Protein–RNA interactions for Protein: Q3U1J4

Ddb1, DNA damage-binding protein 1, mousemouse

Known RBP Predictions only

Length 1,140 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddb1Q3U1J4 Atp5g1-203ENSMUST00000107686 691 ntAPPRIS P1 TSL 3 BASIC24.12■■□□□ 1.45
Ddb1Q3U1J4 Trappc6a-201ENSMUST00000002112 785 ntAPPRIS P1 TSL 1 (best) BASIC24.12■■□□□ 1.45
Ddb1Q3U1J4 Gm9803-201ENSMUST00000057649 563 ntAPPRIS P1 BASIC24.12■■□□□ 1.45
Ddb1Q3U1J4 Tpsb2-201ENSMUST00000069616 1081 ntAPPRIS P1 TSL 1 (best) BASIC24.12■■□□□ 1.45
Ddb1Q3U1J4 Acsl3-203ENSMUST00000134566 2492 ntTSL 1 (best) BASIC24.12■■□□□ 1.45
Ddb1Q3U1J4 Sephs2-201ENSMUST00000082428 2177 ntAPPRIS P1 BASIC24.12■■□□□ 1.45
Ddb1Q3U1J4 Lpcat4-201ENSMUST00000028554 2275 ntAPPRIS P1 TSL 1 (best) BASIC24.12■■□□□ 1.45
Ddb1Q3U1J4 Rab34-202ENSMUST00000056241 1558 ntTSL 5 BASIC24.12■■□□□ 1.45
Ddb1Q3U1J4 Map4k3-202ENSMUST00000112389 4231 ntAPPRIS ALT1 TSL 5 BASIC24.11■■□□□ 1.45
Ddb1Q3U1J4 Gm13830-204ENSMUST00000149609 1851 ntTSL 1 (best) BASIC24.11■■□□□ 1.45
Ddb1Q3U1J4 Znhit1-203ENSMUST00000111090 698 ntTSL 2 BASIC24.11■■□□□ 1.45
Ddb1Q3U1J4 Gm11973-203ENSMUST00000155498 867 ntTSL 3 BASIC24.11■■□□□ 1.45
Ddb1Q3U1J4 Fuz-209ENSMUST00000208179 1164 ntTSL 5 BASIC24.11■■□□□ 1.45
Ddb1Q3U1J4 AC107452.1-201ENSMUST00000227963 481 ntBASIC24.11■■□□□ 1.45
Ddb1Q3U1J4 Uchl1-201ENSMUST00000031131 1177 ntAPPRIS P1 TSL 1 (best) BASIC24.11■■□□□ 1.45
Ddb1Q3U1J4 Ints11-201ENSMUST00000030901 2368 ntAPPRIS P1 TSL 1 (best) BASIC24.11■■□□□ 1.45
Ddb1Q3U1J4 Atn1-201ENSMUST00000088357 4433 ntAPPRIS P1 TSL 1 (best) BASIC24.11■■□□□ 1.45
Ddb1Q3U1J4 Kremen2-201ENSMUST00000046525 2123 ntAPPRIS P1 TSL 1 (best) BASIC24.11■■□□□ 1.45
Ddb1Q3U1J4 Mrpl15-205ENSMUST00000146665 1569 ntTSL 1 (best) BASIC24.11■■□□□ 1.45
Ddb1Q3U1J4 Matk-204ENSMUST00000120265 1618 ntAPPRIS ALT2 TSL 5 BASIC24.1■■□□□ 1.45
Ddb1Q3U1J4 Gnas-208ENSMUST00000109087 1716 ntAPPRIS P4 TSL 1 (best) BASIC24.1■■□□□ 1.45
Ddb1Q3U1J4 Gm10459-201ENSMUST00000202708 1155 ntBASIC24.1■■□□□ 1.45
Ddb1Q3U1J4 Josd2-218ENSMUST00000206887 693 ntTSL 5 BASIC24.1■■□□□ 1.45
Ddb1Q3U1J4 Gm30025-201ENSMUST00000218555 728 ntBASIC24.1■■□□□ 1.45
