Protein–RNA interactions for Protein: Q8BI79

Ccdc40, Coiled-coil domain-containing protein 40, mousemouse

Predictions only

Length 1,192 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc40Q8BI79 Neto2-205ENSMUST00000216286 2932 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
Ccdc40Q8BI79 Cobll1-202ENSMUST00000102726 5031 ntAPPRIS P3 TSL 1 (best) BASIC19.52■□□□□ 0.71
Ccdc40Q8BI79 Cobll1-203ENSMUST00000112429 5045 ntAPPRIS ALT2 TSL 5 BASIC19.52■□□□□ 0.71
Ccdc40Q8BI79 Gm32699-201ENSMUST00000221728 1988 ntBASIC19.52■□□□□ 0.71
Ccdc40Q8BI79 Nudt11-201ENSMUST00000103007 3036 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Ccdc40Q8BI79 Rin3-202ENSMUST00000101114 2394 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
Ccdc40Q8BI79 Klhl2-201ENSMUST00000034017 3412 ntAPPRIS P2 TSL 1 (best) BASIC19.51■□□□□ 0.71
Ccdc40Q8BI79 Hoxa11os-201ENSMUST00000134512 1839 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
Ccdc40Q8BI79 Meis3-205ENSMUST00000176506 1839 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
Ccdc40Q8BI79 Ciapin1-201ENSMUST00000034233 1807 ntAPPRIS P1 TSL 5 BASIC19.51■□□□□ 0.71
Ccdc40Q8BI79 Akt1s1-203ENSMUST00000107882 1160 ntAPPRIS ALT2 TSL 3 BASIC19.51■□□□□ 0.71
Ccdc40Q8BI79 Gng5-203ENSMUST00000119130 593 ntTSL 2 BASIC19.51■□□□□ 0.71
Ccdc40Q8BI79 Grb14-201ENSMUST00000028252 1986 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Ccdc40Q8BI79 Tcp11-201ENSMUST00000042692 1984 ntAPPRIS P3 TSL 1 (best) BASIC19.51■□□□□ 0.71
Ccdc40Q8BI79 Csnk1a1-206ENSMUST00000165721 2323 ntAPPRIS ALT1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Ccdc40Q8BI79 Cwh43-202ENSMUST00000065543 2316 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
Ccdc40Q8BI79 Ddx41-201ENSMUST00000021956 2205 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Ccdc40Q8BI79 Lrrc58-201ENSMUST00000078717 8604 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Ccdc40Q8BI79 Nenf-201ENSMUST00000046770 742 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Ccdc40Q8BI79 Ninj1-201ENSMUST00000049022 1187 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Ccdc40Q8BI79 Hyi-201ENSMUST00000006562 910 ntAPPRIS P1 TSL 5 BASIC19.5■□□□□ 0.71
Ccdc40Q8BI79 Ascl4-202ENSMUST00000170396 2016 ntAPPRIS P1 BASIC19.5■□□□□ 0.71
Ccdc40Q8BI79 Mpg-201ENSMUST00000020528 1737 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Ccdc40Q8BI79 Dxo-201ENSMUST00000046244 1519 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Ccdc40Q8BI79 Ak5-201ENSMUST00000045262 3323 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Ccdc40Q8BI79 Zfp644-204ENSMUST00000112696 5785 ntAPPRIS ALT2 TSL 5 BASIC19.49■□□□□ 0.71
Ccdc40Q8BI79 Lats2-201ENSMUST00000022531 5191 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Ccdc40Q8BI79 Tmem164-201ENSMUST00000087333 5149 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Ccdc40Q8BI79 Dnaja4-202ENSMUST00000120452 1827 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Ccdc40Q8BI79 Snap91-201ENSMUST00000036347 4237 ntAPPRIS ALT2 TSL 5 BASIC19.49■□□□□ 0.71
Ccdc40Q8BI79 Ism1-202ENSMUST00000184404 2964 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Ccdc40Q8BI79 AC161052.2-201ENSMUST00000220969 1375 ntTSL 5 BASIC19.49■□□□□ 0.71
