Protein–RNA interactions for Protein: A0A140LI48

Pcdhgb8, Protocadherin gamma subfamily B, 8, mousemouse

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pcdhgb8A0A140LI48 Pole4-204ENSMUST00000160281 648 ntAPPRIS ALT1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Pcdhgb8A0A140LI48 Apoe-205ENSMUST00000173739 1221 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Pcdhgb8A0A140LI48 Apoe-209ENSMUST00000174355 1104 ntAPPRIS P1 TSL 5 BASIC16.94■□□□□ 0.3
Pcdhgb8A0A140LI48 Gm29394-204ENSMUST00000177504 448 ntAPPRIS ALT2 TSL 3 BASIC16.94■□□□□ 0.3
Pcdhgb8A0A140LI48 Gm8495-201ENSMUST00000188740 694 ntBASIC16.94■□□□□ 0.3
Pcdhgb8A0A140LI48 Rasl10b-201ENSMUST00000021022 996 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Pcdhgb8A0A140LI48 Gpx7-201ENSMUST00000030332 1289 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Pcdhgb8A0A140LI48 Apoe-201ENSMUST00000003066 1128 ntAPPRIS P1 TSL 5 BASIC16.94■□□□□ 0.3
Pcdhgb8A0A140LI48 Sigmar1-201ENSMUST00000059354 1640 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Pcdhgb8A0A140LI48 Gm45141-201ENSMUST00000206502 1888 ntBASIC16.94■□□□□ 0.3
Pcdhgb8A0A140LI48 Tmem11-203ENSMUST00000168218 1511 ntTSL 2 BASIC16.94■□□□□ 0.3
Pcdhgb8A0A140LI48 Acot3-203ENSMUST00000223080 1545 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
Pcdhgb8A0A140LI48 Dtwd2-201ENSMUST00000025383 2476 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Pcdhgb8A0A140LI48 Ltb4r2-201ENSMUST00000044554 1439 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Pcdhgb8A0A140LI48 Daxx-202ENSMUST00000170075 2673 ntAPPRIS P2 TSL 1 (best) BASIC16.93■□□□□ 0.3
Pcdhgb8A0A140LI48 Dlgap2-209ENSMUST00000152652 3842 ntAPPRIS P4 TSL 1 (best) BASIC16.93■□□□□ 0.3
Pcdhgb8A0A140LI48 Mfhas1-201ENSMUST00000037666 6408 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Pcdhgb8A0A140LI48 Tomm40-201ENSMUST00000032555 1646 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Pcdhgb8A0A140LI48 Numbl-201ENSMUST00000079258 2760 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Pcdhgb8A0A140LI48 D5Ertd579e-204ENSMUST00000140653 2014 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
Pcdhgb8A0A140LI48 Srsf1-202ENSMUST00000107920 1209 ntTSL 5 BASIC16.93■□□□□ 0.3
Pcdhgb8A0A140LI48 Paip2-205ENSMUST00000115737 713 ntAPPRIS P1 TSL 3 BASIC16.93■□□□□ 0.3
Pcdhgb8A0A140LI48 Gm18284-201ENSMUST00000172604 624 ntBASIC16.93■□□□□ 0.3
Pcdhgb8A0A140LI48 Mir6236-201ENSMUST00000184437 123 ntBASIC16.93■□□□□ 0.3
Pcdhgb8A0A140LI48 Rtn4rl2-201ENSMUST00000054514 1263 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Pcdhgb8A0A140LI48 Dixdc1-207ENSMUST00000121634 2420 ntTSL 5 BASIC16.93■□□□□ 0.3
Pcdhgb8A0A140LI48 Cdca4-201ENSMUST00000062092 2425 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Pcdhgb8A0A140LI48 Rnf112-201ENSMUST00000054927 3086 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
Pcdhgb8A0A140LI48 Grk6-201ENSMUST00000001115 2994 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
Pcdhgb8A0A140LI48 Cebpg-202ENSMUST00000130491 4709 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Pcdhgb8A0A140LI48 Mtmr1-201ENSMUST00000015358 4634 ntAPPRIS P2 TSL 1 (best) BASIC16.93■□□□□ 0.3
Pcdhgb8A0A140LI48 Nfix-204ENSMUST00000109764 5476 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
Pcdhgb8A0A140LI48 Mid1-203ENSMUST00000079443 2815 ntTSL 5 BASIC16.92■□□□□ 0.3
