Protein–RNA interactions for Protein: O88551

Cldn1, Claudin-1, mousemouse

Predictions only

Length 211 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cldn1O88551 Prmt8-201ENSMUST00000032500 2724 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Cldn1O88551 AL672049.1-201ENSMUST00000197943 91 ntBASIC16.07■□□□□ 0.16
Cldn1O88551 1810059H22Rik-205ENSMUST00000204570 690 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
Cldn1O88551 6530437J22Rik-201ENSMUST00000207515 773 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
Cldn1O88551 4932443I19Rik-204ENSMUST00000214337 1212 ntAPPRIS ALT2 TSL 5 BASIC16.07■□□□□ 0.16
Cldn1O88551 Rnf208-201ENSMUST00000060818 1137 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Cldn1O88551 Snapc3-202ENSMUST00000071544 942 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
Cldn1O88551 Cox18-201ENSMUST00000048363 1333 ntAPPRIS P3 TSL 1 (best) BASIC16.07■□□□□ 0.16
Cldn1O88551 Wdr20-205ENSMUST00000193053 1351 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
Cldn1O88551 Dlg1-202ENSMUST00000064477 4663 ntAPPRIS P3 TSL 1 (best) BASIC16.07■□□□□ 0.16
Cldn1O88551 Clta-202ENSMUST00000107846 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
Cldn1O88551 Fbxw2-206ENSMUST00000113080 1923 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Cldn1O88551 Ung-201ENSMUST00000031587 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
Cldn1O88551 Atg3-201ENSMUST00000023343 2057 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Cldn1O88551 Gm9817-201ENSMUST00000054395 2531 ntAPPRIS P1 BASIC16.07■□□□□ 0.16
Cldn1O88551 Pdp1-204ENSMUST00000108299 2588 ntAPPRIS ALT2 TSL 2 BASIC16.07■□□□□ 0.16
Cldn1O88551 B430319F04Rik-201ENSMUST00000209731 2669 ntBASIC16.06■□□□□ 0.16
Cldn1O88551 Fbxw2-203ENSMUST00000113075 2260 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
Cldn1O88551 Tarbp1-201ENSMUST00000170518 6383 ntAPPRIS P1 TSL 5 BASIC16.06■□□□□ 0.16
Cldn1O88551 Kremen2-201ENSMUST00000046525 2123 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Cldn1O88551 Sept5-201ENSMUST00000096987 2127 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Cldn1O88551 Aplf-201ENSMUST00000032130 1889 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Cldn1O88551 Gm7102-201ENSMUST00000180168 1624 ntAPPRIS P1 BASIC16.06■□□□□ 0.16
Cldn1O88551 Creb1-203ENSMUST00000171164 1287 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
Cldn1O88551 Klf13-204ENSMUST00000185175 487 ntTSL 2 BASIC16.06■□□□□ 0.16
Cldn1O88551 Smim10l1-204ENSMUST00000191462 574 ntTSL 3 BASIC16.06■□□□□ 0.16
Cldn1O88551 Fitm1-201ENSMUST00000022826 971 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Cldn1O88551 Hoxc12-201ENSMUST00000055562 1031 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Cldn1O88551 Supv3l1-201ENSMUST00000020273 2604 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Cldn1O88551 Adgra2-201ENSMUST00000033876 5760 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Cldn1O88551 4430402I18Rik-201ENSMUST00000025872 2152 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
Cldn1O88551 Lypla2-202ENSMUST00000105852 1588 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Cldn1O88551 Snapc2-201ENSMUST00000011981 1536 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Cldn1O88551 Wasf3-201ENSMUST00000016143 5196 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Cldn1O88551 Taf4b-201ENSMUST00000169862 5149 ntAPPRIS P1 TSL 5 BASIC16.05■□□□□ 0.16
Cldn1O88551 Gm5643-201ENSMUST00000117081 966 ntBASIC16.05■□□□□ 0.16
Cldn1O88551 Dnajb3-201ENSMUST00000119972 1051 ntAPPRIS P1 BASIC16.05■□□□□ 0.16
Cldn1O88551 Hist2h2ac-201ENSMUST00000090782 520 ntAPPRIS P1 BASIC16.05■□□□□ 0.16
Cldn1O88551 Reep6-207ENSMUST00000186864 2015 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.16
Cldn1O88551 Lzts2-202ENSMUST00000178087 2773 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Cldn1O88551 Cdc37l1-205ENSMUST00000224599 1769 ntBASIC16.05■□□□□ 0.16
Cldn1O88551 Hccs-202ENSMUST00000112115 2473 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Cldn1O88551 Cnrip1-201ENSMUST00000058159 1654 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Cldn1O88551 Nkpd1-203ENSMUST00000214205 2309 ntAPPRIS ALT2 TSL 5 BASIC16.05■□□□□ 0.16
Cldn1O88551 Ssbp2-202ENSMUST00000042122 1633 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
Cldn1O88551 Dennd2a-201ENSMUST00000036877 4468 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Cldn1O88551 Whrn-204ENSMUST00000095037 2419 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
Cldn1O88551 Dhx36-201ENSMUST00000029336 5620 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Cldn1O88551 Sap18-201ENSMUST00000111267 660 ntTSL 2 BASIC16.04■□□□□ 0.16
