Protein–RNA interactions for Protein: P86448

Trim43b, Tripartite motif-containing protein 43B, mousemouse

Predictions only

Length 445 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim43bP86448 Lig3-204ENSMUST00000131537 1782 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
Trim43bP86448 Lig3-209ENSMUST00000173009 1785 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
Trim43bP86448 Paip2-205ENSMUST00000115737 713 ntAPPRIS P1 TSL 3 BASIC19.3■□□□□ 0.68
Trim43bP86448 Rps2-208ENSMUST00000170715 998 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Trim43bP86448 4930519A11Rik-202ENSMUST00000221053 667 ntTSL 3 BASIC19.3■□□□□ 0.68
Trim43bP86448 Ddx41-201ENSMUST00000021956 2205 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Trim43bP86448 Gmds-201ENSMUST00000041859 1713 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Trim43bP86448 Gm37352-201ENSMUST00000193908 2181 ntBASIC19.3■□□□□ 0.68
Trim43bP86448 Arhgap27-202ENSMUST00000092557 1504 ntTSL 2 BASIC19.3■□□□□ 0.68
Trim43bP86448 Gas1-201ENSMUST00000065086 2961 ntAPPRIS ALT2 BASIC19.29■□□□□ 0.68
Trim43bP86448 Golga7b-202ENSMUST00000122375 2836 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Trim43bP86448 Pgam5-202ENSMUST00000112505 2098 ntAPPRIS ALT1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Trim43bP86448 Gm11762-201ENSMUST00000135630 1705 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
Trim43bP86448 Rasl10b-201ENSMUST00000021022 996 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Trim43bP86448 Gtsf1-201ENSMUST00000023129 819 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Trim43bP86448 1700012B09Rik-201ENSMUST00000060330 688 ntAPPRIS P2 TSL 1 (best) BASIC19.29■□□□□ 0.68
Trim43bP86448 Dtd2-202ENSMUST00000085404 1012 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
Trim43bP86448 Sae1-204ENSMUST00000211741 1663 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
Trim43bP86448 Adam22-205ENSMUST00000115385 2318 ntTSL 2 BASIC19.29■□□□□ 0.68
Trim43bP86448 Sstr1-202ENSMUST00000110671 1752 ntAPPRIS P1 TSL 2 BASIC19.29■□□□□ 0.68
Trim43bP86448 Zfp710-204ENSMUST00000206039 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
Trim43bP86448 Hoxa5-201ENSMUST00000048794 1877 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Trim43bP86448 Larp1b-202ENSMUST00000048490 2354 ntAPPRIS P2 TSL 1 (best) BASIC19.28■□□□□ 0.68
Trim43bP86448 Cd82-201ENSMUST00000028644 1824 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Trim43bP86448 Runx2-204ENSMUST00000159943 2316 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
Trim43bP86448 Wdr41-208ENSMUST00000222995 1112 ntTSL 5 BASIC19.28■□□□□ 0.68
Trim43bP86448 Tulp1-201ENSMUST00000041819 2017 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Trim43bP86448 Cct4-201ENSMUST00000020562 1634 ntTSL 5 BASIC19.28■□□□□ 0.68
Trim43bP86448 Cxxc1-201ENSMUST00000025444 2618 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Trim43bP86448 Coq10b-201ENSMUST00000027125 1733 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
Trim43bP86448 1700003E16Rik-202ENSMUST00000203203 2070 ntTSL 2 BASIC19.28■□□□□ 0.68
Trim43bP86448 Hirip3-201ENSMUST00000037248 2766 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Trim43bP86448 2310035C23Rik-202ENSMUST00000086721 5414 ntAPPRIS ALT2 TSL 5 BASIC19.27■□□□□ 0.68
Trim43bP86448 5031439G07Rik-201ENSMUST00000047144 6845 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Trim43bP86448 Tmem234-201ENSMUST00000102591 1437 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Trim43bP86448 Ssx2ip-204ENSMUST00000106153 3446 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.68
Trim43bP86448 Mmp15-201ENSMUST00000034243 5135 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Trim43bP86448 Dtymk-202ENSMUST00000112890 1055 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
Trim43bP86448 Gm26881-201ENSMUST00000180426 593 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
Trim43bP86448 Cdc34b-202ENSMUST00000188741 1252 ntBASIC19.27■□□□□ 0.68
Trim43bP86448 Cdc34-201ENSMUST00000020550 1266 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Trim43bP86448 Cdc34b-201ENSMUST00000021240 1233 ntAPPRIS P1 BASIC19.27■□□□□ 0.68
Trim43bP86448 Cdca4-201ENSMUST00000062092 2425 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Trim43bP86448 Syt6-205ENSMUST00000121834 1710 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Trim43bP86448 Hoxd4-202ENSMUST00000111980 1494 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
Trim43bP86448 Derl2-207ENSMUST00000171041 1466 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
Trim43bP86448 Inppl1-202ENSMUST00000165052 4730 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
Trim43bP86448 Syncrip-205ENSMUST00000173801 2944 ntAPPRIS ALT1 TSL 1 (best) BASIC19.27■□□□□ 0.67
Trim43bP86448 Rrad-201ENSMUST00000034351 1577 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
