Protein–RNA interactions for Protein: Q3U319

Rnf40, E3 ubiquitin-protein ligase BRE1B, mousemouse

Predictions only

Length 1,001 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rnf40Q3U319 Fam92a-208ENSMUST00000177837 1325 ntAPPRIS ALT2 TSL 5 BASIC19.5■□□□□ 0.71
Rnf40Q3U319 Arhgef19-201ENSMUST00000006618 3414 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Rnf40Q3U319 Gm43213-201ENSMUST00000151866 1790 ntBASIC19.49■□□□□ 0.71
Rnf40Q3U319 Mon2-202ENSMUST00000073792 9301 ntAPPRIS ALT2 TSL 5 BASIC19.49■□□□□ 0.71
Rnf40Q3U319 Fem1c-201ENSMUST00000036226 5726 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Rnf40Q3U319 Pdzd8-201ENSMUST00000099274 7076 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Rnf40Q3U319 Tagln-201ENSMUST00000034590 1595 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Rnf40Q3U319 Gm26694-201ENSMUST00000180868 1902 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
Rnf40Q3U319 Acot1-201ENSMUST00000168120 2272 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Rnf40Q3U319 Gp5-201ENSMUST00000061190 2196 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Rnf40Q3U319 Dexi-203ENSMUST00000184863 2537 ntAPPRIS P1 TSL 2 BASIC19.49■□□□□ 0.71
Rnf40Q3U319 Fam168b-204ENSMUST00000170092 941 ntTSL 5 BASIC19.49■□□□□ 0.71
Rnf40Q3U319 Prrt2-206ENSMUST00000202045 429 ntTSL 5 BASIC19.49■□□□□ 0.71
Rnf40Q3U319 Gm32699-201ENSMUST00000221728 1988 ntBASIC19.49■□□□□ 0.71
Rnf40Q3U319 Eif4g3-201ENSMUST00000058133 2663 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
Rnf40Q3U319 Acvr1b-201ENSMUST00000000544 4413 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Rnf40Q3U319 Ldlrad4-201ENSMUST00000063775 2493 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Rnf40Q3U319 Cdkn2d-203ENSMUST00000215619 1423 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Rnf40Q3U319 Art1-201ENSMUST00000033300 1425 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Rnf40Q3U319 Abr-202ENSMUST00000072740 5394 ntAPPRIS P1 TSL 5 BASIC19.49■□□□□ 0.71
Rnf40Q3U319 Derl2-207ENSMUST00000171041 1466 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
Rnf40Q3U319 Ica1-203ENSMUST00000115519 1706 ntAPPRIS ALT2 TSL 5 BASIC19.48■□□□□ 0.71
Rnf40Q3U319 Asap2-204ENSMUST00000101562 5552 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
Rnf40Q3U319 Chpt1-201ENSMUST00000020253 3898 ntAPPRIS P3 TSL 1 (best) BASIC19.48■□□□□ 0.71
Rnf40Q3U319 Yipf2-202ENSMUST00000078572 1894 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Rnf40Q3U319 AC125444.1-201ENSMUST00000223536 639 ntAPPRIS P1 BASIC19.48■□□□□ 0.71
Rnf40Q3U319 Mrpl23-201ENSMUST00000038675 692 ntAPPRIS P2 TSL 1 (best) BASIC19.48■□□□□ 0.71
Rnf40Q3U319 Cyp4f15-204ENSMUST00000168171 2168 ntAPPRIS P3 TSL 1 (best) BASIC19.48■□□□□ 0.71
Rnf40Q3U319 Zbtb24-201ENSMUST00000080771 2844 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Rnf40Q3U319 Fndc4-202ENSMUST00000172435 2333 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Rnf40Q3U319 Sec1-201ENSMUST00000040636 2470 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Rnf40Q3U319 Smad5-203ENSMUST00000109876 4570 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Rnf40Q3U319 Ntn5-201ENSMUST00000107742 1574 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
Rnf40Q3U319 Tial1-209ENSMUST00000141126 1344 ntTSL 5 BASIC19.48■□□□□ 0.71
Rnf40Q3U319 Cckbr-202ENSMUST00000181339 1326 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
Rnf40Q3U319 Smad1-202ENSMUST00000066091 3099 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Rnf40Q3U319 Ispd-201ENSMUST00000062041 2690 ntAPPRIS P2 TSL 1 (best) BASIC19.48■□□□□ 0.71
Rnf40Q3U319 Prkaca-201ENSMUST00000005606 2276 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Rnf40Q3U319 Fcmr-201ENSMUST00000038829 1600 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Rnf40Q3U319 AC122335.2-201ENSMUST00000213901 6181 ntBASIC19.47■□□□□ 0.71
Rnf40Q3U319 Acss2-201ENSMUST00000029135 2931 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Rnf40Q3U319 Gnao1-201ENSMUST00000034198 2948 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Rnf40Q3U319 Cep83-201ENSMUST00000020212 3639 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Rnf40Q3U319 Zbtb7a-201ENSMUST00000048128 5938 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Rnf40Q3U319 Tcea2-201ENSMUST00000103042 1183 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Rnf40Q3U319 Slc30a2-203ENSMUST00000105873 1224 ntTSL 5 BASIC19.47■□□□□ 0.71
Rnf40Q3U319 Atf5-202ENSMUST00000107893 1735 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Rnf40Q3U319 Fez2-201ENSMUST00000070039 1939 ntAPPRIS P3 TSL 1 (best) BASIC19.47■□□□□ 0.71
Rnf40Q3U319 Rtkn-203ENSMUST00000121093 2597 ntAPPRIS P3 TSL 1 (best) BASIC19.46■□□□□ 0.71
