Protein–RNA interactions for Protein: Q8CEI3

Ccdc28a, Coiled-coil domain-containing 28A, mousemouse

Predictions only

Length 192 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc28aQ8CEI3 Gm3448-201ENSMUST00000097399 787 ntAPPRIS P5 TSL 1 (best) BASIC19.83■□□□□ 0.77
Ccdc28aQ8CEI3 Gm7856-201ENSMUST00000117514 1493 ntBASIC19.83■□□□□ 0.76
Ccdc28aQ8CEI3 Snx16-202ENSMUST00000099223 2512 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.76
Ccdc28aQ8CEI3 Alg1-201ENSMUST00000049207 1669 ntAPPRIS ALT2 TSL 2 BASIC19.83■□□□□ 0.76
Ccdc28aQ8CEI3 Rock2-201ENSMUST00000020904 7644 ntAPPRIS P1 TSL 5 BASIC19.83■□□□□ 0.76
Ccdc28aQ8CEI3 Swsap1-201ENSMUST00000053583 1838 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
Ccdc28aQ8CEI3 Gm15853-202ENSMUST00000195518 2041 ntBASIC19.83■□□□□ 0.76
Ccdc28aQ8CEI3 Camta1-204ENSMUST00000105670 4961 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
Ccdc28aQ8CEI3 Grk6-206ENSMUST00000224995 2971 ntBASIC19.83■□□□□ 0.76
Ccdc28aQ8CEI3 Rad1-201ENSMUST00000022856 1514 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Ccdc28aQ8CEI3 Cxxc1-201ENSMUST00000025444 2618 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Ccdc28aQ8CEI3 Gpc6-204ENSMUST00000125435 2423 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
Ccdc28aQ8CEI3 Cnn3-201ENSMUST00000029773 2049 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Ccdc28aQ8CEI3 4930539J05Rik-202ENSMUST00000182865 511 ntTSL 2 BASIC19.82■□□□□ 0.76
Ccdc28aQ8CEI3 1700097N02Rik-201ENSMUST00000188852 845 ntTSL 3 BASIC19.82■□□□□ 0.76
Ccdc28aQ8CEI3 Ntsr2-202ENSMUST00000220892 846 ntTSL 3 BASIC19.82■□□□□ 0.76
Ccdc28aQ8CEI3 Gm5576-201ENSMUST00000075809 1236 ntBASIC19.82■□□□□ 0.76
Ccdc28aQ8CEI3 BC034090-204ENSMUST00000186156 4873 ntAPPRIS P5 TSL 5 BASIC19.82■□□□□ 0.76
Ccdc28aQ8CEI3 Tfeb-203ENSMUST00000113284 1974 ntTSL 5 BASIC19.82■□□□□ 0.76
Ccdc28aQ8CEI3 Ciz1-205ENSMUST00000113338 2666 ntAPPRIS P3 TSL 5 BASIC19.82■□□□□ 0.76
Ccdc28aQ8CEI3 Azi2-207ENSMUST00000134433 2499 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
Ccdc28aQ8CEI3 Gm5953-201ENSMUST00000220644 2616 ntBASIC19.82■□□□□ 0.76
Ccdc28aQ8CEI3 Nmnat3-202ENSMUST00000112937 1898 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
Ccdc28aQ8CEI3 Arx-201ENSMUST00000046565 2881 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Ccdc28aQ8CEI3 Tmem39b-201ENSMUST00000102588 1810 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Ccdc28aQ8CEI3 Znrf1-205ENSMUST00000172856 4600 ntAPPRIS P1 TSL 5 BASIC19.81■□□□□ 0.76
Ccdc28aQ8CEI3 Gm9922-201ENSMUST00000066461 435 ntAPPRIS P1 BASIC19.81■□□□□ 0.76
Ccdc28aQ8CEI3 Hcn2-202ENSMUST00000099513 3195 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Ccdc28aQ8CEI3 Tial1-201ENSMUST00000033135 1580 ntAPPRIS ALT1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Ccdc28aQ8CEI3 Igsf8-202ENSMUST00000085912 2182 ntAPPRIS P1 TSL 5 BASIC19.81■□□□□ 0.76
Ccdc28aQ8CEI3 Dolk-201ENSMUST00000100219 2104 ntAPPRIS P1 BASIC19.81■□□□□ 0.76
