Protein–RNA interactions for Protein: F7BJK1

Pcdh1, Protocadherin 1 (Fragment), mousemouse

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pcdh1F7BJK1 Nadk2-201ENSMUST00000067760 3731 ntAPPRIS P5 TSL 5 BASIC16.92■□□□□ 0.3
Pcdh1F7BJK1 Alkbh5-201ENSMUST00000044250 5730 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Pcdh1F7BJK1 Cdca4-202ENSMUST00000220899 1994 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Pcdh1F7BJK1 Bicdl1-203ENSMUST00000118576 1874 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
Pcdh1F7BJK1 Plekhm2-202ENSMUST00000084203 4136 ntAPPRIS P3 TSL 5 BASIC16.91■□□□□ 0.3
Pcdh1F7BJK1 Gm12922-201ENSMUST00000120626 809 ntBASIC16.91■□□□□ 0.3
Pcdh1F7BJK1 Zfp963-202ENSMUST00000154063 640 ntTSL 3 BASIC16.91■□□□□ 0.3
Pcdh1F7BJK1 Gm6569-201ENSMUST00000154520 811 ntAPPRIS P1 TSL 3 BASIC16.91■□□□□ 0.3
Pcdh1F7BJK1 Usf2-203ENSMUST00000162228 960 ntTSL 5 BASIC16.91■□□□□ 0.3
Pcdh1F7BJK1 Dctn3-203ENSMUST00000171641 885 ntTSL 3 BASIC16.91■□□□□ 0.3
Pcdh1F7BJK1 Smco4-203ENSMUST00000215907 994 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Pcdh1F7BJK1 Golgb1-201ENSMUST00000023534 498 ntBASIC16.91■□□□□ 0.3
Pcdh1F7BJK1 Alad-201ENSMUST00000030090 1206 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Pcdh1F7BJK1 6330562C20Rik-201ENSMUST00000098867 784 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
Pcdh1F7BJK1 Kcnb1-201ENSMUST00000059826 4015 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Pcdh1F7BJK1 Atp8b2-202ENSMUST00000107396 5705 ntAPPRIS ALT2 TSL 5 BASIC16.91■□□□□ 0.3
Pcdh1F7BJK1 Gm26689-201ENSMUST00000180927 1818 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
Pcdh1F7BJK1 Gm26553-201ENSMUST00000181531 1818 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
Pcdh1F7BJK1 Tlcd1-202ENSMUST00000098545 2897 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
Pcdh1F7BJK1 Atf5-202ENSMUST00000107893 1735 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Pcdh1F7BJK1 Dmtn-207ENSMUST00000228001 2437 ntBASIC16.9■□□□□ 0.3
Pcdh1F7BJK1 Cep170b-202ENSMUST00000101018 6641 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Pcdh1F7BJK1 Actl6b-205ENSMUST00000139395 1592 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Pcdh1F7BJK1 Mrm1-201ENSMUST00000018549 2477 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Pcdh1F7BJK1 Tmem260-209ENSMUST00000226422 6333 ntAPPRIS ALT2 BASIC16.9■□□□□ 0.3
Pcdh1F7BJK1 Nr1h2-202ENSMUST00000107910 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
Pcdh1F7BJK1 Gm3020-202ENSMUST00000167430 1933 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Pcdh1F7BJK1 Gm10409-201ENSMUST00000170123 1933 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Pcdh1F7BJK1 F8a-201ENSMUST00000105111 2505 ntAPPRIS P1 BASIC16.9■□□□□ 0.3
Pcdh1F7BJK1 Gm43213-201ENSMUST00000151866 1790 ntBASIC16.89■□□□□ 0.3
Pcdh1F7BJK1 Fam78b-205ENSMUST00000165874 4986 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.3
