Protein–RNA interactions for Protein: A0A0J9YTW6

Scn2a, Sodium channel protein, mousemouse

Predictions only

Length 2,006 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn2aA0A0J9YTW6 Arhgef1-204ENSMUST00000117796 3508 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
Scn2aA0A0J9YTW6 Six3os1-206ENSMUST00000175921 2737 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
Scn2aA0A0J9YTW6 Gm15751-201ENSMUST00000134552 1862 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
Scn2aA0A0J9YTW6 Znrf3-201ENSMUST00000109867 6311 ntAPPRIS P3 TSL 5 BASIC17.32■□□□□ 0.36
Scn2aA0A0J9YTW6 Zfp668-202ENSMUST00000106261 2410 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Scn2aA0A0J9YTW6 Cystm1-201ENSMUST00000050584 831 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
Scn2aA0A0J9YTW6 Hoxc12-201ENSMUST00000055562 1031 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Scn2aA0A0J9YTW6 Cd37-204ENSMUST00000209779 2541 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
Scn2aA0A0J9YTW6 Fbxl5-204ENSMUST00000119523 2801 ntTSL 5 BASIC17.31■□□□□ 0.36
Scn2aA0A0J9YTW6 Prkg2-201ENSMUST00000031277 2618 ntTSL 5 BASIC17.31■□□□□ 0.36
Scn2aA0A0J9YTW6 Dxo-211ENSMUST00000180043 1447 ntAPPRIS P1 TSL 5 BASIC17.31■□□□□ 0.36
Scn2aA0A0J9YTW6 Golga7b-202ENSMUST00000122375 2836 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Scn2aA0A0J9YTW6 Bhlhe22-201ENSMUST00000026120 3344 ntAPPRIS P1 BASIC17.31■□□□□ 0.36
Scn2aA0A0J9YTW6 Stmn4-203ENSMUST00000120229 1281 ntTSL 2 BASIC17.31■□□□□ 0.36
Scn2aA0A0J9YTW6 Adap2-201ENSMUST00000021050 1785 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Scn2aA0A0J9YTW6 1700003E16Rik-201ENSMUST00000032106 2020 ntAPPRIS P1 TSL 5 BASIC17.31■□□□□ 0.36
Scn2aA0A0J9YTW6 Gnpda1-201ENSMUST00000063814 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Scn2aA0A0J9YTW6 Zcchc24-201ENSMUST00000069180 4556 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Scn2aA0A0J9YTW6 Gm18688-201ENSMUST00000204695 1859 ntBASIC17.31■□□□□ 0.36
Scn2aA0A0J9YTW6 Tal1-204ENSMUST00000162489 2894 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Scn2aA0A0J9YTW6 Smtnl2-201ENSMUST00000050226 2624 ntAPPRIS P2 TSL 1 (best) BASIC17.3■□□□□ 0.36
Scn2aA0A0J9YTW6 Rpl26-202ENSMUST00000101014 657 ntAPPRIS ALT1 TSL 5 BASIC17.3■□□□□ 0.36
Scn2aA0A0J9YTW6 Nudt14-202ENSMUST00000221397 1241 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Scn2aA0A0J9YTW6 Arl10-201ENSMUST00000026988 1046 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Scn2aA0A0J9YTW6 Magi2-206ENSMUST00000197443 6578 ntAPPRIS ALT2 TSL 5 BASIC17.3■□□□□ 0.36
Scn2aA0A0J9YTW6 Mrpl3-205ENSMUST00000149243 2309 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
Scn2aA0A0J9YTW6 Scarb1-201ENSMUST00000086075 2521 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Scn2aA0A0J9YTW6 Zfp385b-204ENSMUST00000111831 2734 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
Scn2aA0A0J9YTW6 Csnk1a1-210ENSMUST00000170862 2259 ntAPPRIS ALT1 TSL 5 BASIC17.3■□□□□ 0.36
Scn2aA0A0J9YTW6 Rab7-202ENSMUST00000113596 1657 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Scn2aA0A0J9YTW6 Gm38342-201ENSMUST00000195710 2980 ntBASIC17.3■□□□□ 0.36
Scn2aA0A0J9YTW6 Zcchc13-201ENSMUST00000033692 1085 ntAPPRIS P1 BASIC17.3■□□□□ 0.36