Ccdc40Q8BI79 Fam118a-201ENSMUST00000023069 2543 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Ccdc40Q8BI79 Kctd17-201ENSMUST00000089414 1180 ntAPPRIS ALT2 TSL 5 BASIC19.49■□□□□ 0.71
Ccdc40Q8BI79 Lrrc47-201ENSMUST00000030894 3395 ntAPPRIS P2 TSL 1 (best) BASIC19.49■□□□□ 0.71
Ccdc40Q8BI79 Apoe-206ENSMUST00000174064 1408 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Ccdc40Q8BI79 Pllp-201ENSMUST00000034227 1926 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Ccdc40Q8BI79 Dnlz-201ENSMUST00000028295 2916 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Ccdc40Q8BI79 Lifr-202ENSMUST00000164529 2844 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
Ccdc40Q8BI79 Klhdc3-202ENSMUST00000165007 1973 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Ccdc40Q8BI79 Podxl-201ENSMUST00000026698 5379 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Ccdc40Q8BI79 Cacul1-202ENSMUST00000111460 5561 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
Ccdc40Q8BI79 Memo1-201ENSMUST00000078459 1513 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Ccdc40Q8BI79 Eml4-203ENSMUST00000112363 5238 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
Ccdc40Q8BI79 Capn10-202ENSMUST00000117814 1268 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
Ccdc40Q8BI79 Ankrd9-205ENSMUST00000142012 1226 ntAPPRIS ALT2 TSL 5 BASIC19.48■□□□□ 0.71
Ccdc40Q8BI79 Gm40848-201ENSMUST00000221998 324 ntBASIC19.48■□□□□ 0.71
Ccdc40Q8BI79 AC164441.1-202ENSMUST00000223430 442 ntTSL 2 BASIC19.48■□□□□ 0.71
Ccdc40Q8BI79 Igfbp6-201ENSMUST00000023807 1112 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Ccdc40Q8BI79 Nat14-204ENSMUST00000207687 1415 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Ccdc40Q8BI79 Wdsub1-201ENSMUST00000028368 2072 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Ccdc40Q8BI79 Slc39a10-201ENSMUST00000027131 5498 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Ccdc40Q8BI79 A130048G24Rik-201ENSMUST00000193052 2750 ntBASIC19.48■□□□□ 0.71
Ccdc40Q8BI79 Matk-204ENSMUST00000120265 1618 ntAPPRIS ALT2 TSL 5 BASIC19.47■□□□□ 0.71
Ccdc40Q8BI79 Ppfia1-201ENSMUST00000168134 5181 ntAPPRIS P3 TSL 1 (best) BASIC19.47■□□□□ 0.71
Ccdc40Q8BI79 Etnk1-203ENSMUST00000204947 1791 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
Ccdc40Q8BI79 Gm45015-201ENSMUST00000207943 1364 ntAPPRIS P1 TSL 5 BASIC19.47■□□□□ 0.71
Ccdc40Q8BI79 Slc25a4-201ENSMUST00000034049 1925 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Ccdc40Q8BI79 Sra1-201ENSMUST00000001415 2061 ntAPPRIS P4 TSL 5 BASIC19.47■□□□□ 0.71
Ccdc40Q8BI79 Mplkip-201ENSMUST00000049744 2672 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Ccdc40Q8BI79 Gas5-217ENSMUST00000161005 430 ntTSL 5 BASIC19.47■□□□□ 0.71
Ccdc40Q8BI79 Cdc34b-202ENSMUST00000188741 1252 ntBASIC19.47■□□□□ 0.71
Ccdc40Q8BI79 Cdc34-201ENSMUST00000020550 1266 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Ccdc40Q8BI79 Cdc34b-201ENSMUST00000021240 1233 ntAPPRIS P1 BASIC19.47■□□□□ 0.71
Ccdc40Q8BI79 AC114678.1-201ENSMUST00000219640 622 ntTSL 3 BASIC19.47■□□□□ 0.71
Ccdc40Q8BI79 Spaca1-201ENSMUST00000029927 1197 ntAPPRIS P3 TSL 1 (best) BASIC19.47■□□□□ 0.71
Ccdc40Q8BI79 Spaca1-202ENSMUST00000084734 1149 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