Pcdhgb8A0A140LI48 Adgrv1-207ENSMUST00000128585 2580 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
Pcdhgb8A0A140LI48 Ntn5-202ENSMUST00000182750 1758 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Pcdhgb8A0A140LI48 Mark2-203ENSMUST00000051711 2867 ntAPPRIS P4 TSL 1 (best) BASIC16.92■□□□□ 0.3
Pcdhgb8A0A140LI48 Hspa5-202ENSMUST00000100171 2613 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Pcdhgb8A0A140LI48 Syt3-203ENSMUST00000120262 2096 ntAPPRIS P1 TSL 5 BASIC16.92■□□□□ 0.3
Pcdhgb8A0A140LI48 Tusc3-203ENSMUST00000209440 1535 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Pcdhgb8A0A140LI48 Rps2-208ENSMUST00000170715 998 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Pcdhgb8A0A140LI48 Flvcr1-202ENSMUST00000191946 1216 ntBASIC16.92■□□□□ 0.3
Pcdhgb8A0A140LI48 Ninj1-201ENSMUST00000049022 1187 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Pcdhgb8A0A140LI48 Trpc4ap-201ENSMUST00000041059 3204 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
Pcdhgb8A0A140LI48 Arhgap21-201ENSMUST00000114594 7351 ntAPPRIS ALT2 TSL 5 BASIC16.92■□□□□ 0.3
Pcdhgb8A0A140LI48 Dbnl-201ENSMUST00000020769 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
Pcdhgb8A0A140LI48 Mob2-205ENSMUST00000211000 1646 ntTSL 5 BASIC16.92■□□□□ 0.3
Pcdhgb8A0A140LI48 Naglu-201ENSMUST00000001802 2560 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Pcdhgb8A0A140LI48 Rcc1-202ENSMUST00000084250 2285 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Pcdhgb8A0A140LI48 Eif2ak4-207ENSMUST00000110877 2134 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
Pcdhgb8A0A140LI48 Evi5l-209ENSMUST00000177053 1542 ntAPPRIS P3 TSL 1 (best) BASIC16.91■□□□□ 0.3
Pcdhgb8A0A140LI48 Nmnat3-202ENSMUST00000112937 1898 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
Pcdhgb8A0A140LI48 Dnajb2-206ENSMUST00000187058 1732 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
Pcdhgb8A0A140LI48 Tmem8-201ENSMUST00000025010 3464 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Pcdhgb8A0A140LI48 St7l-201ENSMUST00000059271 5728 ntAPPRIS P3 TSL 1 (best) BASIC16.91■□□□□ 0.3
Pcdhgb8A0A140LI48 Gm20163-202ENSMUST00000212288 989 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
Pcdhgb8A0A140LI48 4930519A11Rik-202ENSMUST00000221053 667 ntTSL 3 BASIC16.91■□□□□ 0.3
Pcdhgb8A0A140LI48 1700012B09Rik-201ENSMUST00000060330 688 ntAPPRIS P2 TSL 1 (best) BASIC16.91■□□□□ 0.3
Pcdhgb8A0A140LI48 Hyi-201ENSMUST00000006562 910 ntAPPRIS P1 TSL 5 BASIC16.91■□□□□ 0.3
Pcdhgb8A0A140LI48 Dtd2-202ENSMUST00000085404 1012 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
Pcdhgb8A0A140LI48 Ythdc1-202ENSMUST00000119339 3222 ntAPPRIS ALT2 TSL 5 BASIC16.91■□□□□ 0.3
Pcdhgb8A0A140LI48 Parl-201ENSMUST00000048642 1348 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Pcdhgb8A0A140LI48 Runx2-204ENSMUST00000159943 2316 ntAPPRIS P3 TSL 1 (best) BASIC16.91■□□□□ 0.3
Pcdhgb8A0A140LI48 1600012H06Rik-201ENSMUST00000052691 2506 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Pcdhgb8A0A140LI48 Celf6-202ENSMUST00000118164 1583 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
Pcdhgb8A0A140LI48 Exog-202ENSMUST00000164213 2627 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
Pcdhgb8A0A140LI48 Pycr2-201ENSMUST00000027802 1580 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Pcdhgb8A0A140LI48 Prss12-201ENSMUST00000029603 2602 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Pcdhgb8A0A140LI48 Rcc1-201ENSMUST00000030726 2278 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
