39Q9ESN2 Odf2-206ENSMUST00000113759 3807 ntAPPRIS ALT2 TSL 1 (best) BASIC8.28□□□□□ -1.08
Trim39Q9ESN2 Fam216b-202ENSMUST00000118785 1447 ntTSL 5 BASIC8.28□□□□□ -1.08
Trim39Q9ESN2 Gm34297-201ENSMUST00000218569 1980 ntTSL 5 BASIC8.28□□□□□ -1.08
Trim39Q9ESN2 Glipr1l2-201ENSMUST00000020434 1879 ntAPPRIS P3 TSL 1 (best) BASIC8.28□□□□□ -1.08
Trim39Q9ESN2 Cdh5-201ENSMUST00000034339 3995 ntAPPRIS P1 TSL 1 (best) BASIC8.28□□□□□ -1.08
Trim39Q9ESN2 Mpp7-201ENSMUST00000115869 4975 ntAPPRIS P1 TSL 5 BASIC8.28□□□□□ -1.08
Trim39Q9ESN2 Gm12661-201ENSMUST00000118780 3335 ntBASIC8.28□□□□□ -1.08
Trim39Q9ESN2 Taf12-201ENSMUST00000030731 3787 ntAPPRIS P1 TSL 1 (best) BASIC8.27□□□□□ -1.08
Trim39Q9ESN2 Lamb3-202ENSMUST00000159955 4013 ntAPPRIS P1 TSL 1 (best) BASIC8.27□□□□□ -1.08
Retrieved 100 of 76,532 protein–RNA pairs in 81.5 ms