Ddb1Q3U1J4 Metrn-201ENSMUST00000002344 987 ntAPPRIS P1 TSL 5 BASIC24.1■■□□□ 1.45
Ddb1Q3U1J4 AC152827.1-201ENSMUST00000221143 2189 ntBASIC24.1■■□□□ 1.45
Ddb1Q3U1J4 C430049E01Rik-201ENSMUST00000207913 1820 ntAPPRIS P1 TSL 1 (best) BASIC24.1■■□□□ 1.45
Ddb1Q3U1J4 Espn-204ENSMUST00000080042 1402 ntTSL 1 (best) BASIC24.1■■□□□ 1.45
Ddb1Q3U1J4 Ergic3-202ENSMUST00000088650 1349 ntTSL 1 (best) BASIC24.1■■□□□ 1.45
Ddb1Q3U1J4 Adgrb1-201ENSMUST00000042035 6228 ntAPPRIS P1 TSL 1 (best) BASIC24.09■■□□□ 1.45
Ddb1Q3U1J4 Agpat5-201ENSMUST00000033847 2841 ntAPPRIS ALT2 TSL 1 (best) BASIC24.09■■□□□ 1.45
Ddb1Q3U1J4 Grina-201ENSMUST00000023225 1693 ntAPPRIS P1 TSL 1 (best) BASIC24.09■■□□□ 1.45
Ddb1Q3U1J4 Kmt5a-201ENSMUST00000059580 2739 ntAPPRIS P1 TSL 1 (best) BASIC24.09■■□□□ 1.45
Ddb1Q3U1J4 A330009N23Rik-201ENSMUST00000180639 1392 ntTSL 1 (best) BASIC24.09■■□□□ 1.45
Ddb1Q3U1J4 Dlg3-201ENSMUST00000000901 4885 ntTSL 1 (best) BASIC24.09■■□□□ 1.45
Ddb1Q3U1J4 Cfl1-201ENSMUST00000116560 1148 ntTSL 5 BASIC24.09■■□□□ 1.45
Ddb1Q3U1J4 Gm37939-201ENSMUST00000192309 447 ntTSL 5 BASIC24.09■■□□□ 1.45
Ddb1Q3U1J4 Gm21814-202ENSMUST00000203277 873 ntBASIC24.09■■□□□ 1.45
Ddb1Q3U1J4 Ltbr-201ENSMUST00000032489 2107 ntAPPRIS P1 TSL 1 (best) BASIC24.09■■□□□ 1.45
Ddb1Q3U1J4 Yif1b-201ENSMUST00000032809 1111 ntAPPRIS P3 TSL 1 (best) BASIC24.09■■□□□ 1.45
Ddb1Q3U1J4 Atp5l-201ENSMUST00000043675 544 ntAPPRIS P1 TSL 1 (best) BASIC24.09■■□□□ 1.45
Ddb1Q3U1J4 Tpra1-201ENSMUST00000055022 1820 ntAPPRIS P1 TSL 1 (best) BASIC24.09■■□□□ 1.45
Ddb1Q3U1J4 Ankrd33b-203ENSMUST00000110410 2070 ntAPPRIS P3 TSL 1 (best) BASIC24.09■■□□□ 1.45
Ddb1Q3U1J4 Tfap2e-201ENSMUST00000048194 2085 ntAPPRIS P1 TSL 1 (best) BASIC24.09■■□□□ 1.45
Ddb1Q3U1J4 Ets1-202ENSMUST00000050797 1976 ntTSL 1 (best) BASIC24.09■■□□□ 1.45
Ddb1Q3U1J4 Alg9-201ENSMUST00000034561 2873 ntAPPRIS P1 TSL 1 (best) BASIC24.09■■□□□ 1.45
Ddb1Q3U1J4 Pllp-201ENSMUST00000034227 1926 ntAPPRIS P1 TSL 1 (best) BASIC24.08■■□□□ 1.45
Ddb1Q3U1J4 Ntmt1-201ENSMUST00000041830 1387 ntAPPRIS P1 TSL 1 (best) BASIC24.08■■□□□ 1.45
Ddb1Q3U1J4 Brf1-201ENSMUST00000011302 2615 ntAPPRIS P1 TSL 5 BASIC24.08■■□□□ 1.44
Ddb1Q3U1J4 Hat1-202ENSMUST00000112122 1899 ntAPPRIS ALT2 TSL 5 BASIC24.07■■□□□ 1.44