Scn2aA0A0J9YTW6 Gm6365-201ENSMUST00000054711 744 ntBASIC17.3■□□□□ 0.36
Scn2aA0A0J9YTW6 Fam118a-201ENSMUST00000023069 2543 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Scn2aA0A0J9YTW6 Pianp-201ENSMUST00000032479 2250 ntAPPRIS P2 TSL 1 (best) BASIC17.29■□□□□ 0.36
Scn2aA0A0J9YTW6 Tmem64-201ENSMUST00000062684 4670 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Scn2aA0A0J9YTW6 Cd83-201ENSMUST00000015540 2477 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Scn2aA0A0J9YTW6 Foxi3-202ENSMUST00000163089 1278 ntAPPRIS ALT2 TSL 5 BASIC17.29■□□□□ 0.36
Scn2aA0A0J9YTW6 Tecr-203ENSMUST00000165740 1120 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Scn2aA0A0J9YTW6 Gm29442-201ENSMUST00000188725 724 ntTSL 3 BASIC17.29■□□□□ 0.36
Scn2aA0A0J9YTW6 Foxi3-201ENSMUST00000069634 1206 ntAPPRIS P2 TSL 5 BASIC17.29■□□□□ 0.36
Scn2aA0A0J9YTW6 Ttc32-201ENSMUST00000085741 1000 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Scn2aA0A0J9YTW6 Golph3-205ENSMUST00000228671 2842 ntBASIC17.29■□□□□ 0.36
Scn2aA0A0J9YTW6 Nfatc2-201ENSMUST00000029057 2310 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Scn2aA0A0J9YTW6 Pnck-202ENSMUST00000114472 1532 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Scn2aA0A0J9YTW6 Klhdc10-202ENSMUST00000068259 5901 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Scn2aA0A0J9YTW6 Ehmt2-203ENSMUST00000097342 3934 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
Scn2aA0A0J9YTW6 Ralgapa1-204ENSMUST00000219432 6631 ntTSL 5 BASIC17.29■□□□□ 0.36
Scn2aA0A0J9YTW6 Slc35d2-201ENSMUST00000099441 2303 ntAPPRIS P2 TSL 1 (best) BASIC17.28■□□□□ 0.36
Scn2aA0A0J9YTW6 Acot7-201ENSMUST00000030779 1425 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
Scn2aA0A0J9YTW6 Gm7290-201ENSMUST00000104990 617 ntBASIC17.28■□□□□ 0.36
Scn2aA0A0J9YTW6 Mrpl52-201ENSMUST00000010550 418 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Scn2aA0A0J9YTW6 Gm12918-201ENSMUST00000120234 636 ntBASIC17.28■□□□□ 0.36
Scn2aA0A0J9YTW6 Gm15710-201ENSMUST00000121821 636 ntBASIC17.28■□□□□ 0.36
Scn2aA0A0J9YTW6 Smim1-209ENSMUST00000145527 562 ntAPPRIS P1 TSL 2 BASIC17.28■□□□□ 0.36
Scn2aA0A0J9YTW6 Gm5075-201ENSMUST00000196916 622 ntBASIC17.28■□□□□ 0.36
Scn2aA0A0J9YTW6 6230400D17Rik-202ENSMUST00000224976 1019 ntBASIC17.28■□□□□ 0.36
Scn2aA0A0J9YTW6 Rpl13-ps6-201ENSMUST00000079761 636 ntBASIC17.28■□□□□ 0.36
Scn2aA0A0J9YTW6 Rpl13-ps3-201ENSMUST00000079960 624 ntBASIC17.28■□□□□ 0.36
Scn2aA0A0J9YTW6 Lgmn-202ENSMUST00000110020 1835 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Scn2aA0A0J9YTW6 Mapre3-202ENSMUST00000200692 1816 ntTSL 5 BASIC17.28■□□□□ 0.36
Scn2aA0A0J9YTW6 Sco1-202ENSMUST00000108690 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
Scn2aA0A0J9YTW6 Brsk2-201ENSMUST00000018971 4049 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
Scn2aA0A0J9YTW6 Rhbdf1-201ENSMUST00000020524 2946 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Scn2aA0A0J9YTW6 Clk3-201ENSMUST00000065330 2496 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Scn2aA0A0J9YTW6 Gm26971-201ENSMUST00000182423 1072 ntBASIC17.28■□□□□ 0.36