Pcdhgb8A0A140LI48 Marcks-201ENSMUST00000092584 4048 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Pcdhgb8A0A140LI48 Man1c1-201ENSMUST00000038628 4285 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Pcdhgb8A0A140LI48 Fgfrl1-202ENSMUST00000112560 2318 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
Pcdhgb8A0A140LI48 Matr3-209ENSMUST00000188275 1951 ntTSL 5 BASIC16.9■□□□□ 0.3
Pcdhgb8A0A140LI48 B3gnt2-202ENSMUST00000062844 3057 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Pcdhgb8A0A140LI48 Gm26881-201ENSMUST00000180426 593 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
Pcdhgb8A0A140LI48 Gm26833-201ENSMUST00000180899 440 ntBASIC16.9■□□□□ 0.3
Pcdhgb8A0A140LI48 Meis3-205ENSMUST00000176506 1839 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
Pcdhgb8A0A140LI48 Zmym3-207ENSMUST00000120201 1859 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
Pcdhgb8A0A140LI48 Chd3os-201ENSMUST00000129321 2081 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Pcdhgb8A0A140LI48 Arhgap27-202ENSMUST00000092557 1504 ntTSL 2 BASIC16.9■□□□□ 0.3
Pcdhgb8A0A140LI48 Pxdc1-202ENSMUST00000053459 2684 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Pcdhgb8A0A140LI48 Gmds-201ENSMUST00000041859 1713 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Pcdhgb8A0A140LI48 Khk-204ENSMUST00000201621 1583 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.3
Pcdhgb8A0A140LI48 Rell2-212ENSMUST00000177058 1762 ntAPPRIS P1 TSL 5 BASIC16.89■□□□□ 0.3
Pcdhgb8A0A140LI48 Rhbdd3-201ENSMUST00000036320 1790 ntTSL 1 (best) BASIC16.89■□□□□ 0.3
Pcdhgb8A0A140LI48 Cdc20-201ENSMUST00000006565 1793 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.3
Pcdhgb8A0A140LI48 Eif2b4-201ENSMUST00000077693 2025 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Pcdhgb8A0A140LI48 Akt1s1-204ENSMUST00000107885 1812 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
Pcdhgb8A0A140LI48 Tarbp1-201ENSMUST00000170518 6383 ntAPPRIS P1 TSL 5 BASIC16.89■□□□□ 0.29
Pcdhgb8A0A140LI48 Dlgap2-203ENSMUST00000133298 4503 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
Pcdhgb8A0A140LI48 Stk3-202ENSMUST00000067033 2471 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
Pcdhgb8A0A140LI48 Slc35b2-201ENSMUST00000041353 2326 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
Pcdhgb8A0A140LI48 Il17rc-201ENSMUST00000058300 2302 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Pcdhgb8A0A140LI48 1700016H13Rik-203ENSMUST00000120108 797 ntAPPRIS P1 TSL 2 BASIC16.89■□□□□ 0.29
Pcdhgb8A0A140LI48 Cdc34b-202ENSMUST00000188741 1252 ntBASIC16.89■□□□□ 0.29
Pcdhgb8A0A140LI48 Cdc34-201ENSMUST00000020550 1266 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Pcdhgb8A0A140LI48 Cdc34b-201ENSMUST00000021240 1233 ntAPPRIS P1 BASIC16.89■□□□□ 0.29
Pcdhgb8A0A140LI48 Esrrb-201ENSMUST00000021680 2136 ntAPPRIS P1 TSL 5 BASIC16.89■□□□□ 0.29
Pcdhgb8A0A140LI48 Wdr41-208ENSMUST00000222995 1112 ntTSL 5 BASIC16.89■□□□□ 0.29
Pcdhgb8A0A140LI48 Gtsf1-201ENSMUST00000023129 819 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Pcdhgb8A0A140LI48 Dnajb11-201ENSMUST00000004574 1927 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Retrieved 100 of 76,532 protein–RNA pairs in 15.8 ms