Cldn1O88551 Dohh-206ENSMUST00000131968 672 ntAPPRIS P1 TSL 3 BASIC16.04■□□□□ 0.16
Cldn1O88551 Rex1bd-206ENSMUST00000136913 671 ntAPPRIS ALT2 TSL 5 BASIC16.04■□□□□ 0.16
Cldn1O88551 Nt5c-201ENSMUST00000021082 858 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Cldn1O88551 Mrps10-201ENSMUST00000060752 1109 ntTSL 5 BASIC16.04■□□□□ 0.16
Cldn1O88551 Fxn-201ENSMUST00000081333 1114 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Cldn1O88551 Atrnl1-201ENSMUST00000077282 6581 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Cldn1O88551 Paqr6-204ENSMUST00000147991 1670 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Cldn1O88551 Serbp1-207ENSMUST00000203436 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
Cldn1O88551 Sh3gl1-201ENSMUST00000003268 2072 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Cldn1O88551 Phc2-202ENSMUST00000106079 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
Cldn1O88551 Bhlhe23-201ENSMUST00000108878 2520 ntAPPRIS P1 BASIC16.04■□□□□ 0.16
Cldn1O88551 Cep78-201ENSMUST00000047704 2548 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Cldn1O88551 Fah-201ENSMUST00000032865 1585 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Cldn1O88551 B3galnt1-201ENSMUST00000061826 2028 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Cldn1O88551 Lsm14a-201ENSMUST00000085585 2944 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Cldn1O88551 Pdcd7-201ENSMUST00000048184 2419 ntAPPRIS P2 TSL 1 (best) BASIC16.04■□□□□ 0.16
Cldn1O88551 Cnp-201ENSMUST00000103120 2357 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Cldn1O88551 Ntn1-201ENSMUST00000021284 5738 ntAPPRIS P1 TSL 5 BASIC16.03■□□□□ 0.16
Cldn1O88551 Cacna1a-202ENSMUST00000122053 7589 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
Cldn1O88551 Aire-203ENSMUST00000105396 1749 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
Cldn1O88551 Aire-214ENSMUST00000154374 1712 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
Cldn1O88551 Aire-215ENSMUST00000155021 1737 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
Cldn1O88551 Inpp5a-203ENSMUST00000106098 2826 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Cldn1O88551 Raph1-202ENSMUST00000090293 2409 ntAPPRIS ALT2 TSL 5 BASIC16.03■□□□□ 0.16
Cldn1O88551 Zbtb7a-204ENSMUST00000121840 1676 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
Cldn1O88551 Gm715-201ENSMUST00000117865 831 ntBASIC16.03■□□□□ 0.16
Cldn1O88551 Gm6270-201ENSMUST00000132731 559 ntTSL 5 BASIC16.03■□□□□ 0.16
Cldn1O88551 Serf1-204ENSMUST00000151821 570 ntTSL 2 BASIC16.03■□□□□ 0.16
Cldn1O88551 Irx5-202ENSMUST00000210246 2550 ntTSL 5 BASIC16.03■□□□□ 0.16
Cldn1O88551 Derl2-207ENSMUST00000171041 1466 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
Cldn1O88551 Map2k1-201ENSMUST00000005066 2436 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Cldn1O88551 Zfp282-201ENSMUST00000061890 5573 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Cldn1O88551 Hpse-202ENSMUST00000112908 1958 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.16
Cldn1O88551 Magi2-203ENSMUST00000115267 4478 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
Cldn1O88551 Pabpn1-205ENSMUST00000141446 912 ntAPPRIS ALT2 TSL 3 BASIC16.02■□□□□ 0.16
Cldn1O88551 Gm26879-201ENSMUST00000181127 1176 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
Cldn1O88551 Ccnd2-202ENSMUST00000201066 983 ntTSL 2 BASIC16.02■□□□□ 0.16
Cldn1O88551 Gm45121-201ENSMUST00000205396 1153 ntTSL 5 BASIC16.02■□□□□ 0.16
Cldn1O88551 Hist2h2aa2-201ENSMUST00000074976 528 ntAPPRIS P1 BASIC16.02■□□□□ 0.16
Cldn1O88551 Hist2h2aa1-201ENSMUST00000078756 586 ntAPPRIS P1 BASIC16.02■□□□□ 0.16
Cldn1O88551 Shisa7-203ENSMUST00000119433 3481 ntAPPRIS P2 TSL 1 (best) BASIC16.02■□□□□ 0.15
Cldn1O88551 Smad2-205ENSMUST00000168423 2857 ntAPPRIS P3 TSL 1 (best) BASIC16.02■□□□□ 0.15
Cldn1O88551 3110053B16Rik-202ENSMUST00000140360 2004 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
Cldn1O88551 Rhov-201ENSMUST00000037360 1703 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
Cldn1O88551 Gart-202ENSMUST00000120450 1865 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
Cldn1O88551 March11-203ENSMUST00000152841 1365 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
Cldn1O88551 Rfx7-201ENSMUST00000093820 7988 ntAPPRIS P1 TSL 5 BASIC16.01■□□□□ 0.15
Cldn1O88551 Dennd6a-201ENSMUST00000037585 6638 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Cldn1O88551 Polr1c-201ENSMUST00000087026 1314 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Cldn1O88551 Dxo-201ENSMUST00000046244 1519 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Cldn1O88551 Zfp64-202ENSMUST00000109161 1009 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
Retrieved 100 of 76,532 protein–RNA pairs in 193.3 ms