Protein–RNA interactions for Protein: Q8BXJ2

Trerf1, Transcriptional-regulating factor 1, mousemouse

Predictions only

Length 1,205 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trerf1Q8BXJ2 Gbx1-201ENSMUST00000088311 3475 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Trerf1Q8BXJ2 Dapk1-207ENSMUST00000226059 5009 ntBASIC19.69■□□□□ 0.74
Trerf1Q8BXJ2 Nfix-204ENSMUST00000109764 5476 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
Trerf1Q8BXJ2 Memo1-201ENSMUST00000078459 1513 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Trerf1Q8BXJ2 Cxadr-201ENSMUST00000023572 5734 ntAPPRIS P3 TSL 1 (best) BASIC19.68■□□□□ 0.74
Trerf1Q8BXJ2 Matk-205ENSMUST00000121205 1841 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
Trerf1Q8BXJ2 Cldn23-201ENSMUST00000060128 1848 ntAPPRIS P1 BASIC19.68■□□□□ 0.74
Trerf1Q8BXJ2 Gm12660-201ENSMUST00000123764 664 ntTSL 3 BASIC19.68■□□□□ 0.74
Trerf1Q8BXJ2 Chrac1-202ENSMUST00000134353 538 ntAPPRIS ALT2 TSL 2 BASIC19.68■□□□□ 0.74
Trerf1Q8BXJ2 Gm45168-202ENSMUST00000206461 1069 ntTSL 5 BASIC19.68■□□□□ 0.74
Trerf1Q8BXJ2 Spaca1-201ENSMUST00000029927 1197 ntAPPRIS P3 TSL 1 (best) BASIC19.68■□□□□ 0.74
Trerf1Q8BXJ2 Ferd3l-201ENSMUST00000061035 886 ntAPPRIS P1 BASIC19.68■□□□□ 0.74
Trerf1Q8BXJ2 Spaca1-202ENSMUST00000084734 1149 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
Trerf1Q8BXJ2 Pus1-201ENSMUST00000031481 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
Trerf1Q8BXJ2 Lrfn4-201ENSMUST00000053597 3194 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Trerf1Q8BXJ2 Mreg-201ENSMUST00000048860 2284 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Trerf1Q8BXJ2 Rfk-201ENSMUST00000025617 2482 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Trerf1Q8BXJ2 Dock9-202ENSMUST00000100299 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
Trerf1Q8BXJ2 Zfp213-201ENSMUST00000095606 2672 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Trerf1Q8BXJ2 Barx2-201ENSMUST00000116615 1968 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Trerf1Q8BXJ2 Sncaip-205ENSMUST00000178011 3433 ntAPPRIS P3 TSL 1 (best) BASIC19.67■□□□□ 0.74
Trerf1Q8BXJ2 AC122828.1-201ENSMUST00000220785 489 ntTSL 3 BASIC19.67■□□□□ 0.74
Trerf1Q8BXJ2 Sdf2l1-201ENSMUST00000023453 1108 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Trerf1Q8BXJ2 Igfbp6-201ENSMUST00000023807 1112 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Trerf1Q8BXJ2 Tmem171-201ENSMUST00000064347 1161 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Trerf1Q8BXJ2 Gm10493-201ENSMUST00000097270 612 ntBASIC19.67■□□□□ 0.74
Trerf1Q8BXJ2 6820408C15Rik-201ENSMUST00000039961 1684 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Trerf1Q8BXJ2 Aire-203ENSMUST00000105396 1749 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
Trerf1Q8BXJ2 Aire-214ENSMUST00000154374 1712 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
Trerf1Q8BXJ2 Aire-215ENSMUST00000155021 1737 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
Trerf1Q8BXJ2 E4f1-205ENSMUST00000226941 2642 ntAPPRIS ALT2 BASIC19.67■□□□□ 0.74
