Protein–RNA interactions for Protein: P53783

Sox1, Transcription factor SOX-1, mousemouse

Predictions only

Length 391 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sox1P53783 AC156016.1-201ENSMUST00000227190 1035 ntBASIC19.33■□□□□ 0.68
Sox1P53783 Slc27a3-201ENSMUST00000029541 2259 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Sox1P53783 Gm6802-201ENSMUST00000167843 1983 ntBASIC19.33■□□□□ 0.68
Sox1P53783 Kif27-203ENSMUST00000225388 5121 ntAPPRIS P1 BASIC19.33■□□□□ 0.68
Sox1P53783 Dmrt3-201ENSMUST00000048935 2390 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Sox1P53783 Zfp467-202ENSMUST00000114556 2287 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
Sox1P53783 Snrnp70-201ENSMUST00000074575 1735 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Sox1P53783 Ppp1r12c-201ENSMUST00000013886 2983 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Sox1P53783 Gm16192-201ENSMUST00000148357 937 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
Sox1P53783 Gm17092-201ENSMUST00000166606 698 ntTSL 2 BASIC19.32■□□□□ 0.68
Sox1P53783 Grtp1-204ENSMUST00000209691 1030 ntTSL 5 BASIC19.32■□□□□ 0.68
Sox1P53783 Map4k3-202ENSMUST00000112389 4231 ntAPPRIS ALT1 TSL 5 BASIC19.32■□□□□ 0.68
Sox1P53783 Irak1-202ENSMUST00000068286 2537 ntAPPRIS P3 TSL 1 (best) BASIC19.32■□□□□ 0.68
Sox1P53783 Psme4-201ENSMUST00000041231 6491 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Sox1P53783 AC122428.2-201ENSMUST00000216321 1832 ntBASIC19.32■□□□□ 0.68
Sox1P53783 Mrpl15-205ENSMUST00000146665 1569 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
Sox1P53783 Cklf-208ENSMUST00000212433 1304 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
Sox1P53783 Actr5-201ENSMUST00000045644 2402 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Sox1P53783 Hhex-201ENSMUST00000025944 1802 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Sox1P53783 Gm43183-201ENSMUST00000200632 547 ntBASIC19.31■□□□□ 0.68
Sox1P53783 Otx2os1-204ENSMUST00000227221 751 ntBASIC19.31■□□□□ 0.68
Sox1P53783 Nkx2-6-201ENSMUST00000062437 1134 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Sox1P53783 Hpse-202ENSMUST00000112908 1958 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
Sox1P53783 Adap2-201ENSMUST00000021050 1785 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Sox1P53783 Dync1i1-203ENSMUST00000115556 2718 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
Sox1P53783 Mras-201ENSMUST00000035045 4701 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Sox1P53783 Trappc3-201ENSMUST00000030660 1336 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Sox1P53783 Arnt-204ENSMUST00000107160 783 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
Sox1P53783 Ssr2-207ENSMUST00000195014 1059 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Sox1P53783 Gm18032-201ENSMUST00000222541 538 ntBASIC19.3■□□□□ 0.68
Sox1P53783 Rhov-201ENSMUST00000037360 1703 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Sox1P53783 Foxf2-201ENSMUST00000042054 2363 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Sox1P53783 Slc35f4-201ENSMUST00000074368 1931 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Sox1P53783 Etnk1-203ENSMUST00000204947 1791 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
Sox1P53783 Coq9-201ENSMUST00000034234 1789 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Sox1P53783 Samd8-201ENSMUST00000022292 1574 ntAPPRIS P2 TSL 1 (best) BASIC19.29■□□□□ 0.68
Sox1P53783 1810010H24Rik-201ENSMUST00000106767 1100 ntAPPRIS P2 TSL 2 BASIC19.29■□□□□ 0.68
Sox1P53783 Lce1j-201ENSMUST00000107304 420 ntAPPRIS P1 BASIC19.29■□□□□ 0.68
Sox1P53783 Gabarapl1-202ENSMUST00000204487 902 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
Sox1P53783 Gm32031-203ENSMUST00000208993 649 ntTSL 2 BASIC19.29■□□□□ 0.68
Sox1P53783 Gm9745-201ENSMUST00000021573 684 ntAPPRIS P1 TSL 5 BASIC19.29■□□□□ 0.68
Sox1P53783 Nthl1-201ENSMUST00000047611 1080 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Sox1P53783 Spsb2-202ENSMUST00000052727 1219 ntAPPRIS P1 TSL 3 BASIC19.29■□□□□ 0.68
Sox1P53783 Gzmd-201ENSMUST00000082093 964 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Sox1P53783 Inafm2-201ENSMUST00000149978 3053 ntAPPRIS P1 BASIC19.29■□□□□ 0.68
Sox1P53783 Habp4-201ENSMUST00000021929 2564 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Sox1P53783 Cerkl-205ENSMUST00000143974 1623 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Sox1P53783 Ppm1g-205ENSMUST00000202294 1868 ntTSL 5 BASIC19.28■□□□□ 0.68