Pcdh1F7BJK1 Jph1-201ENSMUST00000038382 4809 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Pcdh1F7BJK1 Brms1l-201ENSMUST00000059250 2609 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Pcdh1F7BJK1 0610040J01Rik-201ENSMUST00000081747 2008 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Pcdh1F7BJK1 Hoxa11os-201ENSMUST00000134512 1839 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
Pcdh1F7BJK1 3830408C21Rik-206ENSMUST00000225489 1810 ntBASIC16.89■□□□□ 0.29
Pcdh1F7BJK1 Psme3-201ENSMUST00000019470 2664 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Pcdh1F7BJK1 Khdc3-201ENSMUST00000034737 1681 ntAPPRIS P3 TSL 1 (best) BASIC16.89■□□□□ 0.29
Pcdh1F7BJK1 Rab40c-207ENSMUST00000167626 2506 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Pcdh1F7BJK1 Smox-206ENSMUST00000110183 1159 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
Pcdh1F7BJK1 Gm45606-201ENSMUST00000209836 2795 ntBASIC16.89■□□□□ 0.29
Pcdh1F7BJK1 Dmwd-202ENSMUST00000108479 2388 ntAPPRIS ALT2 TSL 5 BASIC16.89■□□□□ 0.29
Pcdh1F7BJK1 Stmn4-201ENSMUST00000074523 1303 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Pcdh1F7BJK1 Cnpy1-201ENSMUST00000117098 2661 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
Pcdh1F7BJK1 Tagln-201ENSMUST00000034590 1595 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Pcdh1F7BJK1 Ssc4d-204ENSMUST00000111153 2745 ntAPPRIS P1 TSL 5 BASIC16.89■□□□□ 0.29
Pcdh1F7BJK1 Mdfi-201ENSMUST00000035375 1371 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Pcdh1F7BJK1 Ciz1-201ENSMUST00000048964 2771 ntAPPRIS P3 TSL 1 (best) BASIC16.89■□□□□ 0.29
Pcdh1F7BJK1 Olfm2-204ENSMUST00000217198 2005 ntAPPRIS ALT2 TSL 3 BASIC16.88■□□□□ 0.29
Pcdh1F7BJK1 Il4i1-201ENSMUST00000033015 2048 ntAPPRIS P3 TSL 1 (best) BASIC16.88■□□□□ 0.29
Pcdh1F7BJK1 Sigmar1-202ENSMUST00000071561 1547 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
Pcdh1F7BJK1 0610010K14Rik-209ENSMUST00000108579 667 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
Pcdh1F7BJK1 Gm15202-201ENSMUST00000154188 393 ntTSL 3 BASIC16.88■□□□□ 0.29
Pcdh1F7BJK1 Gm26558-201ENSMUST00000180559 861 ntAPPRIS P1 BASIC16.88■□□□□ 0.29
Pcdh1F7BJK1 Ntsr2-202ENSMUST00000220892 846 ntTSL 3 BASIC16.88■□□□□ 0.29
Pcdh1F7BJK1 Slc25a41-201ENSMUST00000058661 1225 ntAPPRIS P3 TSL 1 (best) BASIC16.88■□□□□ 0.29
Pcdh1F7BJK1 A730056A06Rik-201ENSMUST00000181299 2689 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
Pcdh1F7BJK1 Zfyve9-202ENSMUST00000106657 6459 ntAPPRIS P2 TSL 5 BASIC16.88■□□□□ 0.29
Pcdh1F7BJK1 Nat14-204ENSMUST00000207687 1415 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
Pcdh1F7BJK1 Ssx2ip-204ENSMUST00000106153 3446 ntAPPRIS P3 TSL 1 (best) BASIC16.87■□□□□ 0.29
Pcdh1F7BJK1 Gm4675-202ENSMUST00000164755 2322 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
Pcdh1F7BJK1 Gm43042-201ENSMUST00000198676 1820 ntTSL 5 BASIC16.87■□□□□ 0.29
Pcdh1F7BJK1 Ppp1r3f-201ENSMUST00000115742 3066 ntAPPRIS P3 TSL 1 (best) BASIC16.87■□□□□ 0.29
Pcdh1F7BJK1 Dapk1-207ENSMUST00000226059 5009 ntBASIC16.87■□□□□ 0.29
Pcdh1F7BJK1 Shisa7-203ENSMUST00000119433 3481 ntAPPRIS P2 TSL 1 (best) BASIC16.87■□□□□ 0.29
Pcdh1F7BJK1 D630036H23Rik-201ENSMUST00000171007 940 ntAPPRIS P1 BASIC16.87■□□□□ 0.29
Pcdh1F7BJK1 Wdr41-208ENSMUST00000222995 1112 ntTSL 5 BASIC16.87■□□□□ 0.29