Ccdc28aQ8CEI3 Ahr-202ENSMUST00000116436 5548 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Ccdc28aQ8CEI3 Leng1-201ENSMUST00000019878 2222 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Ccdc28aQ8CEI3 Mzt1-201ENSMUST00000042662 2240 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Ccdc28aQ8CEI3 Irgq-201ENSMUST00000049020 6083 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Ccdc28aQ8CEI3 Trim47-202ENSMUST00000106441 2192 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
Ccdc28aQ8CEI3 Lrrc43-201ENSMUST00000094327 2046 ntAPPRIS P3 TSL 1 (best) BASIC19.8■□□□□ 0.76
Ccdc28aQ8CEI3 Zfp644-205ENSMUST00000112698 5689 ntAPPRIS P2 TSL 5 BASIC19.8■□□□□ 0.76
Ccdc28aQ8CEI3 Bex1-202ENSMUST00000113118 754 ntAPPRIS P1 TSL 2 BASIC19.8■□□□□ 0.76
Ccdc28aQ8CEI3 Krt4-201ENSMUST00000023797 2132 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Ccdc28aQ8CEI3 Gm26798-201ENSMUST00000181384 2837 ntTSL 5 BASIC19.8■□□□□ 0.76
Ccdc28aQ8CEI3 Tpra1-201ENSMUST00000055022 1820 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Ccdc28aQ8CEI3 Tesk1-201ENSMUST00000060864 3947 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Ccdc28aQ8CEI3 Dmtn-210ENSMUST00000228824 2377 ntBASIC19.8■□□□□ 0.76
Ccdc28aQ8CEI3 Cblc-201ENSMUST00000043822 1662 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Ccdc28aQ8CEI3 Chst7-201ENSMUST00000044138 2206 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Ccdc28aQ8CEI3 Eid2b-201ENSMUST00000094651 1751 ntAPPRIS P1 BASIC19.8■□□□□ 0.76
Ccdc28aQ8CEI3 Vapa-201ENSMUST00000024897 1640 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Ccdc28aQ8CEI3 Abr-202ENSMUST00000072740 5394 ntAPPRIS P1 TSL 5 BASIC19.8■□□□□ 0.76
Ccdc28aQ8CEI3 Gpc3-202ENSMUST00000114857 1880 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
Ccdc28aQ8CEI3 Atf5-202ENSMUST00000107893 1735 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Ccdc28aQ8CEI3 Dgke-202ENSMUST00000107894 8347 ntAPPRIS P1 TSL 5 BASIC19.79■□□□□ 0.76
Ccdc28aQ8CEI3 Elac2-201ENSMUST00000071891 2771 ntAPPRIS P2 TSL 1 (best) BASIC19.79■□□□□ 0.76
Ccdc28aQ8CEI3 Cyb5r4-201ENSMUST00000168529 2644 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Ccdc28aQ8CEI3 Fem1c-201ENSMUST00000036226 5726 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Ccdc28aQ8CEI3 Spata2l-202ENSMUST00000166768 2707 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Ccdc28aQ8CEI3 Trim58-201ENSMUST00000075084 2192 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Ccdc28aQ8CEI3 Bhlhe22-201ENSMUST00000026120 3344 ntAPPRIS P1 BASIC19.79■□□□□ 0.76
Ccdc28aQ8CEI3 Gabra4-205ENSMUST00000199357 2407 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
Ccdc28aQ8CEI3 D630002J18Rik-201ENSMUST00000181854 1115 ntBASIC19.79■□□□□ 0.76
Ccdc28aQ8CEI3 Hspb1-201ENSMUST00000005077 903 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Ccdc28aQ8CEI3 Maff-201ENSMUST00000096350 1933 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Ccdc28aQ8CEI3 Nat14-204ENSMUST00000207687 1415 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Ccdc28aQ8CEI3 Spire1-203ENSMUST00000115050 5405 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
Ccdc28aQ8CEI3 Nkd1-201ENSMUST00000034086 3035 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Ccdc28aQ8CEI3 Rfxap-204ENSMUST00000217267 696 ntAPPRIS P2 TSL 1 (best) BASIC19.78■□□□□ 0.76
Ccdc28aQ8CEI3 Cdc42ep5-201ENSMUST00000076831 1025 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Ccdc28aQ8CEI3 Fam43b-201ENSMUST00000105032 2437 ntAPPRIS P1 BASIC19.78■□□□□ 0.76
