Protein–RNA interactions for Protein: Q61245

Col11a1, Collagen alpha-1(XI) chain, mousemouse

Predictions only

Length 1,804 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col11a1Q61245 Alad-202ENSMUST00000107444 1247 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
Col11a1Q61245 Mrps10-204ENSMUST00000120737 1017 ntAPPRIS ALT1 TSL 1 (best) BASIC21.43■■□□□ 1.02
Col11a1Q61245 Qdpr-208ENSMUST00000197946 1206 ntTSL 5 BASIC21.43■■□□□ 1.02
Col11a1Q61245 Gm32151-201ENSMUST00000223521 915 ntTSL 5 BASIC21.43■■□□□ 1.02
Col11a1Q61245 Mpp6-201ENSMUST00000036225 1896 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
Col11a1Q61245 Zfp653-201ENSMUST00000043922 2108 ntAPPRIS P3 TSL 1 (best) BASIC21.42■■□□□ 1.02
Col11a1Q61245 Rrp9-201ENSMUST00000047721 1586 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
Col11a1Q61245 Nrarp-201ENSMUST00000104999 2582 ntAPPRIS P1 BASIC21.42■■□□□ 1.02
Col11a1Q61245 Matk-204ENSMUST00000120265 1618 ntAPPRIS ALT2 TSL 5 BASIC21.42■■□□□ 1.02
Col11a1Q61245 Carm1-203ENSMUST00000115395 3152 ntAPPRIS ALT2 TSL 1 (best) BASIC21.42■■□□□ 1.02
Col11a1Q61245 Snrnp35-202ENSMUST00000111453 1181 ntAPPRIS P1 TSL 2 BASIC21.42■■□□□ 1.02
Col11a1Q61245 D3Ertd751e-205ENSMUST00000120167 773 ntAPPRIS ALT2 TSL 5 BASIC21.42■■□□□ 1.02
Col11a1Q61245 4930579K19Rik-202ENSMUST00000190541 632 ntTSL 2 BASIC21.42■■□□□ 1.02
Col11a1Q61245 A430033K04Rik-204ENSMUST00000200521 1110 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
Col11a1Q61245 A430033K04Rik-201ENSMUST00000032590 1109 ntTSL 5 BASIC21.42■■□□□ 1.02
Col11a1Q61245 Irak1-202ENSMUST00000068286 2537 ntAPPRIS P3 TSL 1 (best) BASIC21.41■■□□□ 1.02
Col11a1Q61245 Mpzl1-202ENSMUST00000111435 2285 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
Col11a1Q61245 Tmem80-202ENSMUST00000126510 959 ntAPPRIS P1 TSL 5 BASIC21.41■■□□□ 1.02
Col11a1Q61245 Ergic3-202ENSMUST00000088650 1349 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
Col11a1Q61245 Gm13830-204ENSMUST00000149609 1851 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
Col11a1Q61245 Esx1-201ENSMUST00000074698 1600 ntAPPRIS P2 TSL 1 (best) BASIC21.41■■□□□ 1.02
Col11a1Q61245 Smox-209ENSMUST00000110189 1919 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
Col11a1Q61245 Ccdc149-202ENSMUST00000198008 2470 ntTSL 5 BASIC21.41■■□□□ 1.02
Col11a1Q61245 Zfp691-202ENSMUST00000106355 1588 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
Col11a1Q61245 Gm6659-201ENSMUST00000174752 547 ntBASIC21.41■■□□□ 1.02
Col11a1Q61245 Gm3375-201ENSMUST00000203929 796 ntBASIC21.41■■□□□ 1.02
Col11a1Q61245 Irf2bp1-201ENSMUST00000053713 2734 ntAPPRIS P1 BASIC21.4■■□□□ 1.02
Col11a1Q61245 Tekt1-203ENSMUST00000108503 1397 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
Col11a1Q61245 Efna4-201ENSMUST00000029674 1599 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
Col11a1Q61245 Ccnd3-201ENSMUST00000037333 1999 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
Col11a1Q61245 Bad-202ENSMUST00000113423 990 ntAPPRIS ALT2 TSL 1 (best) BASIC21.4■■□□□ 1.02
Col11a1Q61245 Naa10-205ENSMUST00000114390 797 ntTSL 5 BASIC21.4■■□□□ 1.02