Trerf1Q8BXJ2 Mmp15-201ENSMUST00000034243 5135 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Trerf1Q8BXJ2 Ttc9-202ENSMUST00000218362 4754 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Trerf1Q8BXJ2 Cobll1-202ENSMUST00000102726 5031 ntAPPRIS P3 TSL 1 (best) BASIC19.66■□□□□ 0.74
Trerf1Q8BXJ2 Cobll1-203ENSMUST00000112429 5045 ntAPPRIS ALT2 TSL 5 BASIC19.66■□□□□ 0.74
Trerf1Q8BXJ2 B130046B21Rik-201ENSMUST00000181510 2216 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
Trerf1Q8BXJ2 Rela-201ENSMUST00000025867 2716 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Trerf1Q8BXJ2 Gas5-217ENSMUST00000161005 430 ntTSL 5 BASIC19.66■□□□□ 0.74
Trerf1Q8BXJ2 Smox-202ENSMUST00000110179 1320 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
Trerf1Q8BXJ2 Ttyh3-201ENSMUST00000042661 4658 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Trerf1Q8BXJ2 Rbm38-204ENSMUST00000173393 2071 ntAPPRIS P1 TSL 5 BASIC19.66■□□□□ 0.74
Trerf1Q8BXJ2 Wasf3-201ENSMUST00000016143 5196 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Trerf1Q8BXJ2 Sco1-202ENSMUST00000108690 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
Trerf1Q8BXJ2 Mta1-201ENSMUST00000009099 2826 ntAPPRIS ALT2 TSL 5 BASIC19.66■□□□□ 0.74
Trerf1Q8BXJ2 Nptxr-201ENSMUST00000023057 5004 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
Trerf1Q8BXJ2 Ankrd9-202ENSMUST00000128353 2577 ntAPPRIS P2 TSL 1 (best) BASIC19.65■□□□□ 0.74
Trerf1Q8BXJ2 Tsen54-202ENSMUST00000106481 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
Trerf1Q8BXJ2 Olfm2-204ENSMUST00000217198 2005 ntAPPRIS ALT2 TSL 3 BASIC19.65■□□□□ 0.74
Trerf1Q8BXJ2 Antxr1-201ENSMUST00000042025 5253 ntAPPRIS P2 TSL 1 (best) BASIC19.65■□□□□ 0.74
Trerf1Q8BXJ2 Hdgfl3-201ENSMUST00000026094 2865 ntAPPRIS ALT1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Trerf1Q8BXJ2 Neto2-205ENSMUST00000216286 2932 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Trerf1Q8BXJ2 Gm20421-201ENSMUST00000153344 672 ntTSL 3 BASIC19.65■□□□□ 0.74
Trerf1Q8BXJ2 Sirpa-209ENSMUST00000160276 876 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
Trerf1Q8BXJ2 Hes3-202ENSMUST00000218045 962 ntAPPRIS ALT2 TSL 5 BASIC19.65■□□□□ 0.74
Trerf1Q8BXJ2 Dusp15-201ENSMUST00000037715 715 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
Trerf1Q8BXJ2 Gpr3-201ENSMUST00000052090 1116 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Trerf1Q8BXJ2 Fabp3-201ENSMUST00000070532 823 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Trerf1Q8BXJ2 Fam189a1-201ENSMUST00000119118 4801 ntAPPRIS P1 TSL 5 BASIC19.65■□□□□ 0.74
Trerf1Q8BXJ2 Tub-201ENSMUST00000033341 5997 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Trerf1Q8BXJ2 Hat1-202ENSMUST00000112122 1899 ntAPPRIS ALT2 TSL 5 BASIC19.65■□□□□ 0.74
Trerf1Q8BXJ2 Nfkbid-203ENSMUST00000108176 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.74
Trerf1Q8BXJ2 Stum-202ENSMUST00000179826 601 ntAPPRIS ALT1 TSL 5 BASIC19.64■□□□□ 0.73
Trerf1Q8BXJ2 Gm27801-201ENSMUST00000184174 223 ntBASIC19.64■□□□□ 0.73
Trerf1Q8BXJ2 Ttc39a-203ENSMUST00000106619 1778 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
Trerf1Q8BXJ2 1700123O20Rik-201ENSMUST00000038539 1843 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Trerf1Q8BXJ2 Tesmin-204ENSMUST00000151341 2013 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
