Protein–RNA interactions for Protein: Q62233

Six3, Homeobox protein SIX3, mousemouse

Predictions only

Length 333 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Six3Q62233 Gm6899-201ENSMUST00000089614 622 ntAPPRIS P1 BASIC18.37■□□□□ 0.53
Six3Q62233 Gm5577-201ENSMUST00000134600 1434 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
Six3Q62233 Smap2-201ENSMUST00000043200 2905 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Six3Q62233 Kcns3-201ENSMUST00000055673 2933 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Six3Q62233 Vapa-201ENSMUST00000024897 1640 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Six3Q62233 Ica1-203ENSMUST00000115519 1706 ntAPPRIS ALT2 TSL 5 BASIC18.37■□□□□ 0.53
Six3Q62233 Gm15853-202ENSMUST00000195518 2041 ntBASIC18.37■□□□□ 0.53
Six3Q62233 Bcl11b-203ENSMUST00000109891 2888 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
Six3Q62233 Dtx4-201ENSMUST00000045521 5765 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Six3Q62233 Pafah1b1-201ENSMUST00000021091 5803 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Six3Q62233 Zfp444-203ENSMUST00000108566 1648 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Six3Q62233 Nabp2-202ENSMUST00000164199 1371 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Six3Q62233 B930094E09Rik-201ENSMUST00000164667 1240 ntAPPRIS P1 BASIC18.36■□□□□ 0.53
Six3Q62233 Bend3-202ENSMUST00000167488 6337 ntAPPRIS P1 TSL 2 BASIC18.36■□□□□ 0.53
Six3Q62233 Gm43017-201ENSMUST00000198296 752 ntBASIC18.36■□□□□ 0.53
Six3Q62233 AC161052.2-201ENSMUST00000220969 1375 ntTSL 5 BASIC18.36■□□□□ 0.53
Six3Q62233 Igfbp6-201ENSMUST00000023807 1112 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Six3Q62233 Slc10a4-201ENSMUST00000031127 2106 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Six3Q62233 Lbx2-201ENSMUST00000041265 817 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Six3Q62233 Miga1-201ENSMUST00000068243 2689 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
Six3Q62233 Slc35d2-201ENSMUST00000099441 2303 ntAPPRIS P2 TSL 1 (best) BASIC18.36■□□□□ 0.53
Six3Q62233 Slc30a4-202ENSMUST00000099457 3170 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
Six3Q62233 Ism1-202ENSMUST00000184404 2964 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Six3Q62233 Socs6-203ENSMUST00000125362 2814 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Six3Q62233 Nudt10-201ENSMUST00000103006 1775 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Six3Q62233 Arx-201ENSMUST00000046565 2881 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Six3Q62233 Cacnb3-201ENSMUST00000003442 2819 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Six3Q62233 Mrgbp-206ENSMUST00000169630 1192 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Six3Q62233 Stum-202ENSMUST00000179826 601 ntAPPRIS ALT1 TSL 5 BASIC18.35■□□□□ 0.53
Six3Q62233 Paics-201ENSMUST00000031160 2482 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Six3Q62233 Gorasp2-202ENSMUST00000112201 2417 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
Six3Q62233 Creld1-201ENSMUST00000032422 2306 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Six3Q62233 Csf1-203ENSMUST00000120243 2097 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
Six3Q62233 Actl6a-201ENSMUST00000029214 2010 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Six3Q62233 Hes3-201ENSMUST00000094438 1829 ntAPPRIS P2 TSL 1 (best) BASIC18.35■□□□□ 0.53
Six3Q62233 Slc35a2-203ENSMUST00000115663 1527 ntAPPRIS P4 TSL 2 BASIC18.34■□□□□ 0.53
Six3Q62233 Polg2-201ENSMUST00000021060 1506 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Six3Q62233 Fgfr1-215ENSMUST00000179592 5041 ntTSL 5 BASIC18.34■□□□□ 0.53
Six3Q62233 Dxo-211ENSMUST00000180043 1447 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
Six3Q62233 Syndig1-202ENSMUST00000109935 2050 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
Six3Q62233 Zfp821-206ENSMUST00000212964 2033 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
Six3Q62233 Nus1-201ENSMUST00000023830 4605 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Six3Q62233 Gas5-217ENSMUST00000161005 430 ntTSL 5 BASIC18.34■□□□□ 0.53
Six3Q62233 Tusc3-202ENSMUST00000169034 1262 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
Six3Q62233 Gm26833-201ENSMUST00000180899 440 ntBASIC18.34■□□□□ 0.53
Six3Q62233 Sdf2l1-201ENSMUST00000023453 1108 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Six3Q62233 Cmc4-201ENSMUST00000033543 992 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Six3Q62233 Cisd1-201ENSMUST00000045887 1084 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Six3Q62233 Bicdl1-203ENSMUST00000118576 1874 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