Ccdc28aQ8CEI3 9330171B17Rik-201ENSMUST00000035939 2073 ntBASIC19.78■□□□□ 0.76
Ccdc28aQ8CEI3 Gm43182-201ENSMUST00000199476 2528 ntBASIC19.78■□□□□ 0.76
Ccdc28aQ8CEI3 Deptor-203ENSMUST00000100660 1377 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
Ccdc28aQ8CEI3 Mdfi-201ENSMUST00000035375 1371 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Ccdc28aQ8CEI3 1700086O06Rik-202ENSMUST00000181871 1564 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
Ccdc28aQ8CEI3 Actl6a-201ENSMUST00000029214 2010 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Ccdc28aQ8CEI3 Pigw-201ENSMUST00000067058 2675 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Ccdc28aQ8CEI3 Nkx2-1-202ENSMUST00000178477 2242 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Ccdc28aQ8CEI3 Crocc-211ENSMUST00000168157 6244 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
Ccdc28aQ8CEI3 Bicdl1-203ENSMUST00000118576 1874 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
Ccdc28aQ8CEI3 Atp8b2-202ENSMUST00000107396 5705 ntAPPRIS ALT2 TSL 5 BASIC19.77■□□□□ 0.76
Ccdc28aQ8CEI3 Rnf112-201ENSMUST00000054927 3086 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
Ccdc28aQ8CEI3 Rchy1-201ENSMUST00000031345 1967 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Ccdc28aQ8CEI3 Zfp282-201ENSMUST00000061890 5573 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Ccdc28aQ8CEI3 Ssc4d-203ENSMUST00000111152 2745 ntAPPRIS P1 TSL 5 BASIC19.77■□□□□ 0.76
Ccdc28aQ8CEI3 Prob1-203ENSMUST00000190196 4888 ntAPPRIS P1 BASIC19.77■□□□□ 0.76
Ccdc28aQ8CEI3 Espn-203ENSMUST00000070018 1618 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
Ccdc28aQ8CEI3 Dmwd-202ENSMUST00000108479 2388 ntAPPRIS ALT2 TSL 5 BASIC19.77■□□□□ 0.76
Ccdc28aQ8CEI3 Foxp1-230ENSMUST00000177437 2468 ntAPPRIS P2 TSL 1 (best) BASIC19.77■□□□□ 0.76
Ccdc28aQ8CEI3 Olfm2-204ENSMUST00000217198 2005 ntAPPRIS ALT2 TSL 3 BASIC19.77■□□□□ 0.76
Ccdc28aQ8CEI3 Zfp335os-201ENSMUST00000129364 1127 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
Ccdc28aQ8CEI3 Usf2-211ENSMUST00000172417 648 ntTSL 5 BASIC19.77■□□□□ 0.76
Ccdc28aQ8CEI3 Gm20522-201ENSMUST00000173576 784 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
Ccdc28aQ8CEI3 Rhbdd3-202ENSMUST00000101610 2333 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Ccdc28aQ8CEI3 Gorasp2-202ENSMUST00000112201 2417 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.76
Ccdc28aQ8CEI3 Actl6b-205ENSMUST00000139395 1592 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Ccdc28aQ8CEI3 A130051J06Rik-201ENSMUST00000180649 2618 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
Ccdc28aQ8CEI3 Smyd2-201ENSMUST00000027897 1680 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Ccdc28aQ8CEI3 Pacsin3-203ENSMUST00000111349 1993 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.75
Ccdc28aQ8CEI3 Socs6-203ENSMUST00000125362 2814 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Ccdc28aQ8CEI3 Dlgap2-203ENSMUST00000133298 4503 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
Ccdc28aQ8CEI3 Bsg-205ENSMUST00000179781 1261 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
Retrieved 100 of 76,532 protein–RNA pairs in 35.8 ms