Protein–RNA interactions for Protein: P70390

Shox2, Short stature homeobox protein 2, mousemouse

Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shox2P70390 3830408C21Rik-206ENSMUST00000225489 1810 ntBASIC18.66■□□□□ 0.58
Shox2P70390 Ube2e3-202ENSMUST00000121433 1235 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
Shox2P70390 Gm16599-201ENSMUST00000148082 1182 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
Shox2P70390 Vax1-201ENSMUST00000172821 1044 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Shox2P70390 Ankrd11-207ENSMUST00000212937 943 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
Shox2P70390 Nsd1-203ENSMUST00000224156 1149 ntBASIC18.66■□□□□ 0.58
Shox2P70390 Ostm1-201ENSMUST00000040718 3006 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Shox2P70390 Msi2-201ENSMUST00000092794 1855 ntAPPRIS P2 TSL 1 (best) BASIC18.66■□□□□ 0.58
Shox2P70390 Zbtb24-201ENSMUST00000080771 2844 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Shox2P70390 Mapre3-201ENSMUST00000031058 2021 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Shox2P70390 Rmnd1-201ENSMUST00000042251 3139 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Shox2P70390 Gpaa1-210ENSMUST00000172281 1809 ntTSL 5 BASIC18.65■□□□□ 0.58
Shox2P70390 Puf60-201ENSMUST00000002599 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
Shox2P70390 Anks6-202ENSMUST00000107747 3980 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
Shox2P70390 March11-202ENSMUST00000140840 1558 ntAPPRIS P3 TSL 2 BASIC18.65■□□□□ 0.58
Shox2P70390 BC051019-202ENSMUST00000106735 1957 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Shox2P70390 Zrsr2-202ENSMUST00000112289 2735 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
Shox2P70390 Rcn1-201ENSMUST00000006128 2720 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Shox2P70390 4930527J03Rik-201ENSMUST00000094270 543 ntBASIC18.65■□□□□ 0.58
Shox2P70390 Podxl-201ENSMUST00000026698 5379 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Shox2P70390 Cog2-201ENSMUST00000034460 2825 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Shox2P70390 2210011C24Rik-204ENSMUST00000190457 1351 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Shox2P70390 Ankrd22-201ENSMUST00000025686 1766 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Shox2P70390 Otud7a-201ENSMUST00000058476 3483 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Shox2P70390 Akain1-201ENSMUST00000169935 2296 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Shox2P70390 Rilp-201ENSMUST00000042972 1489 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Shox2P70390 Lzts2-201ENSMUST00000039016 2825 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
Shox2P70390 Sigmar1-202ENSMUST00000071561 1547 ntTSL 1 (best) BASIC18.64■□□□□ 0.58
Shox2P70390 Chd5-205ENSMUST00000164662 9375 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.58
Shox2P70390 Tfap2a-208ENSMUST00000224999 2058 ntAPPRIS ALT1 BASIC18.64■□□□□ 0.57
Shox2P70390 Rxrb-203ENSMUST00000173354 1743 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
Shox2P70390 Ythdc1-203ENSMUST00000120498 3269 ntAPPRIS ALT2 TSL 5 BASIC18.64■□□□□ 0.57
Shox2P70390 Klhl15-202ENSMUST00000113908 1235 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
Shox2P70390 4930524J08Rik-201ENSMUST00000046721 603 ntAPPRIS P1 BASIC18.64■□□□□ 0.57
Shox2P70390 Ccdc74a-201ENSMUST00000056962 1273 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.57
Shox2P70390 Chmp2b-201ENSMUST00000004965 1838 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Shox2P70390 Prodh-201ENSMUST00000003620 2385 ntAPPRIS P2 TSL 1 (best) BASIC18.64■□□□□ 0.57
Shox2P70390 Zcchc4-203ENSMUST00000113904 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
Shox2P70390 Arl1-202ENSMUST00000116234 2080 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Shox2P70390 Chst1-201ENSMUST00000065797 2680 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Shox2P70390 Nectin1-201ENSMUST00000034510 5653 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Shox2P70390 Dennd3-201ENSMUST00000043414 5299 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Shox2P70390 Lypla2-202ENSMUST00000105852 1588 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Shox2P70390 4930560O18Rik-201ENSMUST00000207051 1595 ntBASIC18.64■□□□□ 0.57
Shox2P70390 Nrxn1-217ENSMUST00000174337 3021 ntTSL 5 BASIC18.63■□□□□ 0.57
Shox2P70390 Eid2b-201ENSMUST00000094651 1751 ntAPPRIS P1 BASIC18.63■□□□□ 0.57
Shox2P70390 Ppm1b-202ENSMUST00000112304 3262 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
Shox2P70390 Lgi2-202ENSMUST00000199942 6273 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
Shox2P70390 Bex4-201ENSMUST00000116527 837 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Shox2P70390 Etf1-202ENSMUST00000180351 108 ntBASIC18.63■□□□□ 0.57