Ccdc40Q8BI79 Nol9-202ENSMUST00000103197 2271 ntAPPRIS P3 TSL 1 (best) BASIC19.47■□□□□ 0.71
Ccdc40Q8BI79 Eif4h-205ENSMUST00000202622 2726 ntAPPRIS P3 TSL 1 (best) BASIC19.47■□□□□ 0.71
Ccdc40Q8BI79 1810055G02Rik-201ENSMUST00000039048 1882 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Ccdc40Q8BI79 Rnf44-204ENSMUST00000125871 4292 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Ccdc40Q8BI79 Rnf146-203ENSMUST00000160372 1948 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Ccdc40Q8BI79 Sncaip-205ENSMUST00000178011 3433 ntAPPRIS P3 TSL 1 (best) BASIC19.47■□□□□ 0.71
Ccdc40Q8BI79 Cstf2-202ENSMUST00000113286 2717 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
Ccdc40Q8BI79 Vav2-201ENSMUST00000056176 5221 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Ccdc40Q8BI79 Cacnb3-201ENSMUST00000003442 2819 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Ccdc40Q8BI79 D16Ertd472e-202ENSMUST00000114219 1576 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Ccdc40Q8BI79 Ankrd17-214ENSMUST00000218526 4938 ntTSL 5 BASIC19.46■□□□□ 0.71
Ccdc40Q8BI79 Cyp4f16-201ENSMUST00000003416 2227 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Ccdc40Q8BI79 AV026068-208ENSMUST00000189098 286 ntTSL 5 BASIC19.46■□□□□ 0.71
Ccdc40Q8BI79 Cisd1-201ENSMUST00000045887 1084 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Ccdc40Q8BI79 Chtf8-201ENSMUST00000169312 2730 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
Ccdc40Q8BI79 Gls-204ENSMUST00000114513 4966 ntAPPRIS P3 TSL 5 BASIC19.46■□□□□ 0.71
Ccdc40Q8BI79 Ulk2-201ENSMUST00000004920 5743 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Ccdc40Q8BI79 Hmgxb3-201ENSMUST00000091884 5101 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Ccdc40Q8BI79 Arpc2-202ENSMUST00000113819 1313 ntTSL 5 BASIC19.46■□□□□ 0.71
Ccdc40Q8BI79 Gm11762-201ENSMUST00000135630 1705 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
Ccdc40Q8BI79 Kmt5b-216ENSMUST00000176926 1551 ntAPPRIS ALT2 TSL 5 BASIC19.45■□□□□ 0.7
Ccdc40Q8BI79 Prss12-201ENSMUST00000029603 2602 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Ccdc40Q8BI79 Mrgbp-206ENSMUST00000169630 1192 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Ccdc40Q8BI79 Kiss1-204ENSMUST00000194044 583 ntAPPRIS P1 TSL 2 BASIC19.45■□□□□ 0.7
Ccdc40Q8BI79 Zfp428-201ENSMUST00000071361 1182 ntAPPRIS P3 TSL 1 (best) BASIC19.45■□□□□ 0.7
Ccdc40Q8BI79 Snx21-201ENSMUST00000056181 2590 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Ccdc40Q8BI79 Aen-202ENSMUST00000107423 2230 ntAPPRIS P3 TSL 5 BASIC19.45■□□□□ 0.7
Ccdc40Q8BI79 2310034G01Rik-201ENSMUST00000189008 1373 ntAPPRIS P1 TSL 5 BASIC19.44■□□□□ 0.7
Ccdc40Q8BI79 Tacc3-203ENSMUST00000114426 2187 ntAPPRIS P3 TSL 1 (best) BASIC19.44■□□□□ 0.7
Ccdc40Q8BI79 Sept9-201ENSMUST00000019038 3784 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
Ccdc40Q8BI79 Olfm2-204ENSMUST00000217198 2005 ntAPPRIS ALT2 TSL 3 BASIC19.44■□□□□ 0.7
Ccdc40Q8BI79 Slc11a1-211ENSMUST00000187516 1893 ntAPPRIS ALT2 TSL 5 BASIC19.44■□□□□ 0.7
Ccdc40Q8BI79 Camsap3-207ENSMUST00000207712 2539 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
Retrieved 100 of 76,532 protein–RNA pairs in 20.8 ms