Pcdh1F7BJK1 Hoxb7-201ENSMUST00000049352 1291 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
Pcdh1F7BJK1 Hspb1-201ENSMUST00000005077 903 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
Pcdh1F7BJK1 Vav2-201ENSMUST00000056176 5221 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
Pcdh1F7BJK1 Chka-201ENSMUST00000025760 2319 ntAPPRIS ALT2 TSL 5 BASIC16.87■□□□□ 0.29
Pcdh1F7BJK1 Ttc9-202ENSMUST00000218362 4754 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
Pcdh1F7BJK1 Dap3-201ENSMUST00000090938 4760 ntAPPRIS P2 TSL 1 (best) BASIC16.87■□□□□ 0.29
Pcdh1F7BJK1 Plekhg3-201ENSMUST00000075249 5138 ntAPPRIS P2 TSL 1 (best) BASIC16.87■□□□□ 0.29
Pcdh1F7BJK1 Arid1a-202ENSMUST00000105897 8175 ntAPPRIS P2 TSL 5 BASIC16.87■□□□□ 0.29
Pcdh1F7BJK1 Rce1-201ENSMUST00000025823 1402 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
Pcdh1F7BJK1 Fam71b-201ENSMUST00000063166 2185 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
Pcdh1F7BJK1 Klhl25-202ENSMUST00000171155 3403 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
Pcdh1F7BJK1 Disc1-204ENSMUST00000115885 2408 ntAPPRIS ALT2 TSL 5 BASIC16.86■□□□□ 0.29
Pcdh1F7BJK1 Disc1-202ENSMUST00000075730 2408 ntAPPRIS P3 TSL 5 BASIC16.86■□□□□ 0.29
Pcdh1F7BJK1 D11Wsu47e-202ENSMUST00000106621 2062 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
Pcdh1F7BJK1 Cblc-201ENSMUST00000043822 1662 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
Pcdh1F7BJK1 1700023F06Rik-202ENSMUST00000107026 1127 ntAPPRIS ALT2 TSL 1 (best) BASIC16.86■□□□□ 0.29
Pcdh1F7BJK1 Cyc1-201ENSMUST00000023210 1194 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
Pcdh1F7BJK1 Lsp1-202ENSMUST00000038946 1828 ntAPPRIS P3 TSL 1 (best) BASIC16.86■□□□□ 0.29
Pcdh1F7BJK1 Pomgnt2-201ENSMUST00000084743 2365 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
Pcdh1F7BJK1 Kat14-201ENSMUST00000028911 3801 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
Pcdh1F7BJK1 Cetn4-205ENSMUST00000140956 2981 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
Pcdh1F7BJK1 Foxa3-201ENSMUST00000036018 2037 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
Pcdh1F7BJK1 Map1lc3b-204ENSMUST00000181826 2633 ntBASIC16.85■□□□□ 0.29
Pcdh1F7BJK1 Creg1-202ENSMUST00000111432 2163 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
Pcdh1F7BJK1 Zfp697-201ENSMUST00000056096 5166 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
Pcdh1F7BJK1 Sptbn4-201ENSMUST00000011895 8747 ntAPPRIS P2 TSL 1 (best) BASIC16.85■□□□□ 0.29
Pcdh1F7BJK1 Sema6d-203ENSMUST00000077847 6444 ntTSL 5 BASIC16.85■□□□□ 0.29
Pcdh1F7BJK1 Ube2d-ps-204ENSMUST00000137510 1846 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
Pcdh1F7BJK1 Bex1-202ENSMUST00000113118 754 ntAPPRIS P1 TSL 2 BASIC16.85■□□□□ 0.29
Pcdh1F7BJK1 Pde6d-203ENSMUST00000146220 879 ntTSL 2 BASIC16.85■□□□□ 0.29
Pcdh1F7BJK1 Pawr-202ENSMUST00000218332 870 ntAPPRIS ALT2 TSL 1 (best) BASIC16.85■□□□□ 0.29
Pcdh1F7BJK1 Svbp-201ENSMUST00000030395 733 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
Pcdh1F7BJK1 Gm9847-201ENSMUST00000052528 599 ntBASIC16.85■□□□□ 0.29
Retrieved 100 of 76,532 protein–RNA pairs in 35.4 ms