Shox2P70390 1700020G03Rik-201ENSMUST00000211264 889 ntBASIC18.63■□□□□ 0.57
Shox2P70390 Fgf4-201ENSMUST00000060336 3030 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Shox2P70390 Pdia6-201ENSMUST00000057288 2175 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Shox2P70390 Eif5a-208ENSMUST00000108611 1353 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Shox2P70390 Mycn-202ENSMUST00000130990 2522 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Shox2P70390 Letm2-209ENSMUST00000210810 1538 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
Shox2P70390 Misp-205ENSMUST00000219305 2569 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Shox2P70390 6030445D17Rik-201ENSMUST00000084593 1728 ntAPPRIS P1 BASIC18.63■□□□□ 0.57
Shox2P70390 Mrpl15-203ENSMUST00000130201 1894 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
Shox2P70390 Dbnl-203ENSMUST00000109845 2001 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
Shox2P70390 Zfp92-202ENSMUST00000086470 2050 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
Shox2P70390 Slc6a8-204ENSMUST00000114467 2509 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Shox2P70390 Nus1-201ENSMUST00000023830 4605 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Shox2P70390 A730035I17Rik-205ENSMUST00000205851 684 ntBASIC18.62■□□□□ 0.57
Shox2P70390 Mdfi-201ENSMUST00000035375 1371 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Shox2P70390 Gm42911-201ENSMUST00000199360 1630 ntBASIC18.62■□□□□ 0.57
Shox2P70390 Ankle2-201ENSMUST00000031474 5215 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
Shox2P70390 Lsp1-202ENSMUST00000038946 1828 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
Shox2P70390 Podnl1-201ENSMUST00000093380 2090 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Shox2P70390 Zbtb9-201ENSMUST00000120016 2798 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Shox2P70390 Jph1-201ENSMUST00000038382 4809 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Shox2P70390 Fam78b-205ENSMUST00000165874 4986 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Shox2P70390 Cnr1-201ENSMUST00000057188 5807 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Shox2P70390 Gm26774-201ENSMUST00000181534 2401 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
Shox2P70390 Fam109a-201ENSMUST00000056654 2368 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Shox2P70390 Gpc3-202ENSMUST00000114857 1880 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
Shox2P70390 Gm15408-201ENSMUST00000124198 1379 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
Shox2P70390 Btf3l4-203ENSMUST00000102741 1033 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Shox2P70390 Smad1-202ENSMUST00000066091 3099 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Shox2P70390 Nlgn2-201ENSMUST00000056484 5003 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Shox2P70390 Ddx28-201ENSMUST00000058579 2262 ntAPPRIS P1 BASIC18.61■□□□□ 0.57
Shox2P70390 Bend6-202ENSMUST00000115161 2231 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
Shox2P70390 Slc2a8-201ENSMUST00000028129 2108 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Shox2P70390 Qpct-201ENSMUST00000040789 1924 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Shox2P70390 Dnaja3-202ENSMUST00000115854 2505 ntAPPRIS ALT1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Shox2P70390 Sac3d1-201ENSMUST00000113533 1374 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Shox2P70390 Dexi-201ENSMUST00000038281 1389 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Shox2P70390 Kmt5c-201ENSMUST00000098853 2189 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Shox2P70390 Gli3-204ENSMUST00000141194 466 ntTSL 2 BASIC18.6■□□□□ 0.57
Shox2P70390 Gm13001-201ENSMUST00000154285 774 ntTSL 2 BASIC18.6■□□□□ 0.57
Shox2P70390 Smagp-201ENSMUST00000066068 1132 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Shox2P70390 A130048G24Rik-201ENSMUST00000193052 2750 ntBASIC18.6■□□□□ 0.57
Shox2P70390 1810043G02Rik-201ENSMUST00000105397 1818 ntAPPRIS P2 TSL 1 (best) BASIC18.6■□□□□ 0.57
Shox2P70390 A030001D20Rik-201ENSMUST00000211533 1542 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
Shox2P70390 Ankrd39-201ENSMUST00000001172 2109 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Shox2P70390 Akt2-205ENSMUST00000108344 4544 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Shox2P70390 Atg16l2-202ENSMUST00000122116 2083 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
Shox2P70390 Cxcl14-202ENSMUST00000224801 1467 ntBASIC18.59■□□□□ 0.57
Shox2P70390 Hnrnpab-203ENSMUST00000109103 1437 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
Shox2P70390 Rps6ka1-202ENSMUST00000105894 3135 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Retrieved 100 of 76,532 protein–RNA pairs in 23.4 ms