Protein–RNA interactions for Protein: Q6PDX6

Rnf220, E3 ubiquitin-protein ligase Rnf220, mousemouse

Predictions only

Length 566 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rnf220Q6PDX6 Foxp4-204ENSMUST00000113265 3999 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
Rnf220Q6PDX6 Ostm1-201ENSMUST00000040718 3006 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Rnf220Q6PDX6 Stoml2-201ENSMUST00000030169 1874 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Rnf220Q6PDX6 AA543186-201ENSMUST00000180841 1696 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
Rnf220Q6PDX6 C230012O17Rik-201ENSMUST00000130085 2999 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
Rnf220Q6PDX6 Uckl1os-201ENSMUST00000122831 2018 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
Rnf220Q6PDX6 Zfp346-202ENSMUST00000159147 1146 ntTSL 5 BASIC17.78■□□□□ 0.44
Rnf220Q6PDX6 Ppp1r35-201ENSMUST00000031739 956 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Rnf220Q6PDX6 Rabac1-201ENSMUST00000076961 899 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Rnf220Q6PDX6 Ache-202ENSMUST00000085934 2176 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Rnf220Q6PDX6 Cspg5-202ENSMUST00000196060 3790 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
Rnf220Q6PDX6 Ets1-201ENSMUST00000034534 5080 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Rnf220Q6PDX6 Gm9885-202ENSMUST00000186234 2209 ntBASIC17.78■□□□□ 0.44
Rnf220Q6PDX6 Gata6-201ENSMUST00000047762 3194 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Rnf220Q6PDX6 Ahcyl2-204ENSMUST00000115242 5152 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.44
Rnf220Q6PDX6 Tpst2-201ENSMUST00000031287 1835 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Rnf220Q6PDX6 Vamp4-204ENSMUST00000135241 1461 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Rnf220Q6PDX6 Nudt10-201ENSMUST00000103006 1775 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Rnf220Q6PDX6 Nkiras2-201ENSMUST00000017981 2097 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Rnf220Q6PDX6 Txnrd2-201ENSMUST00000115604 1235 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
Rnf220Q6PDX6 Fam98c-209ENSMUST00000164589 1293 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.44
Rnf220Q6PDX6 A930002H24Rik-201ENSMUST00000050753 492 ntAPPRIS P1 BASIC17.77■□□□□ 0.44
Rnf220Q6PDX6 Pbx1-201ENSMUST00000064438 1020 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
Rnf220Q6PDX6 Cep83-201ENSMUST00000020212 3639 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Rnf220Q6PDX6 Pcf11-201ENSMUST00000119954 5995 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Rnf220Q6PDX6 Gm18688-201ENSMUST00000204695 1859 ntBASIC17.77■□□□□ 0.43
Rnf220Q6PDX6 R3hdm4-201ENSMUST00000045628 1898 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
Rnf220Q6PDX6 Acot1-201ENSMUST00000168120 2272 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
Rnf220Q6PDX6 Slain2-202ENSMUST00000144843 4833 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
Rnf220Q6PDX6 Ltbp4-205ENSMUST00000121175 5118 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.43
Rnf220Q6PDX6 Tmem79-203ENSMUST00000107553 2053 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Rnf220Q6PDX6 Sh3bp1-202ENSMUST00000061239 1917 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
Rnf220Q6PDX6 Rbm12b1-202ENSMUST00000069128 3069 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Rnf220Q6PDX6 Msi2-201ENSMUST00000092794 1855 ntAPPRIS P2 TSL 1 (best) BASIC17.76■□□□□ 0.43
Rnf220Q6PDX6 Dusp4-201ENSMUST00000033930 2740 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Rnf220Q6PDX6 9330111N05Rik-202ENSMUST00000181043 2449 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
Rnf220Q6PDX6 Pdgfa-204ENSMUST00000110897 1287 ntAPPRIS P1 TSL 5 BASIC17.76■□□□□ 0.43
Rnf220Q6PDX6 Nnat-207ENSMUST00000173041 760 ntTSL 5 BASIC17.76■□□□□ 0.43
Rnf220Q6PDX6 Ltb-203ENSMUST00000173600 905 ntAPPRIS ALT2 TSL 5 BASIC17.76■□□□□ 0.43
Rnf220Q6PDX6 Tmem127-202ENSMUST00000174288 842 ntTSL 2 BASIC17.76■□□□□ 0.43
Rnf220Q6PDX6 Aldoa-ps3-201ENSMUST00000217558 306 ntBASIC17.76■□□□□ 0.43
Rnf220Q6PDX6 Foxj3-206ENSMUST00000138845 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
Rnf220Q6PDX6 Nadk2-202ENSMUST00000100789 3578 ntAPPRIS ALT2 TSL 5 BASIC17.76■□□□□ 0.43
Rnf220Q6PDX6 Vsig10l-204ENSMUST00000203769 2473 ntAPPRIS P2 TSL 1 (best) BASIC17.76■□□□□ 0.43
Rnf220Q6PDX6 Barx1-201ENSMUST00000021813 1399 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Rnf220Q6PDX6 Irak1bp1-202ENSMUST00000113245 2158 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Rnf220Q6PDX6 Slc35f2-201ENSMUST00000048670 2558 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Rnf220Q6PDX6 Fam46c-201ENSMUST00000061455 5640 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Rnf220Q6PDX6 A930012L18Rik-201ENSMUST00000181094 2364 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