Ddb1Q3U1J4 Gabarap-201ENSMUST00000018711 1351 ntAPPRIS P1 TSL 1 (best) BASIC24.07■■□□□ 1.44
Ddb1Q3U1J4 Dnajc19-204ENSMUST00000120805 551 ntTSL 2 BASIC24.07■■□□□ 1.44
Ddb1Q3U1J4 Nsl1-203ENSMUST00000139340 837 ntTSL 1 (best) BASIC24.07■■□□□ 1.44
Ddb1Q3U1J4 Tmem192-201ENSMUST00000026595 1122 ntAPPRIS P1 TSL 1 (best) BASIC24.07■■□□□ 1.44
Ddb1Q3U1J4 Znrf4-201ENSMUST00000052211 1236 ntAPPRIS P1 BASIC24.07■■□□□ 1.44
Ddb1Q3U1J4 Smox-209ENSMUST00000110189 1919 ntTSL 1 (best) BASIC24.07■■□□□ 1.44
Ddb1Q3U1J4 Aplp1-201ENSMUST00000006828 2343 ntAPPRIS P1 TSL 1 (best) BASIC24.07■■□□□ 1.44
Ddb1Q3U1J4 Lsr-203ENSMUST00000108116 2071 ntAPPRIS ALT2 TSL 1 (best) BASIC24.07■■□□□ 1.44
Ddb1Q3U1J4 Kcnq5-206ENSMUST00000173404 2775 ntAPPRIS ALT2 TSL 5 BASIC24.07■■□□□ 1.44
Ddb1Q3U1J4 Gm26657-201ENSMUST00000181745 1308 ntAPPRIS P1 BASIC24.07■■□□□ 1.44
Ddb1Q3U1J4 Fam57a-201ENSMUST00000094014 2130 ntAPPRIS P1 TSL 1 (best) BASIC24.07■■□□□ 1.44
Ddb1Q3U1J4 Irf2bp1-201ENSMUST00000053713 2734 ntAPPRIS P1 BASIC24.06■■□□□ 1.44
Ddb1Q3U1J4 Syt17-203ENSMUST00000203485 1932 ntTSL 1 (best) BASIC24.06■■□□□ 1.44
Ddb1Q3U1J4 Dvl3-201ENSMUST00000003318 2498 ntAPPRIS P1 TSL 1 (best) BASIC24.06■■□□□ 1.44
Ddb1Q3U1J4 Marc2-201ENSMUST00000068725 1917 ntAPPRIS P1 TSL 1 (best) BASIC24.06■■□□□ 1.44
Ddb1Q3U1J4 Wwc1-201ENSMUST00000018993 4531 ntAPPRIS P1 TSL 1 (best) BASIC24.06■■□□□ 1.44
Ddb1Q3U1J4 Zmynd19-202ENSMUST00000148042 1103 ntTSL 1 (best) BASIC24.06■■□□□ 1.44
Ddb1Q3U1J4 Arhgef4-208ENSMUST00000211073 171 ntBASIC24.06■■□□□ 1.44
Ddb1Q3U1J4 Zfpl1-201ENSMUST00000025707 1287 ntAPPRIS P1 TSL 1 (best) BASIC24.06■■□□□ 1.44
Ddb1Q3U1J4 Gm7367-201ENSMUST00000057611 492 ntBASIC24.06■■□□□ 1.44
Ddb1Q3U1J4 Rpl21-202ENSMUST00000075453 899 ntAPPRIS P1 TSL 1 (best) BASIC24.06■■□□□ 1.44
Ddb1Q3U1J4 Cbln2-201ENSMUST00000068423 2475 ntAPPRIS P1 TSL 1 (best) BASIC24.06■■□□□ 1.44
Ddb1Q3U1J4 Gm17641-201ENSMUST00000166328 2350 ntBASIC24.06■■□□□ 1.44
Ddb1Q3U1J4 Irak1-202ENSMUST00000068286 2537 ntAPPRIS P3 TSL 1 (best) BASIC24.06■■□□□ 1.44
Ddb1Q3U1J4 Nipa1-201ENSMUST00000052204 3183 ntAPPRIS P1 TSL 1 (best) BASIC24.05■■□□□ 1.44