Col11a1Q61245 Gm11973-203ENSMUST00000155498 867 ntTSL 3 BASIC21.4■■□□□ 1.02
Col11a1Q61245 Npw-201ENSMUST00000095544 638 ntAPPRIS ALT2 TSL 1 (best) BASIC21.4■■□□□ 1.02
Col11a1Q61245 4930461C15Rik-201ENSMUST00000133622 1302 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
Col11a1Q61245 Tspan9-201ENSMUST00000032503 1405 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
Col11a1Q61245 Zfp821-206ENSMUST00000212964 2033 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
Col11a1Q61245 Arpc5-202ENSMUST00000097536 1737 ntTSL 1 (best) BASIC21.39■■□□□ 1.02
Col11a1Q61245 Tpra1-201ENSMUST00000055022 1820 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
Col11a1Q61245 Spry1-203ENSMUST00000108109 2451 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
Col11a1Q61245 Gm10459-201ENSMUST00000202708 1155 ntBASIC21.39■■□□□ 1.02
Col11a1Q61245 Gm30025-201ENSMUST00000218555 728 ntBASIC21.39■■□□□ 1.02
Col11a1Q61245 Fbxo44-201ENSMUST00000057907 1829 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
Col11a1Q61245 Tmem192-201ENSMUST00000026595 1122 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
Col11a1Q61245 Yif1b-201ENSMUST00000032809 1111 ntAPPRIS P3 TSL 1 (best) BASIC21.39■■□□□ 1.01
Col11a1Q61245 Samd8-201ENSMUST00000022292 1574 ntAPPRIS P2 TSL 1 (best) BASIC21.38■■□□□ 1.01
Col11a1Q61245 Cerkl-205ENSMUST00000143974 1623 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
Col11a1Q61245 3110053B16Rik-202ENSMUST00000140360 2004 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
Col11a1Q61245 Nanp-201ENSMUST00000066640 1394 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
Col11a1Q61245 Nfe2-210ENSMUST00000156927 1608 ntAPPRIS P1 TSL 5 BASIC21.37■■□□□ 1.01
Col11a1Q61245 Prdm13-202ENSMUST00000095141 3173 ntAPPRIS P2 TSL 2 BASIC21.37■■□□□ 1.01
Col11a1Q61245 Zar1-201ENSMUST00000073528 1429 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
Col11a1Q61245 Iscu-202ENSMUST00000112311 1395 ntTSL 2 BASIC21.37■■□□□ 1.01
Col11a1Q61245 Nkx2-2-203ENSMUST00000109970 1053 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
Col11a1Q61245 Gm15723-201ENSMUST00000139331 600 ntTSL 3 BASIC21.37■■□□□ 1.01
Col11a1Q61245 Gm21362-201ENSMUST00000194272 928 ntBASIC21.37■■□□□ 1.01
Col11a1Q61245 6430500D05Rik-201ENSMUST00000198286 1176 ntBASIC21.37■■□□□ 1.01
Col11a1Q61245 Lsm1-203ENSMUST00000211168 343 ntTSL 3 BASIC21.37■■□□□ 1.01
Col11a1Q61245 Flot1-201ENSMUST00000001569 1825 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
Col11a1Q61245 Fam60a-202ENSMUST00000081956 2737 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
Col11a1Q61245 Atp5g1-203ENSMUST00000107686 691 ntAPPRIS P1 TSL 3 BASIC21.36■■□□□ 1.01
Col11a1Q61245 Rpl18-ps2-201ENSMUST00000118863 567 ntBASIC21.36■■□□□ 1.01
Col11a1Q61245 Gm11539-201ENSMUST00000119837 557 ntBASIC21.36■■□□□ 1.01
Col11a1Q61245 Gm13436-201ENSMUST00000120418 567 ntBASIC21.36■■□□□ 1.01
Col11a1Q61245 Gm45618-201ENSMUST00000209890 660 ntAPPRIS P1 BASIC21.36■■□□□ 1.01
Col11a1Q61245 Tcerg1l-201ENSMUST00000160436 2565 ntAPPRIS P1 TSL 5 BASIC21.36■■□□□ 1.01