Rnf220Q6PDX6 Ispd-207ENSMUST00000223205 2361 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
Rnf220Q6PDX6 Stn1-201ENSMUST00000049369 1992 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Rnf220Q6PDX6 AC166356.1-201ENSMUST00000228236 1426 ntBASIC17.75■□□□□ 0.43
Rnf220Q6PDX6 Fzr1-205ENSMUST00000140901 3057 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Rnf220Q6PDX6 Nsmf-213ENSMUST00000140737 862 ntTSL 5 BASIC17.75■□□□□ 0.43
Rnf220Q6PDX6 Letm2-209ENSMUST00000210810 1538 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
Rnf220Q6PDX6 Arhgef7-205ENSMUST00000110909 4926 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
Rnf220Q6PDX6 Htr6-201ENSMUST00000068036 1362 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Rnf220Q6PDX6 Fam172a-202ENSMUST00000099358 2242 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
Rnf220Q6PDX6 Mapre3-202ENSMUST00000200692 1816 ntTSL 5 BASIC17.75■□□□□ 0.43
Rnf220Q6PDX6 Cacul1-201ENSMUST00000081790 5790 ntAPPRIS P3 TSL 1 (best) BASIC17.74■□□□□ 0.43
Rnf220Q6PDX6 Mon1a-201ENSMUST00000035202 2042 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Rnf220Q6PDX6 Hopx-203ENSMUST00000120827 1217 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Rnf220Q6PDX6 Gpx7-202ENSMUST00000184609 331 ntTSL 3 BASIC17.74■□□□□ 0.43
Rnf220Q6PDX6 Tbc1d2b-202ENSMUST00000128874 3473 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
Rnf220Q6PDX6 Klc3-203ENSMUST00000108458 1823 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
Rnf220Q6PDX6 Dedd2-201ENSMUST00000058702 1828 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Rnf220Q6PDX6 Clasp2-204ENSMUST00000213663 2727 ntTSL 5 BASIC17.74■□□□□ 0.43
Rnf220Q6PDX6 Bcas2-201ENSMUST00000005830 1467 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Rnf220Q6PDX6 Nrxn1-217ENSMUST00000174337 3021 ntTSL 5 BASIC17.74■□□□□ 0.43
Rnf220Q6PDX6 Pou2f2-201ENSMUST00000098679 2340 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
Rnf220Q6PDX6 Slc25a47-202ENSMUST00000221080 1890 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
Rnf220Q6PDX6 Gm16754-201ENSMUST00000181222 2077 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
Rnf220Q6PDX6 Gm37352-201ENSMUST00000193908 2181 ntBASIC17.73■□□□□ 0.43
Rnf220Q6PDX6 Nptx1-201ENSMUST00000026670 5217 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Rnf220Q6PDX6 Il6st-208ENSMUST00000184311 2985 ntAPPRIS P2 TSL 5 BASIC17.73■□□□□ 0.43
Rnf220Q6PDX6 Gm18755-201ENSMUST00000218030 1099 ntBASIC17.73■□□□□ 0.43
Rnf220Q6PDX6 Lemd3-201ENSMUST00000119093 4370 ntAPPRIS ALT2 TSL 2 BASIC17.73■□□□□ 0.43
Rnf220Q6PDX6 Rab6a-202ENSMUST00000098252 3110 ntAPPRIS ALT1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Rnf220Q6PDX6 Tsnax-202ENSMUST00000212603 2169 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
Rnf220Q6PDX6 Uso1-204ENSMUST00000202155 3707 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
Rnf220Q6PDX6 Slc47a2-201ENSMUST00000093029 2377 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Rnf220Q6PDX6 Tmem136-202ENSMUST00000213544 2463 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Rnf220Q6PDX6 Camkk2-211ENSMUST00000200109 2751 ntAPPRIS P3 TSL 1 (best) BASIC17.73■□□□□ 0.43
Rnf220Q6PDX6 Ppm1b-202ENSMUST00000112304 3262 ntAPPRIS P3 TSL 1 (best) BASIC17.73■□□□□ 0.43
Rnf220Q6PDX6 Slc36a4-202ENSMUST00000115588 1745 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
Rnf220Q6PDX6 Antxr1-201ENSMUST00000042025 5253 ntAPPRIS P2 TSL 1 (best) BASIC17.72■□□□□ 0.43
Rnf220Q6PDX6 Gabarapl1-201ENSMUST00000032264 1820 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Rnf220Q6PDX6 Shisa5-202ENSMUST00000112059 1910 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
Rnf220Q6PDX6 AC123834.2-201ENSMUST00000224038 2340 ntBASIC17.72■□□□□ 0.43
Rnf220Q6PDX6 Dscr3-201ENSMUST00000023615 2547 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Rnf220Q6PDX6 Ppm1d-201ENSMUST00000020835 2899 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Rnf220Q6PDX6 Rbfox3-202ENSMUST00000069343 1553 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
Rnf220Q6PDX6 Lrrc58-201ENSMUST00000078717 8604 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Rnf220Q6PDX6 Snrnp70-201ENSMUST00000074575 1735 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Rnf220Q6PDX6 Cep68-204ENSMUST00000162811 2788 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
Rnf220Q6PDX6 Nrxn2-202ENSMUST00000113458 3503 ntTSL 5 BASIC17.72■□□□□ 0.43
Rnf220Q6PDX6 Timm8a1-201ENSMUST00000054213 1421 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Rnf220Q6PDX6 Eml1-203ENSMUST00000109860 4160 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Rnf220Q6PDX6 Tsen34-202ENSMUST00000108627 1319 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
Rnf220Q6PDX6 Nsmf-202ENSMUST00000074422 2824 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
Retrieved 100 of 76,532 protein–RNA pairs in 50.1 ms