Scn2aA0A0J9YTW6 Rbks-201ENSMUST00000031018 1042 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Scn2aA0A0J9YTW6 Nbl1-201ENSMUST00000042844 1793 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Scn2aA0A0J9YTW6 5730507C01Rik-202ENSMUST00000177778 2542 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
Scn2aA0A0J9YTW6 Gpn2-201ENSMUST00000030661 1367 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Scn2aA0A0J9YTW6 Crhr1-201ENSMUST00000093925 2460 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Scn2aA0A0J9YTW6 Magi3-202ENSMUST00000121198 5912 ntAPPRIS ALT2 TSL 5 BASIC17.28■□□□□ 0.36
Scn2aA0A0J9YTW6 Cpne2-201ENSMUST00000048653 2342 ntAPPRIS P2 TSL 1 (best) BASIC17.27■□□□□ 0.36
Scn2aA0A0J9YTW6 Gm5540-201ENSMUST00000131852 1848 ntBASIC17.27■□□□□ 0.36
Scn2aA0A0J9YTW6 Fbxo44-201ENSMUST00000057907 1829 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Scn2aA0A0J9YTW6 Adgrv1-211ENSMUST00000146749 1592 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
Scn2aA0A0J9YTW6 Exoc5-206ENSMUST00000161504 2582 ntTSL 5 BASIC17.27■□□□□ 0.36
Scn2aA0A0J9YTW6 Cox16-207ENSMUST00000169124 685 ntTSL 2 BASIC17.27■□□□□ 0.36
Scn2aA0A0J9YTW6 Gm26524-201ENSMUST00000192339 390 ntBASIC17.27■□□□□ 0.36
Scn2aA0A0J9YTW6 Gm46218-201ENSMUST00000215448 801 ntTSL 5 BASIC17.27■□□□□ 0.36
Scn2aA0A0J9YTW6 Rnf208-201ENSMUST00000060818 1137 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Scn2aA0A0J9YTW6 Blcap-202ENSMUST00000109528 2056 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Scn2aA0A0J9YTW6 Gmpr-201ENSMUST00000000260 1580 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
Scn2aA0A0J9YTW6 AW047730-202ENSMUST00000181406 2579 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
Scn2aA0A0J9YTW6 Kirrel-201ENSMUST00000041732 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.35
Scn2aA0A0J9YTW6 Stk11-201ENSMUST00000003152 2566 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.35
Scn2aA0A0J9YTW6 Gm15155-201ENSMUST00000112542 1009 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Scn2aA0A0J9YTW6 Gm11713-201ENSMUST00000139941 523 ntTSL 3 BASIC17.26■□□□□ 0.35
Scn2aA0A0J9YTW6 H2afx-201ENSMUST00000052686 1384 ntAPPRIS P1 BASIC17.26■□□□□ 0.35
Scn2aA0A0J9YTW6 Ppp3ca-201ENSMUST00000056758 2194 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Scn2aA0A0J9YTW6 Dapk1-202ENSMUST00000077453 5491 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Scn2aA0A0J9YTW6 Kcng3-201ENSMUST00000051482 3356 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Scn2aA0A0J9YTW6 AB124611-202ENSMUST00000086361 1310 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
Scn2aA0A0J9YTW6 Psmd3-201ENSMUST00000017365 2148 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Scn2aA0A0J9YTW6 Setd3-201ENSMUST00000071095 2755 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Scn2aA0A0J9YTW6 Klc1-204ENSMUST00000122300 2268 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
Scn2aA0A0J9YTW6 Coro1a-209ENSMUST00000173108 1170 ntTSL 5 BASIC17.26■□□□□ 0.35
Scn2aA0A0J9YTW6 Gm42555-201ENSMUST00000199304 1039 ntBASIC17.26■□□□□ 0.35
Scn2aA0A0J9YTW6 1700008J07Rik-201ENSMUST00000185351 2432 ntBASIC17.26■□□□□ 0.35
Scn2aA0A0J9YTW6 Dstn-201ENSMUST00000103172 1911 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Retrieved 100 of 76,532 protein–RNA pairs in 19.8 ms