Six3Q62233 3830408C21Rik-206ENSMUST00000225489 1810 ntBASIC18.34■□□□□ 0.53
Six3Q62233 Larp6-201ENSMUST00000038407 2440 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Six3Q62233 Ube2d2a-201ENSMUST00000167406 2393 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
Six3Q62233 5330438D12Rik-201ENSMUST00000064101 2229 ntBASIC18.34■□□□□ 0.53
Six3Q62233 Paxip1-201ENSMUST00000002291 5850 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Six3Q62233 Ttc19-201ENSMUST00000050646 3410 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.53
Six3Q62233 S1pr4-201ENSMUST00000053646 2386 ntAPPRIS P1 BASIC18.33■□□□□ 0.53
Six3Q62233 Lgmn-202ENSMUST00000110020 1835 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
Six3Q62233 Cdc37l1-205ENSMUST00000224599 1769 ntBASIC18.33■□□□□ 0.53
Six3Q62233 Ebf3-201ENSMUST00000033378 4838 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.53
Six3Q62233 Chrac1-202ENSMUST00000134353 538 ntAPPRIS ALT2 TSL 2 BASIC18.33■□□□□ 0.52
Six3Q62233 Krt4-201ENSMUST00000023797 2132 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Six3Q62233 Rtn4rl2-201ENSMUST00000054514 1263 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Six3Q62233 Mex3b-201ENSMUST00000082237 3355 ntAPPRIS P1 TSL 2 BASIC18.33■□□□□ 0.52
Six3Q62233 Map7d2-203ENSMUST00000112471 3670 ntAPPRIS P3 TSL 5 BASIC18.33■□□□□ 0.52
Six3Q62233 B4gat1-201ENSMUST00000053705 2035 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Six3Q62233 Leng1-201ENSMUST00000019878 2222 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Six3Q62233 Usp21-201ENSMUST00000065941 2219 ntAPPRIS P2 TSL 1 (best) BASIC18.33■□□□□ 0.52
Six3Q62233 Lsp1-202ENSMUST00000038946 1828 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.52
Six3Q62233 Lpcat2-205ENSMUST00000210099 2179 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
Six3Q62233 Cyb5d2-201ENSMUST00000079681 2393 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Six3Q62233 Gpatch2-201ENSMUST00000044812 1639 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
Six3Q62233 Camkk2-202ENSMUST00000196742 1084 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
Six3Q62233 Myadml2-201ENSMUST00000026134 931 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Six3Q62233 Zfp428-201ENSMUST00000071361 1182 ntAPPRIS P3 TSL 1 (best) BASIC18.32■□□□□ 0.52
Six3Q62233 Cep170b-202ENSMUST00000101018 6641 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Six3Q62233 Anapc16-204ENSMUST00000182898 1852 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Six3Q62233 Zfyve9-202ENSMUST00000106657 6459 ntAPPRIS P2 TSL 5 BASIC18.32■□□□□ 0.52
Six3Q62233 Foxf1-201ENSMUST00000181504 2415 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Six3Q62233 Anapc5-203ENSMUST00000196640 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
Six3Q62233 P2ry2-204ENSMUST00000207916 2372 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Six3Q62233 Dmtn-210ENSMUST00000228824 2377 ntBASIC18.32■□□□□ 0.52
Six3Q62233 Nkiras2-203ENSMUST00000107376 1727 ntAPPRIS P1 TSL 5 BASIC18.32■□□□□ 0.52
Six3Q62233 Cacul1-203ENSMUST00000166712 5700 ntAPPRIS ALT2 TSL 5 BASIC18.32■□□□□ 0.52
Six3Q62233 Wbp1-201ENSMUST00000032111 1419 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
Six3Q62233 Nsmf-204ENSMUST00000102931 2830 ntTSL 5 BASIC18.31■□□□□ 0.52
Six3Q62233 Dtwd2-201ENSMUST00000025383 2476 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Six3Q62233 Ttyh3-201ENSMUST00000042661 4658 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Six3Q62233 Maneal-201ENSMUST00000064444 2727 ntAPPRIS P1 TSL 3 BASIC18.31■□□□□ 0.52
Six3Q62233 Pparg-202ENSMUST00000171644 2125 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Six3Q62233 Ccdc85c-201ENSMUST00000136175 1302 ntAPPRIS ALT2 TSL 5 BASIC18.31■□□□□ 0.52
Six3Q62233 Rpusd3-204ENSMUST00000129047 1045 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
Six3Q62233 Thap8-201ENSMUST00000014072 1182 ntAPPRIS ALT2 TSL 5 BASIC18.31■□□□□ 0.52
Six3Q62233 AV026068-208ENSMUST00000189098 286 ntTSL 5 BASIC18.31■□□□□ 0.52
Six3Q62233 Gpx1-202ENSMUST00000191997 787 ntTSL 2 BASIC18.31■□□□□ 0.52
Six3Q62233 Bri3-201ENSMUST00000056578 955 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Six3Q62233 Rpusd3-201ENSMUST00000060634 1224 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
Six3Q62233 Gpx1-201ENSMUST00000082429 1072 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Six3Q62233 Wnk2-210ENSMUST00000162403 6147 ntAPPRIS ALT2 TSL 5 BASIC18.31■□□□□ 0.52
Six3Q62233 4930452B06Rik-201ENSMUST00000102996 2681 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Six3Q62233 Sec61a2-202ENSMUST00000102981 2448 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Retrieved 100 of 76,532 protein–RNA pairs in 25.7 ms