Trerf1Q8BXJ2 Mall-201ENSMUST00000028856 2006 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Trerf1Q8BXJ2 Paqr4-201ENSMUST00000024702 2507 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Trerf1Q8BXJ2 Adgra2-202ENSMUST00000178514 5129 ntTSL 5 BASIC19.64■□□□□ 0.73
Trerf1Q8BXJ2 Bcl11b-203ENSMUST00000109891 2888 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
Trerf1Q8BXJ2 Ints6-201ENSMUST00000053959 4993 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Trerf1Q8BXJ2 Gm10129-202ENSMUST00000193100 1316 ntBASIC19.63■□□□□ 0.73
Trerf1Q8BXJ2 Mcub-201ENSMUST00000029624 1318 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Trerf1Q8BXJ2 Stmn4-202ENSMUST00000118426 1281 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
Trerf1Q8BXJ2 Pianp-204ENSMUST00000160704 1116 ntAPPRIS P2 TSL 1 (best) BASIC19.63■□□□□ 0.73
Trerf1Q8BXJ2 Nek9-201ENSMUST00000040992 5386 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Trerf1Q8BXJ2 Raver2-201ENSMUST00000038463 4045 ntAPPRIS P2 TSL 1 (best) BASIC19.63■□□□□ 0.73
Trerf1Q8BXJ2 Maff-202ENSMUST00000163691 1905 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Trerf1Q8BXJ2 Ube2z-201ENSMUST00000100528 3997 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Trerf1Q8BXJ2 Pknox2-201ENSMUST00000039674 3632 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Trerf1Q8BXJ2 Col17a1-201ENSMUST00000026045 5588 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
Trerf1Q8BXJ2 Tmem44-204ENSMUST00000140402 2405 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Trerf1Q8BXJ2 Fbxl3-201ENSMUST00000022720 4309 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Trerf1Q8BXJ2 Lrrc36-204ENSMUST00000213547 2396 ntAPPRIS ALT2 TSL 5 BASIC19.62■□□□□ 0.73
Trerf1Q8BXJ2 Rasl10b-204ENSMUST00000175848 3249 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
Trerf1Q8BXJ2 Mms22l-205ENSMUST00000138567 1350 ntTSL 2 BASIC19.62■□□□□ 0.73
Trerf1Q8BXJ2 Acvr2b-205ENSMUST00000215746 3175 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Trerf1Q8BXJ2 Dhps-201ENSMUST00000078665 1333 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Trerf1Q8BXJ2 Amfr-201ENSMUST00000053766 3880 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Trerf1Q8BXJ2 Gm11691-201ENSMUST00000130963 658 ntTSL 2 BASIC19.62■□□□□ 0.73
Trerf1Q8BXJ2 4930444P10Rik-203ENSMUST00000151004 1001 ntAPPRIS P2 TSL 3 BASIC19.62■□□□□ 0.73
Trerf1Q8BXJ2 1700012B09Rik-204ENSMUST00000191047 654 ntAPPRIS ALT2 TSL 3 BASIC19.62■□□□□ 0.73
Trerf1Q8BXJ2 Gpx1-202ENSMUST00000191997 787 ntTSL 2 BASIC19.62■□□□□ 0.73
Trerf1Q8BXJ2 Foxa2-201ENSMUST00000047315 2128 ntAPPRIS P3 TSL 1 (best) BASIC19.62■□□□□ 0.73
Trerf1Q8BXJ2 Gpx1-201ENSMUST00000082429 1072 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Trerf1Q8BXJ2 Gm10153-201ENSMUST00000084415 522 ntTSL 5 BASIC19.62■□□□□ 0.73
Trerf1Q8BXJ2 Znrf1-205ENSMUST00000172856 4600 ntAPPRIS P1 TSL 5 BASIC19.62■□□□□ 0.73
Trerf1Q8BXJ2 Rhbdf1-201ENSMUST00000020524 2946 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Trerf1Q8BXJ2 Plekhg3-201ENSMUST00000075249 5138 ntAPPRIS P2 TSL 1 (best) BASIC19.62■□□□□ 0.73
Trerf1Q8BXJ2 Dlgap2-209ENSMUST00000152652 3842 ntAPPRIS P4 TSL 1 (best) BASIC19.62■□□□□ 0.73
Retrieved 100 of 76,532 protein–RNA pairs in 20.8 ms