Trim43bP86448 Tomm40-202ENSMUST00000093552 1577 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
Trim43bP86448 Nudt10-201ENSMUST00000103006 1775 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
Trim43bP86448 Mgll-202ENSMUST00000113581 1308 ntTSL 5 BASIC19.26■□□□□ 0.67
Trim43bP86448 Gabra4-205ENSMUST00000199357 2407 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
Trim43bP86448 Itgb5-201ENSMUST00000069345 3056 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
Trim43bP86448 Ube2q2-201ENSMUST00000059555 3456 ntAPPRIS P3 TSL 1 (best) BASIC19.26■□□□□ 0.67
Trim43bP86448 Plin1-201ENSMUST00000032762 1916 ntAPPRIS P1 TSL 5 BASIC19.26■□□□□ 0.67
Trim43bP86448 AB124611-203ENSMUST00000173769 1188 ntAPPRIS P3 TSL 1 (best) BASIC19.26■□□□□ 0.67
Trim43bP86448 Acbd6-202ENSMUST00000080138 993 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
Trim43bP86448 Runx2-210ENSMUST00000162373 1565 ntAPPRIS ALT2 TSL 5 BASIC19.26■□□□□ 0.67
Trim43bP86448 Slc11a1-211ENSMUST00000187516 1893 ntAPPRIS ALT2 TSL 5 BASIC19.26■□□□□ 0.67
Trim43bP86448 Foxp1-230ENSMUST00000177437 2468 ntAPPRIS P2 TSL 1 (best) BASIC19.26■□□□□ 0.67
Trim43bP86448 Miga1-201ENSMUST00000068243 2689 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
Trim43bP86448 Lrch3-201ENSMUST00000023491 5536 ntAPPRIS P3 TSL 1 (best) BASIC19.26■□□□□ 0.67
Trim43bP86448 Panx1-202ENSMUST00000164273 5732 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Trim43bP86448 Rce1-201ENSMUST00000025823 1402 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Trim43bP86448 Phf23-204ENSMUST00000133485 1607 ntTSL 5 BASIC19.25■□□□□ 0.67
Trim43bP86448 Zdhhc13-201ENSMUST00000118927 2410 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Trim43bP86448 Kdm1a-202ENSMUST00000105847 3028 ntAPPRIS ALT2 TSL 5 BASIC19.25■□□□□ 0.67
Trim43bP86448 Marcks-201ENSMUST00000092584 4048 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Trim43bP86448 Fzr1-205ENSMUST00000140901 3057 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Trim43bP86448 Hbs1l-202ENSMUST00000061324 1998 ntTSL 3 BASIC19.25■□□□□ 0.67
Trim43bP86448 Vgll2-202ENSMUST00000163017 1650 ntAPPRIS P3 TSL 1 (best) BASIC19.25■□□□□ 0.67
Trim43bP86448 Gmpr-201ENSMUST00000000260 1580 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Trim43bP86448 Gm15270-201ENSMUST00000125158 870 ntTSL 3 BASIC19.25■□□□□ 0.67
Trim43bP86448 Vgf-204ENSMUST00000190827 2834 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Trim43bP86448 Lemd3-201ENSMUST00000119093 4370 ntAPPRIS ALT2 TSL 2 BASIC19.25■□□□□ 0.67
Trim43bP86448 Chst7-201ENSMUST00000044138 2206 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Trim43bP86448 Tmem39b-201ENSMUST00000102588 1810 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Trim43bP86448 Mprip-201ENSMUST00000066330 7765 ntAPPRIS ALT2 TSL 5 BASIC19.25■□□□□ 0.67
Trim43bP86448 Itsn1-206ENSMUST00000113999 5393 ntTSL 5 BASIC19.25■□□□□ 0.67
Trim43bP86448 Vat1-201ENSMUST00000040430 2766 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Trim43bP86448 Cckbr-201ENSMUST00000033189 2573 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Trim43bP86448 Gm4737-201ENSMUST00000059524 2093 ntAPPRIS P1 BASIC19.24■□□□□ 0.67
Trim43bP86448 Fam129b-201ENSMUST00000028135 3714 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Trim43bP86448 Herpud2-201ENSMUST00000008573 2781 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Trim43bP86448 Pparg-202ENSMUST00000171644 2125 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Trim43bP86448 Krtap5-2-202ENSMUST00000190456 1471 ntAPPRIS P2 BASIC19.24■□□□□ 0.67
Trim43bP86448 4930412F12Rik-201ENSMUST00000211700 1471 ntBASIC19.24■□□□□ 0.67
Trim43bP86448 Kcnt1-203ENSMUST00000114172 5219 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
Trim43bP86448 Ddx39b-203ENSMUST00000173731 2848 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Trim43bP86448 E130218I03Rik-201ENSMUST00000122952 943 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Trim43bP86448 Rpusd3-204ENSMUST00000129047 1045 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
Trim43bP86448 Gm11650-201ENSMUST00000141271 1145 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
Trim43bP86448 Gm20621-202ENSMUST00000176618 1234 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
Trim43bP86448 Smad6-203ENSMUST00000179458 273 ntBASIC19.24■□□□□ 0.67
Trim43bP86448 Gm43060-201ENSMUST00000200621 289 ntBASIC19.24■□□□□ 0.67
Trim43bP86448 Ntsr2-202ENSMUST00000220892 846 ntTSL 3 BASIC19.24■□□□□ 0.67
Trim43bP86448 Rpusd3-201ENSMUST00000060634 1224 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
Trim43bP86448 Nlgn2-202ENSMUST00000108634 5568 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Trim43bP86448 Anks1b-217ENSMUST00000182550 1868 ntTSL 5 BASIC19.24■□□□□ 0.67
Retrieved 100 of 76,532 protein–RNA pairs in 18.1 ms