Col11a1Q61245 Fam229a-201ENSMUST00000106043 558 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Col11a1Q61245 Cul4a-202ENSMUST00000121426 1044 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
Col11a1Q61245 Smim14-202ENSMUST00000121661 1056 ntAPPRIS P1 TSL 3 BASIC21.36■■□□□ 1.01
Col11a1Q61245 Cib1-207ENSMUST00000206084 772 ntTSL 3 BASIC21.36■■□□□ 1.01
Col11a1Q61245 Gm16475-201ENSMUST00000207306 512 ntTSL 2 BASIC21.36■■□□□ 1.01
Col11a1Q61245 AC160393.1-201ENSMUST00000218378 1279 ntBASIC21.36■■□□□ 1.01
Col11a1Q61245 Tsr3-201ENSMUST00000063574 1192 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Col11a1Q61245 Cib1-202ENSMUST00000071457 702 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
Col11a1Q61245 Rhou-201ENSMUST00000045487 3371 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Col11a1Q61245 Ptpn12-201ENSMUST00000030556 3280 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Col11a1Q61245 Cotl1-201ENSMUST00000034285 1596 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Col11a1Q61245 Faap24-201ENSMUST00000032704 1857 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
Col11a1Q61245 Kctd20-204ENSMUST00000122163 2423 ntAPPRIS P1 TSL 5 BASIC21.35■■□□□ 1.01
Col11a1Q61245 Slc2a8-204ENSMUST00000153484 1168 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
Col11a1Q61245 Gm18025-201ENSMUST00000221733 862 ntBASIC21.35■■□□□ 1.01
Col11a1Q61245 Bax-201ENSMUST00000033093 867 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
Col11a1Q61245 Gm16386-201ENSMUST00000181397 1423 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
Col11a1Q61245 Galk1-201ENSMUST00000021114 1406 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
Col11a1Q61245 Dnajc19-204ENSMUST00000120805 551 ntTSL 2 BASIC21.34■■□□□ 1.01
Col11a1Q61245 1810012K08Rik-201ENSMUST00000155199 574 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
Col11a1Q61245 Fgf8-201ENSMUST00000026240 1117 ntAPPRIS P4 TSL 1 (best) BASIC21.34■■□□□ 1.01
Col11a1Q61245 Cldn24-201ENSMUST00000079639 663 ntAPPRIS P1 BASIC21.34■■□□□ 1.01
Col11a1Q61245 Stoml1-201ENSMUST00000034883 1984 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
Col11a1Q61245 Hfe2-201ENSMUST00000049208 2028 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
Col11a1Q61245 Polr2m-201ENSMUST00000034720 2200 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
Col11a1Q61245 Dbndd2-201ENSMUST00000017878 1338 ntAPPRIS P1 TSL 2 BASIC21.34■■□□□ 1.01
Col11a1Q61245 Ppp3ca-201ENSMUST00000056758 2194 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
Col11a1Q61245 Gm13559-201ENSMUST00000120476 863 ntBASIC21.34■■□□□ 1.01
Col11a1Q61245 Sct-202ENSMUST00000167790 507 ntAPPRIS P3 TSL 1 (best) BASIC21.34■■□□□ 1.01
Col11a1Q61245 Sct-201ENSMUST00000046156 534 ntAPPRIS ALT2 TSL 1 (best) BASIC21.34■■□□□ 1.01
Col11a1Q61245 Rpl21-202ENSMUST00000075453 899 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
Col11a1Q61245 Acot7-201ENSMUST00000030779 1425 ntAPPRIS ALT2 TSL 1 (best) BASIC21.33■■□□□ 1.01
Col11a1Q61245 Pgbd5-204ENSMUST00000140012 3222 ntAPPRIS ALT2 TSL 5 BASIC21.33■■□□□ 1.01
Col11a1Q61245 Guca1b-202ENSMUST00000145462 1556 ntTSL 2 BASIC21.33■■□□□ 1.01
Retrieved 100 of 76,532 protein–RNA pairs in 22.2 ms