Sox1P53783 Aplf-201ENSMUST00000032130 1889 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Sox1P53783 Rmdn2-208ENSMUST00000225357 2118 ntAPPRIS P1 BASIC19.28■□□□□ 0.68
Sox1P53783 Ttc7b-201ENSMUST00000062957 3446 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Sox1P53783 Bend6-201ENSMUST00000062289 2487 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Sox1P53783 AC164550.2-201ENSMUST00000219127 2086 ntTSL 5 BASIC19.28■□□□□ 0.68
Sox1P53783 Mageb3-201ENSMUST00000104936 2341 ntAPPRIS P1 BASIC19.28■□□□□ 0.68
Sox1P53783 Pld6-202ENSMUST00000125307 948 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Sox1P53783 AC154471.1-201ENSMUST00000224418 436 ntBASIC19.28■□□□□ 0.68
Sox1P53783 AC159205.6-201ENSMUST00000224935 887 ntBASIC19.28■□□□□ 0.68
Sox1P53783 Grrp1-201ENSMUST00000060050 1226 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Sox1P53783 Gfra3-201ENSMUST00000025224 1992 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Sox1P53783 Gp1bb-202ENSMUST00000167388 1847 ntAPPRIS ALT2 TSL 2 BASIC19.28■□□□□ 0.68
Sox1P53783 Dcun1d5-202ENSMUST00000215683 2421 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Sox1P53783 AC165249.1-201ENSMUST00000220031 1599 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
Sox1P53783 Galnt16-204ENSMUST00000218943 2047 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Sox1P53783 Ltk-206ENSMUST00000182203 2232 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
Sox1P53783 Htra2-203ENSMUST00000113963 1629 ntTSL 5 BASIC19.27■□□□□ 0.68
Sox1P53783 Ngb-201ENSMUST00000021420 1616 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.68
Sox1P53783 Gm3375-201ENSMUST00000203929 796 ntBASIC19.27■□□□□ 0.68
Sox1P53783 Hint1-201ENSMUST00000020504 636 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Sox1P53783 Nanp-201ENSMUST00000066640 1394 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Sox1P53783 Dedd2-202ENSMUST00000205271 1942 ntAPPRIS P1 TSL 5 BASIC19.27■□□□□ 0.67
Sox1P53783 Drd4-201ENSMUST00000026569 2799 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
Sox1P53783 Homer3-206ENSMUST00000140212 2608 ntAPPRIS P3 TSL 1 (best) BASIC19.26■□□□□ 0.67
Sox1P53783 Suz12-206ENSMUST00000163272 4303 ntAPPRIS ALT2 TSL 5 BASIC19.26■□□□□ 0.67
Sox1P53783 Gm43672-201ENSMUST00000199072 1731 ntBASIC19.26■□□□□ 0.67
Sox1P53783 Gm3164-201ENSMUST00000168866 1945 ntAPPRIS P1 TSL 5 BASIC19.26■□□□□ 0.67
Sox1P53783 Pkd2-201ENSMUST00000086831 5219 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Sox1P53783 Gm15952-201ENSMUST00000122858 490 ntTSL 3 BASIC19.26■□□□□ 0.67
Sox1P53783 Gm7284-201ENSMUST00000131667 944 ntBASIC19.26■□□□□ 0.67
Sox1P53783 Scamp4-202ENSMUST00000180350 1271 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Sox1P53783 Gm18959-201ENSMUST00000208954 655 ntBASIC19.26■□□□□ 0.67
Sox1P53783 Trappc6a-201ENSMUST00000002112 785 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Sox1P53783 Odf3b-204ENSMUST00000227834 930 ntBASIC19.26■□□□□ 0.67
Sox1P53783 Nfu1-201ENSMUST00000032060 948 ntAPPRIS P3 TSL 1 (best) BASIC19.26■□□□□ 0.67
Sox1P53783 Cep78-201ENSMUST00000047704 2548 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Sox1P53783 Lhx2-203ENSMUST00000143783 1696 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
Sox1P53783 Gm43909-201ENSMUST00000203443 1876 ntBASIC19.26■□□□□ 0.67
Sox1P53783 Kalrn-208ENSMUST00000114961 6128 ntTSL 5 BASIC19.26■□□□□ 0.67
Sox1P53783 Msl1-203ENSMUST00000107485 2091 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
Sox1P53783 Osbp-201ENSMUST00000025590 4578 ntAPPRIS P1 TSL 5 BASIC19.25■□□□□ 0.67
Sox1P53783 Macrod2-207ENSMUST00000110067 4730 ntAPPRIS ALT2 TSL 5 BASIC19.25■□□□□ 0.67
Sox1P53783 Gm16262-201ENSMUST00000162306 1751 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Sox1P53783 Spint2-202ENSMUST00000108236 1211 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Sox1P53783 1810062O18Rik-202ENSMUST00000128848 745 ntTSL 3 BASIC19.25■□□□□ 0.67
Sox1P53783 Ccnd2-204ENSMUST00000201637 1006 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Sox1P53783 Gm36736-201ENSMUST00000206060 646 ntTSL 3 BASIC19.25■□□□□ 0.67
Sox1P53783 Gm45631-201ENSMUST00000210318 1244 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Sox1P53783 Pym1-201ENSMUST00000065210 1156 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
Sox1P53783 Tpsb2-201ENSMUST00000069616 1081 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Sox1P53783 Rplp2-201ENSMUST00000084434 964 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Sox1P53783 Thap4-206ENSMUST00000190116 5558 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Retrieved 100 of 76,532 protein–RNA pairs in 23.1 ms