Rnf40Q3U319 Nol7-201ENSMUST00000071926 1800 ntAPPRIS P2 TSL 1 (best) BASIC19.46■□□□□ 0.71
Rnf40Q3U319 Lpgat1-202ENSMUST00000110856 2792 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
Rnf40Q3U319 Crlf3-201ENSMUST00000061283 2396 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Rnf40Q3U319 Zfand2b-204ENSMUST00000160439 1206 ntAPPRIS P1 TSL 5 BASIC19.46■□□□□ 0.71
Rnf40Q3U319 Polr1d-201ENSMUST00000050970 1196 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Rnf40Q3U319 Crocc-201ENSMUST00000040222 6248 ntTSL 5 BASIC19.46■□□□□ 0.71
Rnf40Q3U319 Gm7856-201ENSMUST00000117514 1493 ntBASIC19.46■□□□□ 0.71
Rnf40Q3U319 Tmem55b-209ENSMUST00000162957 1465 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
Rnf40Q3U319 Tpra1-201ENSMUST00000055022 1820 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Rnf40Q3U319 Naif1-201ENSMUST00000048431 4650 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Rnf40Q3U319 Rcbtb2-226ENSMUST00000171767 2692 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
Rnf40Q3U319 Fam20c-201ENSMUST00000026972 3582 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Rnf40Q3U319 Smad7-201ENSMUST00000026999 4278 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Rnf40Q3U319 Nfix-204ENSMUST00000109764 5476 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
Rnf40Q3U319 9030624G23Rik-201ENSMUST00000101538 2245 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Rnf40Q3U319 Rrad-201ENSMUST00000034351 1577 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Rnf40Q3U319 Prmt6-201ENSMUST00000106567 2450 ntAPPRIS P1 BASIC19.45■□□□□ 0.7
Rnf40Q3U319 Becn1-216ENSMUST00000170502 725 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
Rnf40Q3U319 Fkbp1a-201ENSMUST00000044011 1658 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Rnf40Q3U319 Kank3-201ENSMUST00000048560 2641 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Rnf40Q3U319 Sh3gl2-203ENSMUST00000107188 2286 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
Rnf40Q3U319 Whrn-206ENSMUST00000102867 4013 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
Rnf40Q3U319 Krt4-201ENSMUST00000023797 2132 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Rnf40Q3U319 Pacsin3-203ENSMUST00000111349 1993 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Rnf40Q3U319 March8-202ENSMUST00000101032 4611 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Rnf40Q3U319 Hhat-203ENSMUST00000128619 1819 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
Rnf40Q3U319 Gm5828-201ENSMUST00000071842 1860 ntBASIC19.44■□□□□ 0.7
Rnf40Q3U319 Siva1-201ENSMUST00000021728 924 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Rnf40Q3U319 Lhx6-203ENSMUST00000112963 3481 ntTSL 2 BASIC19.44■□□□□ 0.7
Rnf40Q3U319 Gm6598-201ENSMUST00000202719 2615 ntBASIC19.44■□□□□ 0.7
Rnf40Q3U319 Stox1-202ENSMUST00000133371 3510 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Rnf40Q3U319 Asnsd1-201ENSMUST00000027264 2442 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Rnf40Q3U319 Gm45713-201ENSMUST00000209467 1477 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Rnf40Q3U319 Zrsr2-202ENSMUST00000112289 2735 ntAPPRIS P1 TSL 2 BASIC19.43■□□□□ 0.7
Rnf40Q3U319 Gm15635-204ENSMUST00000208024 2539 ntBASIC19.43■□□□□ 0.7
Rnf40Q3U319 Slc35a2-203ENSMUST00000115663 1527 ntAPPRIS P4 TSL 2 BASIC19.43■□□□□ 0.7
Rnf40Q3U319 A930012O16Rik-202ENSMUST00000156418 1541 ntTSL 2 BASIC19.43■□□□□ 0.7
Rnf40Q3U319 Gm28529-202ENSMUST00000189675 670 ntTSL 2 BASIC19.43■□□□□ 0.7
Rnf40Q3U319 Ildr2-202ENSMUST00000192426 1238 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
Rnf40Q3U319 Sphk1-203ENSMUST00000100201 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
Rnf40Q3U319 AB124611-202ENSMUST00000086361 1310 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
Rnf40Q3U319 Tmem79-201ENSMUST00000001456 2406 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Rnf40Q3U319 Gm10571-201ENSMUST00000097869 1638 ntBASIC19.43■□□□□ 0.7
Rnf40Q3U319 Htra3-202ENSMUST00000114233 1901 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
Rnf40Q3U319 Zfp865-203ENSMUST00000085427 2751 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
Rnf40Q3U319 Eif4enif1-203ENSMUST00000110049 3614 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Rnf40Q3U319 Arhgap21-201ENSMUST00000114594 7351 ntAPPRIS ALT2 TSL 5 BASIC19.42■□□□□ 0.7
Rnf40Q3U319 Tmem55b-206ENSMUST00000161166 1445 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
Rnf40Q3U319 Lig3-204ENSMUST00000131537 1782 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
Rnf40Q3U319 Lig3-209ENSMUST00000173009 1785 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
Rnf40Q3U319 Glra1-202ENSMUST00000102716 2390 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
Retrieved 100 of 76,532 protein–RNA pairs in 20.4 ms