Ddb1Q3U1J4 Rchy1-201ENSMUST00000031345 1967 ntAPPRIS P1 TSL 1 (best) BASIC24.05■■□□□ 1.44
Ddb1Q3U1J4 Fbxl3-204ENSMUST00000132004 2534 ntTSL 1 (best) BASIC24.05■■□□□ 1.44
Ddb1Q3U1J4 Slc30a1-201ENSMUST00000044954 5244 ntAPPRIS P1 TSL 1 (best) BASIC24.05■■□□□ 1.44
Ddb1Q3U1J4 Gm16731-201ENSMUST00000132432 922 ntTSL 1 (best) BASIC24.05■■□□□ 1.44
Ddb1Q3U1J4 Mfsd4b2-201ENSMUST00000045526 2285 ntAPPRIS P1 TSL 1 (best) BASIC24.05■■□□□ 1.44
Ddb1Q3U1J4 Jkamp-202ENSMUST00000117449 1874 ntAPPRIS ALT2 TSL 1 (best) BASIC24.04■■□□□ 1.44
Ddb1Q3U1J4 Fgf8-201ENSMUST00000026240 1117 ntAPPRIS P4 TSL 1 (best) BASIC24.04■■□□□ 1.44
Ddb1Q3U1J4 Dbndd2-201ENSMUST00000017878 1338 ntAPPRIS P1 TSL 2 BASIC24.04■■□□□ 1.44
Ddb1Q3U1J4 Dstn-201ENSMUST00000103172 1911 ntAPPRIS P1 TSL 1 (best) BASIC24.04■■□□□ 1.44
Ddb1Q3U1J4 Zfp653-201ENSMUST00000043922 2108 ntAPPRIS P3 TSL 1 (best) BASIC24.04■■□□□ 1.44
Ddb1Q3U1J4 Bspry-202ENSMUST00000107449 2167 ntAPPRIS ALT2 TSL 1 (best) BASIC24.03■■□□□ 1.44
Ddb1Q3U1J4 Gm5901-201ENSMUST00000106805 1140 ntAPPRIS P1 TSL 5 BASIC24.03■■□□□ 1.44
Ddb1Q3U1J4 Moap1-202ENSMUST00000178384 1284 ntAPPRIS P1 TSL 2 BASIC24.03■■□□□ 1.44
Ddb1Q3U1J4 Gm43183-201ENSMUST00000200632 547 ntBASIC24.03■■□□□ 1.44
Ddb1Q3U1J4 Fkbp11-201ENSMUST00000003445 731 ntAPPRIS P1 TSL 1 (best) BASIC24.03■■□□□ 1.44
Ddb1Q3U1J4 Hoxb6-202ENSMUST00000173432 1964 ntAPPRIS P1 TSL 5 BASIC24.03■■□□□ 1.44
Ddb1Q3U1J4 AB124611-202ENSMUST00000086361 1310 ntAPPRIS ALT2 TSL 1 (best) BASIC24.03■■□□□ 1.44
Ddb1Q3U1J4 Zmynd10-201ENSMUST00000010188 1765 ntAPPRIS P1 TSL 1 (best) BASIC24.03■■□□□ 1.44
Ddb1Q3U1J4 Krt24-201ENSMUST00000017255 1847 ntAPPRIS P1 TSL 1 (best) BASIC24.03■■□□□ 1.44
Ddb1Q3U1J4 Ctdsp1-201ENSMUST00000027367 2876 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.44
Ddb1Q3U1J4 Slc9a2-203ENSMUST00000192345 2507 ntTSL 1 (best) BASIC24.02■■□□□ 1.44
Ddb1Q3U1J4 Zfp821-206ENSMUST00000212964 2033 ntTSL 1 (best) BASIC24.02■■□□□ 1.44
Ddb1Q3U1J4 Gm13559-201ENSMUST00000120476 863 ntBASIC24.02■■□□□ 1.44
Ddb1Q3U1J4 Rcbtb2-217ENSMUST00000167401 868 ntTSL 5 BASIC24.02■■□□□ 1.44
Ddb1Q3U1J4 Gm6659-201ENSMUST00000174752 547 ntBASIC24.02■■□□□ 1.44
Retrieved 100 of 76,532 protein–RNA pairs in 21.6 ms